diff --git a/projects/CoFFE-sponge-proteins/README.md b/projects/CoFFE-sponge-proteins/README.md
index 910fa379beb05bb010fa316292d07f41923f2c8f..1a9a99cbe6f68ba77a25a7cbef98291a877ad57d 100644
--- a/projects/CoFFE-sponge-proteins/README.md
+++ b/projects/CoFFE-sponge-proteins/README.md
@@ -1,8 +1,6 @@
# Modelling of Spongilla lacustris proteome with functional annotations
-Main links:
-- [Link Project in MA](https://modelarchive.org/doi/10.5452/ma-coffe-slac) (incl. background on project itself)
-- [Jira-story](https://jira.biozentrum.unibas.ch/browse/SCHWED-5596)
+[Link to project in ModelArchive](https://modelarchive.org/doi/10.5452/ma-coffe-slac) (incl. background on project itself)
Setup:
- Using ColabFold for monomer predictions with AlphaFold without links to sequence databases
@@ -16,11 +14,6 @@ Special features here:
- Description is long multiline text which includes output from functional annotation
- Expected to be the first set of models converted by us to ModelCIF and fully imported into ModelArchive
- Includes generic code for handling of ColabFold setup based on config.json
-- Includes test code for conversion of ModelCIF to content displayed in ModelArchive
Content:
- translate2modelcif.py : script to do conversion; compatible with Docker setup from [ma-wilkins-import](https://git.scicore.unibas.ch/schwede/ma-wilkins-import/-/tree/6bbd6fa7ec53e1a0971fba40c96fa971d1022f74) (and script based on code there)
-- tests folder with
- - custom Docker setup used locally (Mac; with extra libraries for testing) and on work machine (managed CentOS with old docker version)
- - test_modelCIF_MA.py to convert ModelCIF to content displayed in ModelArchive (needs gemmi library)
- - test.ipynb and .html for tests performed during development
diff --git a/projects/CoFFE-sponge-proteins/tests/Docker/Dockerfile_GT b/projects/CoFFE-sponge-proteins/tests/Docker/Dockerfile_GT
deleted file mode 100644
index e87a2e5dcec22cc52069d0a1320bd9b2a2172913..0000000000000000000000000000000000000000
--- a/projects/CoFFE-sponge-proteins/tests/Docker/Dockerfile_GT
+++ /dev/null
@@ -1,49 +0,0 @@
-ARG VERSION_OST="2.3.0"
-FROM registry.scicore.unibas.ch/schwede/openstructure:${VERSION_OST}
-# We need to declare ARGs again which were declared before the build stage
-# (FROM directive), otherwise they won't be available in this stage.
-ARG VERSION_OST
-
-## Set up environment
-ENV SRC_DIR="/tmp" \
- VERSION_OST=${VERSION_OST} \
- PYTHONUNBUFFERED=1 \
- PYTHONDONTWRITEBYTECODE=1
-
-## Install python-modelcif and python-ihm
-COPY requirements.txt ${SRC_DIR}
-COPY pdbx.tar.gz ${SRC_DIR}
-WORKDIR ${SRC_DIR}
-RUN set -e pipefail; \
- apt-get update -y; \
- # for development, install venv
- apt-get install -y git pip python3.8-venv; \
- pip install -r requirements.txt; \
- # for development, install extra stuff
- pip install black pylint ipython jupyter markdown gemmi; \
- tar zxf pdbx.tar.gz -C /usr/local/lib64/python3.8/site-packages; \
- # python-ihm and -modelcif
- git clone https://github.com/ihmwg/python-ihm.git ihm.git; \
- cd ihm.git; \
- python3 setup.py build; \
- python3 setup.py install; \
- rm -rf ${SRC_DIR}/ihm.git; \
- cd ${SRC_DIR}; \
- git clone https://github.com/ihmwg/python-modelcif.git modelcif.git; \
- cd modelcif.git; \
- python3 setup.py build; \
- python3 setup.py install; \
- rm -rf ${SRC_DIR}/modelcif.git; \
- apt-get remove -y git pip; \
- rm ${SRC_DIR}/requirements.txt ${SRC_DIR}/pdbx.tar.gz
-
-# had issues with older docker version on managed centos box...
