From 5aa405539cd6d5008eace50117ca935c7d9f6cb6 Mon Sep 17 00:00:00 2001
From: Gerardo Tauriello <gerardo.tauriello@unibas.ch>
Date: Tue, 25 Mar 2025 23:56:15 +0100
Subject: [PATCH] Fixed mention of mismatches.
---
projects/2024-07-ma-osf-ppp2r2a/translate2modelcif.py | 2 +-
projects/2024-08-ma-dm-hisrep/translate2modelcif.py | 2 +-
projects/2025-01-ma-idk-u2osmap/translate2modelcif.py | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/projects/2024-07-ma-osf-ppp2r2a/translate2modelcif.py b/projects/2024-07-ma-osf-ppp2r2a/translate2modelcif.py
index 725d797..c1a96c8 100644
--- a/projects/2024-07-ma-osf-ppp2r2a/translate2modelcif.py
+++ b/projects/2024-07-ma-osf-ppp2r2a/translate2modelcif.py
@@ -1219,7 +1219,7 @@ def _get_modelcif_entities(target_ents, asym_units, system):
sequence_crc64=cif_ent["up_crc64"],
sequence=cif_ent["up_sequence"],
)
- # ASSUME: full model covered w/o mismatches
+ # ASSUME: full model covered
# -> NOTE: sequence passed above is cut based on alignments!
up_ref.alignments.append(modelcif.reference.Alignment(
db_begin=cif_ent["up_range"][0],
diff --git a/projects/2024-08-ma-dm-hisrep/translate2modelcif.py b/projects/2024-08-ma-dm-hisrep/translate2modelcif.py
index aa4efee..611919a 100644
--- a/projects/2024-08-ma-dm-hisrep/translate2modelcif.py
+++ b/projects/2024-08-ma-dm-hisrep/translate2modelcif.py
@@ -1287,7 +1287,7 @@ def _get_modelcif_entities(target_ents, asym_units, system):
sequence_crc64=cif_ent["up_crc64"],
sequence=cif_ent["up_sequence"],
)
- # ASSUME: full model covered w/o mismatches
+ # add alignment incl. mismatches
# -> NOTE: sequence passed above is cut based on alignments!
up_ref.alignments.append(modelcif.reference.Alignment(
db_begin=cif_ent["up_range"][0],
diff --git a/projects/2025-01-ma-idk-u2osmap/translate2modelcif.py b/projects/2025-01-ma-idk-u2osmap/translate2modelcif.py
index bd4e48b..065e6de 100644
--- a/projects/2025-01-ma-idk-u2osmap/translate2modelcif.py
+++ b/projects/2025-01-ma-idk-u2osmap/translate2modelcif.py
@@ -1212,7 +1212,7 @@ def _get_modelcif_entities(target_ents, asym_units, system):
sequence_crc64=cif_ent["up_crc64"],
sequence=cif_ent["up_sequence"],
)
- # ASSUME: full model covered w/o mismatches
+ # add alignment incl. mismatches
# -> NOTE: sequence passed above is cut based on alignments!
up_ref.alignments.append(modelcif.reference.Alignment(
db_begin=cif_ent["up_range"][0],
--
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