From 4e9dda3ca8060bee5bcdd0a7387f634c2ae6a469 Mon Sep 17 00:00:00 2001
From: B13nch3n <b13nch3n_01@theb-si.de>
Date: Sat, 7 May 2022 21:13:23 +0200
Subject: [PATCH] Explain remaining options

---
 validation/README.md | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/validation/README.md b/validation/README.md
index 224ec96..d97ee30 100644
--- a/validation/README.md
+++ b/validation/README.md
@@ -67,7 +67,7 @@ $ validate-mmcif-file -a extra model.cif
 $ 
 ```
 
-If the URL points to a subdirectory, that must be reflected by the associates directory declared to the validation tool. The following example illustrates that the `extra` directory needs a `pae` directory storing the associated file as expected by `_ma_entry_associated_files.file_url`:
+If the URL points to a subdirectory, this must be reflected by the associates directory tree declared to the validation tool. The following example illustrates that the `extra` directory needs a `pae` directory storing the associated file as expected by `_ma_entry_associated_files.file_url`:
 
 ```bash
 $ grep _ma_entry_associated_files.file_url model.cif
@@ -81,10 +81,13 @@ $ validate-mmcif-file -a extra model.cif
 $ 
 ```
 
+### Misc. arguments
 
+|**`--help`** (**`-h`**)|Print a help/ usage page for the validation tool.|
+|**`--dict-sdb <SDB FILE>`** (**`-d`**)|Format dictionary in (binary) SDB format used for validating a ModelCIF file. The container comes with a SDB for ModelCIF and one for the original PDBx/mmCIF format.|
+|**`--out-file <JSON FILE>`** (**`-o`**)|Instead of printing the output to `stdout`, store it in a JSON file.|
+|**`--verbose`** (**`-v`**)|Write information from intermediate steps to `stdout`. This includes the raw output of `CifCheck`.|
 
-- basic usage
-- remaining options
 
 ## How to run the container
 
@@ -95,6 +98,6 @@ $
 # Files in this directory
 
 <!--  LocalWords:  PDBx ModelCIF TOC JSON CifCheck RCSB mmcif cif pdbx dic dir
-<!--  LocalWords:  url pae
+<!--  LocalWords:  url pae sdb SDB stdout
  -->
  -->
-- 
GitLab