-
-# NOTEBOOK ENV
-ENV DNG_ROOT=$OST_ROOT
-ENV DNG_INITDIR=${DNG_ROOT}/lib64/python3.8/site-packages/ost
-
-# standard entry point ipython
-RUN echo 'alias ost_ipython="ipython -i $DNG_INITDIR/ost_startup.py"' >> ~/.bashrc
-
-ENTRYPOINT bash
diff --git a/projects/CoFFE-sponge-proteins/tests/Docker/Dockerfile_work b/projects/CoFFE-sponge-proteins/tests/Docker/Dockerfile_work
deleted file mode 100644
index e84268271b382408c29a517b441c80bfc5f0cdb3..0000000000000000000000000000000000000000
--- a/projects/CoFFE-sponge-proteins/tests/Docker/Dockerfile_work
+++ /dev/null
@@ -1,47 +0,0 @@
-ARG VERSION_OST="2.3.0"
-FROM registry.scicore.unibas.ch/schwede/openstructure:${VERSION_OST}
-# We need to declare ARGs again which were declared before the build stage
-# (FROM directive), otherwise they won't be available in this stage.
-ARG VERSION_OST
-
-## Set up environment
-ENV SRC_DIR="/tmp" \
- VERSION_OST=${VERSION_OST} \
- PYTHONUNBUFFERED=1 \
- PYTHONDONTWRITEBYTECODE=1
-
-
-LABEL org.openstructure.base-image="${VERSION_OST}"
-LABEL org.openstructure.translate2modelcif="2022-04-08.1"
-LABEL maintainer="Stefan Bienert <stefan.bienert@unibas.ch>"
-LABEL vendor1="Schwede Group (schwedelab.org)"
-LABEL vendor2="SIB - Swiss Institute of Bioinformatics (sib.swiss)"
-LABEL vendor3="Biozentrum - University of Basel (biozentrum.unibas.ch)"
-
-
-## Install python-modelcif and python-ihm
-COPY requirements.txt ${SRC_DIR}
-WORKDIR ${SRC_DIR}
-RUN set -e pipefail; \
- apt-get update -y; \
- # for development, install venv
- apt-get install -y git pip python3.8-venv; \
- pip install -r requirements.txt; \
- # for development, install black & PyLint
- pip install black pylint; \
- git clone https://github.com/ihmwg/python-ihm.git ihm.git; \
- cd ihm.git; \
- python3 setup.py build; \
- python3 setup.py install; \
- rm -rf ${SRC_DIR}/ihm.git; \
- cd ${SRC_DIR}; \
- git clone https://github.com/ihmwg/python-modelcif.git modelcif.git; \
- cd modelcif.git; \
- python3 setup.py build; \
- python3 setup.py install; \
- rm -rf ${SRC_DIR}/modelcif.git; \
- apt-get remove -y git pip
-
-# had issues with older docker version on managed centos box...
-
-ENTRYPOINT bash
diff --git a/projects/CoFFE-sponge-proteins/tests/Docker/NOTES.txt b/projects/CoFFE-sponge-proteins/tests/Docker/NOTES.txt
deleted file mode 100644
index edc2292f130adfdf6be01c3d4651236c65c481e3..0000000000000000000000000000000000000000
--- a/projects/CoFFE-sponge-proteins/tests/Docker/NOTES.txt
+++ /dev/null
@@ -1,24 +0,0 @@
-Based on https://git.scicore.unibas.ch/schwede/ma-wilkins-import/-/tree/develop/
-
-------------------------------------
-GT versions of Docker:
-- Dockerfile_work: simplified stuff to make it work on old docker version on CentOS box
--> use Ctrl-P + Ctrl-Q to detach without closing bash and run in background...
--> "docker ps -a" and "docker attach <NAME>" to get back in and "docker logs [--tail N] <NAME>" to see output
-- Dockerfile_GT: added extra libraries and ost_ipython alias for convenience
--> pdbx.tar.gz is PDBx Python Parser as in MA (original adapted for py3)
--> NOTE: pdbx.tar.gz outdated by now, but ok (not used in the end anyway)
-------------------------------------
-docker build -f Dockerfile_GT -t modelcif_test .
-(change Dockerfile_GT to Dockerfile_work on CentOS box)
-docker run --rm -ti -v "$(pwd)":/tmp modelcif_test
--> can use "ost_ipython" in there
-docker run --rm -ti -v "$(pwd)":/tmp -p 8888:8888 --entrypoint jupyter modelcif_test notebook --ip 0.0.0.0 --no-browser --allow-root
-
-------------------------------------
-Original instructions from Bienchen:
-------------------------------------
-docker build -t matranslator:2022-07-18.1 .
