diff --git a/projects/2024-07-ma-osf-ppp2r2a/translate2modelcif.py b/projects/2024-07-ma-osf-ppp2r2a/translate2modelcif.py index 725d7976725b1804c136490daaef5ce1ca5d1cc0..c1a96c8389ccd92b8d5bdaabdecdbe076bfbd314 100644 --- a/projects/2024-07-ma-osf-ppp2r2a/translate2modelcif.py +++ b/projects/2024-07-ma-osf-ppp2r2a/translate2modelcif.py @@ -1219,7 +1219,7 @@ def _get_modelcif_entities(target_ents, asym_units, system): sequence_crc64=cif_ent["up_crc64"], sequence=cif_ent["up_sequence"], ) - # ASSUME: full model covered w/o mismatches + # ASSUME: full model covered # -> NOTE: sequence passed above is cut based on alignments! up_ref.alignments.append(modelcif.reference.Alignment( db_begin=cif_ent["up_range"][0], diff --git a/projects/2024-08-ma-dm-hisrep/translate2modelcif.py b/projects/2024-08-ma-dm-hisrep/translate2modelcif.py index aa4efee9af890418938b72e64682e1b44361f0cf..611919a1f3445cd99b835111fd3e71c5aaef6faa 100644 --- a/projects/2024-08-ma-dm-hisrep/translate2modelcif.py +++ b/projects/2024-08-ma-dm-hisrep/translate2modelcif.py @@ -1287,7 +1287,7 @@ def _get_modelcif_entities(target_ents, asym_units, system): sequence_crc64=cif_ent["up_crc64"], sequence=cif_ent["up_sequence"], ) - # ASSUME: full model covered w/o mismatches + # add alignment incl. mismatches # -> NOTE: sequence passed above is cut based on alignments! up_ref.alignments.append(modelcif.reference.Alignment( db_begin=cif_ent["up_range"][0], diff --git a/projects/2025-01-ma-idk-u2osmap/translate2modelcif.py b/projects/2025-01-ma-idk-u2osmap/translate2modelcif.py index bd4e48befe290550f6686f43627c5565f55f9f08..065e6de19444e54a5d668ad879dd515196f485c2 100644 --- a/projects/2025-01-ma-idk-u2osmap/translate2modelcif.py +++ b/projects/2025-01-ma-idk-u2osmap/translate2modelcif.py @@ -1212,7 +1212,7 @@ def _get_modelcif_entities(target_ents, asym_units, system): sequence_crc64=cif_ent["up_crc64"], sequence=cif_ent["up_sequence"], ) - # ASSUME: full model covered w/o mismatches + # add alignment incl. mismatches # -> NOTE: sequence passed above is cut based on alignments! up_ref.alignments.append(modelcif.reference.Alignment( db_begin=cif_ent["up_range"][0],