-docker run --rm -i -v /Users/stefan/.bash_profile:/home/mmcif/.bash_profile -v /Users/stefan/.bash_aliases:/home/mmcif/.bash_aliases -v /Users/stefan/.bashrc:/home/mmcif/.bashrc -v /Users/stefan/Projects/ma-wilkins-import.git:/data -v /Users/stefan/Projects/ma-wilkins-import.git/.docker-bash-history:/home/mmcif/.bash_history -t matranslator:2022-07-18.1 bash
-ost translate2modelcif.py A0A1B0GTU1-O75152/
-------------------------------------
diff --git a/projects/CoFFE-sponge-proteins/tests/Docker/pdbx.tar.gz b/projects/CoFFE-sponge-proteins/tests/Docker/pdbx.tar.gz
deleted file mode 100644
index 7f5eeb918722efc3321527fb9ed7decea13d7ec4..0000000000000000000000000000000000000000
Binary files a/projects/CoFFE-sponge-proteins/tests/Docker/pdbx.tar.gz and /dev/null differ
diff --git a/projects/CoFFE-sponge-proteins/tests/Docker/requirements.txt b/projects/CoFFE-sponge-proteins/tests/Docker/requirements.txt
deleted file mode 100644
index 2abd7d3a956e774cb5b3d3765de5e9b9d66f2d96..0000000000000000000000000000000000000000
--- a/projects/CoFFE-sponge-proteins/tests/Docker/requirements.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-requests
-ujson
diff --git a/projects/CoFFE-sponge-proteins/tests/test.html b/projects/CoFFE-sponge-proteins/tests/test.html
deleted file mode 100644
index 853fd59e16a07ad8ccedfe5382a7820492710bbc..0000000000000000000000000000000000000000
--- a/projects/CoFFE-sponge-proteins/tests/test.html
+++ /dev/null
@@ -1,17126 +0,0 @@
-<!DOCTYPE html>
-<html>
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-<meta name="viewport" content="width=device-width, initial-scale=1.0">
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- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"]):disabled.bp3-active, .bp3-dark .bp3-button:not([class*="bp3-intent-"]).bp3-disabled.bp3-active{
- background:rgba(57, 75, 89, 0.7); }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"]) .bp3-button-spinner .bp3-spinner-head{
- background:rgba(16, 22, 26, 0.5);
- stroke:#8a9ba8; }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"])[class*="bp3-icon-"]::before{
- color:#a7b6c2; }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"]) .bp3-icon, .bp3-dark .bp3-button:not([class*="bp3-intent-"]) .bp3-icon-standard, .bp3-dark .bp3-button:not([class*="bp3-intent-"]) .bp3-icon-large{
- color:#a7b6c2; }
- .bp3-dark .bp3-button[class*="bp3-intent-"]{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-button[class*="bp3-intent-"]:hover{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-button[class*="bp3-intent-"]:active, .bp3-dark .bp3-button[class*="bp3-intent-"].bp3-active{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-button[class*="bp3-intent-"]:disabled, .bp3-dark .bp3-button[class*="bp3-intent-"].bp3-disabled{
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(255, 255, 255, 0.3); }
- .bp3-dark .bp3-button[class*="bp3-intent-"] .bp3-button-spinner .bp3-spinner-head{
- stroke:#8a9ba8; }
- .bp3-button:disabled::before,
- .bp3-button:disabled .bp3-icon, .bp3-button:disabled .bp3-icon-standard, .bp3-button:disabled .bp3-icon-large, .bp3-button.bp3-disabled::before,
- .bp3-button.bp3-disabled .bp3-icon, .bp3-button.bp3-disabled .bp3-icon-standard, .bp3-button.bp3-disabled .bp3-icon-large, .bp3-button[class*="bp3-intent-"]::before,
- .bp3-button[class*="bp3-intent-"] .bp3-icon, .bp3-button[class*="bp3-intent-"] .bp3-icon-standard, .bp3-button[class*="bp3-intent-"] .bp3-icon-large{
- color:inherit !important; }
- .bp3-button.bp3-minimal{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-button.bp3-minimal:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-button.bp3-minimal:active, .bp3-button.bp3-minimal.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-button.bp3-minimal:disabled, .bp3-button.bp3-minimal:disabled:hover, .bp3-button.bp3-minimal.bp3-disabled, .bp3-button.bp3-minimal.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-button.bp3-minimal:disabled.bp3-active, .bp3-button.bp3-minimal:disabled:hover.bp3-active, .bp3-button.bp3-minimal.bp3-disabled.bp3-active, .bp3-button.bp3-minimal.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-button.bp3-minimal{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-button.bp3-minimal:hover, .bp3-dark .bp3-button.bp3-minimal:active, .bp3-dark .bp3-button.bp3-minimal.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-button.bp3-minimal:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-button.bp3-minimal:active, .bp3-dark .bp3-button.bp3-minimal.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-button.bp3-minimal:disabled, .bp3-dark .bp3-button.bp3-minimal:disabled:hover, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-button.bp3-minimal:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal:disabled:hover.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-primary{
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:hover, .bp3-button.bp3-minimal.bp3-intent-primary:active, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:active, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:disabled, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-primary:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-success{
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:hover, .bp3-button.bp3-minimal.bp3-intent-success:active, .bp3-button.bp3-minimal.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:active, .bp3-button.bp3-minimal.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:disabled, .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-success:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-success .bp3-button-spinner .bp3-spinner-head{
- stroke:#0d8050; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success{
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.2);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(61, 204, 145, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-warning{
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:hover, .bp3-button.bp3-minimal.bp3-intent-warning:active, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:active, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:disabled, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(191, 115, 38, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-warning:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head{
- stroke:#bf7326; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning{
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.2);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(255, 179, 102, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-danger{
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:hover, .bp3-button.bp3-minimal.bp3-intent-danger:active, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.15);
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:active, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:disabled, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(194, 48, 48, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-danger:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-danger .bp3-button-spinner .bp3-spinner-head{
- stroke:#c23030; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger{
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.2);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(255, 115, 115, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-outlined{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- border:1px solid rgba(24, 32, 38, 0.2);
- -webkit-box-sizing:border-box;
- box-sizing:border-box; }
- .bp3-button.bp3-outlined:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-button.bp3-outlined:active, .bp3-button.bp3-outlined.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-button.bp3-outlined:disabled, .bp3-button.bp3-outlined:disabled:hover, .bp3-button.bp3-outlined.bp3-disabled, .bp3-button.bp3-outlined.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-button.bp3-outlined:disabled.bp3-active, .bp3-button.bp3-outlined:disabled:hover.bp3-active, .bp3-button.bp3-outlined.bp3-disabled.bp3-active, .bp3-button.bp3-outlined.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-button.bp3-outlined{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-button.bp3-outlined:hover, .bp3-dark .bp3-button.bp3-outlined:active, .bp3-dark .bp3-button.bp3-outlined.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-button.bp3-outlined:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-button.bp3-outlined:active, .bp3-dark .bp3-button.bp3-outlined.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-button.bp3-outlined:disabled, .bp3-dark .bp3-button.bp3-outlined:disabled:hover, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-button.bp3-outlined:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined:disabled:hover.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-primary{
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:hover, .bp3-button.bp3-outlined.bp3-intent-primary:active, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:active, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-primary:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-success{
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:hover, .bp3-button.bp3-outlined.bp3-intent-success:active, .bp3-button.bp3-outlined.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:active, .bp3-button.bp3-outlined.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-success:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-success .bp3-button-spinner .bp3-spinner-head{
- stroke:#0d8050; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success{
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.2);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(61, 204, 145, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-warning{
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:hover, .bp3-button.bp3-outlined.bp3-intent-warning:active, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:active, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(191, 115, 38, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-warning:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head{
- stroke:#bf7326; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning{
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.2);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(255, 179, 102, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-danger{
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:hover, .bp3-button.bp3-outlined.bp3-intent-danger:active, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.15);
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:active, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(194, 48, 48, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-danger:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-danger .bp3-button-spinner .bp3-spinner-head{
- stroke:#c23030; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger{
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.2);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(255, 115, 115, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-outlined:disabled, .bp3-button.bp3-outlined.bp3-disabled, .bp3-button.bp3-outlined:disabled:hover, .bp3-button.bp3-outlined.bp3-disabled:hover{
- border-color:rgba(92, 112, 128, 0.1); }
- .bp3-dark .bp3-button.bp3-outlined{
- border-color:rgba(255, 255, 255, 0.4); }
- .bp3-dark .bp3-button.bp3-outlined:disabled, .bp3-dark .bp3-button.bp3-outlined:disabled:hover, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled:hover{
- border-color:rgba(255, 255, 255, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-primary{
- border-color:rgba(16, 107, 163, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- border-color:rgba(16, 107, 163, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary{
- border-color:rgba(72, 175, 240, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- border-color:rgba(72, 175, 240, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-success{
- border-color:rgba(13, 128, 80, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- border-color:rgba(13, 128, 80, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success{
- border-color:rgba(61, 204, 145, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- border-color:rgba(61, 204, 145, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-warning{
- border-color:rgba(191, 115, 38, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- border-color:rgba(191, 115, 38, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning{
- border-color:rgba(255, 179, 102, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- border-color:rgba(255, 179, 102, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-danger{
- border-color:rgba(194, 48, 48, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- border-color:rgba(194, 48, 48, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger{
- border-color:rgba(255, 115, 115, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- border-color:rgba(255, 115, 115, 0.2); }
-
-a.bp3-button{
- text-align:center;
- text-decoration:none;
- -webkit-transition:none;
- transition:none; }
- a.bp3-button, a.bp3-button:hover, a.bp3-button:active{
- color:#182026; }
- a.bp3-button.bp3-disabled{
- color:rgba(92, 112, 128, 0.6); }
-
-.bp3-button-text{
- -webkit-box-flex:0;
- -ms-flex:0 1 auto;
- flex:0 1 auto; }
-
-.bp3-button.bp3-align-left .bp3-button-text, .bp3-button.bp3-align-right .bp3-button-text,
-.bp3-button-group.bp3-align-left .bp3-button-text,
-.bp3-button-group.bp3-align-right .bp3-button-text{
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto; }
-.bp3-button-group{
- display:-webkit-inline-box;
- display:-ms-inline-flexbox;
- display:inline-flex; }
- .bp3-button-group .bp3-button{
- -webkit-box-flex:0;
- -ms-flex:0 0 auto;
- flex:0 0 auto;
- position:relative;
- z-index:4; }
- .bp3-button-group .bp3-button:focus{
- z-index:5; }
- .bp3-button-group .bp3-button:hover{
- z-index:6; }
- .bp3-button-group .bp3-button:active, .bp3-button-group .bp3-button.bp3-active{
- z-index:7; }
- .bp3-button-group .bp3-button:disabled, .bp3-button-group .bp3-button.bp3-disabled{
- z-index:3; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]{
- z-index:9; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:focus{
- z-index:10; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:hover{
- z-index:11; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:active, .bp3-button-group .bp3-button[class*="bp3-intent-"].bp3-active{
- z-index:12; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:disabled, .bp3-button-group .bp3-button[class*="bp3-intent-"].bp3-disabled{
- z-index:8; }
- .bp3-button-group:not(.bp3-minimal) > .bp3-popover-wrapper:not(:first-child) .bp3-button,
- .bp3-button-group:not(.bp3-minimal) > .bp3-button:not(:first-child){
- border-bottom-left-radius:0;
- border-top-left-radius:0; }
- .bp3-button-group:not(.bp3-minimal) > .bp3-popover-wrapper:not(:last-child) .bp3-button,
- .bp3-button-group:not(.bp3-minimal) > .bp3-button:not(:last-child){
- border-bottom-right-radius:0;
- border-top-right-radius:0;
- margin-right:-1px; }
- .bp3-button-group.bp3-minimal .bp3-button{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-button-group.bp3-minimal .bp3-button:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-button-group.bp3-minimal .bp3-button:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-button-group.bp3-minimal .bp3-button:disabled, .bp3-button-group.bp3-minimal .bp3-button:disabled:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-button-group.bp3-minimal .bp3-button:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button:disabled:hover.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:hover, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled:hover, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled:hover.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary{
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success{
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success .bp3-button-spinner .bp3-spinner-head{
- stroke:#0d8050; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success{
- color:#3dcc91; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.2);
- color:#3dcc91; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#3dcc91; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(61, 204, 145, 0.5); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning{
- color:#bf7326; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#bf7326; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#bf7326; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(191, 115, 38, 0.5); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head{
- stroke:#bf7326; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning{
- color:#ffb366; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.2);
- color:#ffb366; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#ffb366; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(255, 179, 102, 0.5); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger{
- color:#c23030; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#c23030; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.15);
- color:#c23030; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#c23030; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(194, 48, 48, 0.5); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger .bp3-button-spinner .bp3-spinner-head{
- stroke:#c23030; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger{
- color:#ff7373; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.2);
- color:#ff7373; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#ff7373; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(255, 115, 115, 0.5); }
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- color:#f5f8fa; }
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- color:#db3737; }
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- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(255, 255, 255, 0.15); }
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- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
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- .bp3-dark .bp3-editable-text.bp3-disabled::before{
- -webkit-box-shadow:none;
- box-shadow:none; }
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- color:#48aff0; }
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- box-shadow:0 0 0 0 rgba(72, 175, 240, 0), 0 0 0 0 rgba(72, 175, 240, 0), inset 0 0 0 1px rgba(72, 175, 240, 0.4); }
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- box-shadow:0 0 0 0 rgba(61, 204, 145, 0), 0 0 0 0 rgba(61, 204, 145, 0), inset 0 0 0 1px rgba(61, 204, 145, 0.4); }
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- box-shadow:0 0 0 1px #3dcc91, 0 0 0 3px rgba(61, 204, 145, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
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- color:#ffb366; }
- .bp3-dark .bp3-editable-text.bp3-intent-warning:hover::before{
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- box-shadow:0 0 0 0 rgba(255, 179, 102, 0), 0 0 0 0 rgba(255, 179, 102, 0), inset 0 0 0 1px rgba(255, 179, 102, 0.4); }
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- box-shadow:0 0 0 1px #ffb366, 0 0 0 3px rgba(255, 179, 102, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-editable-text.bp3-intent-danger .bp3-editable-text-content{
- color:#ff7373; }
- .bp3-dark .bp3-editable-text.bp3-intent-danger:hover::before{
- -webkit-box-shadow:0 0 0 0 rgba(255, 115, 115, 0), 0 0 0 0 rgba(255, 115, 115, 0), inset 0 0 0 1px rgba(255, 115, 115, 0.4);
- box-shadow:0 0 0 0 rgba(255, 115, 115, 0), 0 0 0 0 rgba(255, 115, 115, 0), inset 0 0 0 1px rgba(255, 115, 115, 0.4); }
- .bp3-dark .bp3-editable-text.bp3-intent-danger.bp3-editable-text-editing::before{
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- box-shadow:0 0 0 1px #ff7373, 0 0 0 3px rgba(255, 115, 115, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
-
-.bp3-editable-text-input,
-.bp3-editable-text-content{
- color:inherit;
- display:inherit;
- font:inherit;
- letter-spacing:inherit;
- max-width:inherit;
- min-width:inherit;
- position:relative;
- resize:none;
- text-transform:inherit;
- vertical-align:top; }
-
-.bp3-editable-text-input{
- background:none;
- border:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- padding:0;
- white-space:pre-wrap;
- width:100%; }
- .bp3-editable-text-input::-webkit-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-editable-text-input::-moz-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-editable-text-input:-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-editable-text-input::-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-editable-text-input::placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-editable-text-input:focus{
- outline:none; }
- .bp3-editable-text-input::-ms-clear{
- display:none; }
-
-.bp3-editable-text-content{
- overflow:hidden;
- padding-right:2px;
- text-overflow:ellipsis;
- white-space:pre; }
- .bp3-editable-text-editing > .bp3-editable-text-content{
- left:0;
- position:absolute;
- visibility:hidden; }
- .bp3-editable-text-placeholder > .bp3-editable-text-content{
- color:rgba(92, 112, 128, 0.6); }
- .bp3-dark .bp3-editable-text-placeholder > .bp3-editable-text-content{
- color:rgba(167, 182, 194, 0.6); }
-
-.bp3-editable-text.bp3-multiline{
- display:block; }
- .bp3-editable-text.bp3-multiline .bp3-editable-text-content{
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- white-space:pre-wrap;
- word-wrap:break-word; }
-.bp3-divider{
- border-bottom:1px solid rgba(16, 22, 26, 0.15);
- border-right:1px solid rgba(16, 22, 26, 0.15);
- margin:5px; }
- .bp3-dark .bp3-divider{
- border-color:rgba(16, 22, 26, 0.4); }
-.bp3-control-group{
- -webkit-transform:translateZ(0);
- transform:translateZ(0);
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- -webkit-box-orient:horizontal;
- -webkit-box-direction:normal;
- -ms-flex-direction:row;
- flex-direction:row;
- -webkit-box-align:stretch;
- -ms-flex-align:stretch;
- align-items:stretch; }
- .bp3-control-group > *{
- -webkit-box-flex:0;
- -ms-flex-positive:0;
- flex-grow:0;
- -ms-flex-negative:0;
- flex-shrink:0; }
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- -webkit-box-flex:1;
- -ms-flex-positive:1;
- flex-grow:1;
- -ms-flex-negative:1;
- flex-shrink:1; }
- .bp3-control-group .bp3-button,
- .bp3-control-group .bp3-html-select,
- .bp3-control-group .bp3-input,
- .bp3-control-group .bp3-select{
- position:relative; }
- .bp3-control-group .bp3-input{
- border-radius:inherit;
- z-index:2; }
- .bp3-control-group .bp3-input:focus{
- border-radius:3px;
- z-index:14; }
- .bp3-control-group .bp3-input[class*="bp3-intent"]{
- z-index:13; }
- .bp3-control-group .bp3-input[class*="bp3-intent"]:focus{
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- .bp3-control-group .bp3-input[readonly], .bp3-control-group .bp3-input:disabled, .bp3-control-group .bp3-input.bp3-disabled{
- z-index:1; }
- .bp3-control-group .bp3-input-group[class*="bp3-intent"] .bp3-input{
- z-index:13; }
- .bp3-control-group .bp3-input-group[class*="bp3-intent"] .bp3-input:focus{
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- .bp3-control-group .bp3-html-select select,
- .bp3-control-group .bp3-select select{
- -webkit-transform:translateZ(0);
- transform:translateZ(0);
- border-radius:inherit;
- z-index:4; }
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- .bp3-control-group .bp3-select select:focus{
- z-index:5; }
- .bp3-control-group .bp3-button:hover,
- .bp3-control-group .bp3-html-select select:hover,
- .bp3-control-group .bp3-select select:hover{
- z-index:6; }
- .bp3-control-group .bp3-button:active,
- .bp3-control-group .bp3-html-select select:active,
- .bp3-control-group .bp3-select select:active{
- z-index:7; }
- .bp3-control-group .bp3-button[readonly], .bp3-control-group .bp3-button:disabled, .bp3-control-group .bp3-button.bp3-disabled,
- .bp3-control-group .bp3-html-select select[readonly],
- .bp3-control-group .bp3-html-select select:disabled,
- .bp3-control-group .bp3-html-select select.bp3-disabled,
- .bp3-control-group .bp3-select select[readonly],
- .bp3-control-group .bp3-select select:disabled,
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- z-index:3; }
- .bp3-control-group .bp3-button[class*="bp3-intent"],
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- .bp3-control-group .bp3-select select[class*="bp3-intent"]{
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- .bp3-control-group .bp3-button[class*="bp3-intent"]:focus,
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- .bp3-control-group .bp3-select select[class*="bp3-intent"]:focus{
- z-index:10; }
- .bp3-control-group .bp3-button[class*="bp3-intent"]:hover,
- .bp3-control-group .bp3-html-select select[class*="bp3-intent"]:hover,
- .bp3-control-group .bp3-select select[class*="bp3-intent"]:hover{
- z-index:11; }
- .bp3-control-group .bp3-button[class*="bp3-intent"]:active,
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- z-index:12; }
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- .bp3-control-group .bp3-html-select select[class*="bp3-intent"][readonly],
- .bp3-control-group .bp3-html-select select[class*="bp3-intent"]:disabled,
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- .bp3-control-group .bp3-select select[class*="bp3-intent"][readonly],
- .bp3-control-group .bp3-select select[class*="bp3-intent"]:disabled,
- .bp3-control-group .bp3-select select[class*="bp3-intent"].bp3-disabled{
- z-index:8; }
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- .bp3-control-group .bp3-input-group > .bp3-button,
- .bp3-control-group .bp3-input-group > .bp3-input-left-container,
- .bp3-control-group .bp3-input-group > .bp3-input-action{
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- .bp3-control-group .bp3-html-select::after,
- .bp3-control-group .bp3-select > .bp3-icon,
- .bp3-control-group .bp3-html-select > .bp3-icon{
- z-index:17; }
- .bp3-control-group .bp3-select:focus-within{
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- .bp3-control-group:not(.bp3-vertical) > *:not(.bp3-divider){
- margin-right:-1px; }
- .bp3-control-group:not(.bp3-vertical) > .bp3-divider:not(:first-child){
- margin-left:6px; }
- .bp3-dark .bp3-control-group:not(.bp3-vertical) > *:not(.bp3-divider){
- margin-right:0; }
- .bp3-dark .bp3-control-group:not(.bp3-vertical) > .bp3-button + .bp3-button{
- margin-left:1px; }
- .bp3-control-group .bp3-popover-wrapper,
- .bp3-control-group .bp3-popover-target{
- border-radius:inherit; }
- .bp3-control-group > :first-child{
- border-radius:3px 0 0 3px; }
- .bp3-control-group > :last-child{
- border-radius:0 3px 3px 0;
- margin-right:0; }
- .bp3-control-group > :only-child{
- border-radius:3px;
- margin-right:0; }
- .bp3-control-group .bp3-input-group .bp3-button{
- border-radius:3px; }
- .bp3-control-group .bp3-numeric-input:not(:first-child) .bp3-input-group{
- border-bottom-left-radius:0;
- border-top-left-radius:0; }
- .bp3-control-group.bp3-fill{
- width:100%; }
- .bp3-control-group > .bp3-fill{
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto; }
- .bp3-control-group.bp3-fill > *:not(.bp3-fixed){
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto; }
- .bp3-control-group.bp3-vertical{
- -webkit-box-orient:vertical;
- -webkit-box-direction:normal;
- -ms-flex-direction:column;
- flex-direction:column; }
- .bp3-control-group.bp3-vertical > *{
- margin-top:-1px; }
- .bp3-control-group.bp3-vertical > :first-child{
- border-radius:3px 3px 0 0;
- margin-top:0; }
- .bp3-control-group.bp3-vertical > :last-child{
- border-radius:0 0 3px 3px; }
-.bp3-control{
- cursor:pointer;
- display:block;
- margin-bottom:10px;
- position:relative;
- text-transform:none; }
- .bp3-control input:checked ~ .bp3-control-indicator{
- background-color:#137cbd;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.1)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.1), rgba(255, 255, 255, 0));
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- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- color:#ffffff; }
- .bp3-control:hover input:checked ~ .bp3-control-indicator{
- background-color:#106ba3;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2); }
- .bp3-control input:not(:disabled):active:checked ~ .bp3-control-indicator{
- background:#0e5a8a;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-control input:disabled:checked ~ .bp3-control-indicator{
- background:rgba(19, 124, 189, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-control input:checked ~ .bp3-control-indicator{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control:hover input:checked ~ .bp3-control-indicator{
- background-color:#106ba3;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
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- background-color:#0e5a8a;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-control input:disabled:checked ~ .bp3-control-indicator{
- background:rgba(14, 90, 138, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-control:not(.bp3-align-right){
- padding-left:26px; }
- .bp3-control:not(.bp3-align-right) .bp3-control-indicator{
- margin-left:-26px; }
- .bp3-control.bp3-align-right{
- padding-right:26px; }
- .bp3-control.bp3-align-right .bp3-control-indicator{
- margin-right:-26px; }
- .bp3-control.bp3-disabled{
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-control.bp3-inline{
- display:inline-block;
- margin-right:20px; }
- .bp3-control input{
- left:0;
- opacity:0;
- position:absolute;
- top:0;
- z-index:-1; }
- .bp3-control .bp3-control-indicator{
- background-clip:padding-box;
- background-color:#f5f8fa;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.8)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.8), rgba(255, 255, 255, 0));
- border:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- cursor:pointer;
- display:inline-block;
- font-size:16px;
- height:1em;
- margin-right:10px;
- margin-top:-3px;
- position:relative;
- -webkit-user-select:none;
- -moz-user-select:none;
- -ms-user-select:none;
- user-select:none;
- vertical-align:middle;
- width:1em; }
- .bp3-control .bp3-control-indicator::before{
- content:"";
- display:block;
- height:1em;
- width:1em; }
- .bp3-control:hover .bp3-control-indicator{
- background-color:#ebf1f5; }
- .bp3-control input:not(:disabled):active ~ .bp3-control-indicator{
- background:#d8e1e8;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-control input:disabled ~ .bp3-control-indicator{
- background:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- cursor:not-allowed; }
- .bp3-control input:focus ~ .bp3-control-indicator{
- outline:rgba(19, 124, 189, 0.6) auto 2px;
- outline-offset:2px;
- -moz-outline-radius:6px; }
- .bp3-control.bp3-align-right .bp3-control-indicator{
- float:right;
- margin-left:10px;
- margin-top:1px; }
- .bp3-control.bp3-large{
- font-size:16px; }
- .bp3-control.bp3-large:not(.bp3-align-right){
- padding-left:30px; }
- .bp3-control.bp3-large:not(.bp3-align-right) .bp3-control-indicator{
- margin-left:-30px; }
- .bp3-control.bp3-large.bp3-align-right{
- padding-right:30px; }
- .bp3-control.bp3-large.bp3-align-right .bp3-control-indicator{
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- .bp3-control.bp3-large .bp3-control-indicator{
- font-size:20px; }
- .bp3-control.bp3-large.bp3-align-right .bp3-control-indicator{
- margin-top:0; }
- .bp3-control.bp3-checkbox input:indeterminate ~ .bp3-control-indicator{
- background-color:#137cbd;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.1)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.1), rgba(255, 255, 255, 0));
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- color:#ffffff; }
- .bp3-control.bp3-checkbox:hover input:indeterminate ~ .bp3-control-indicator{
- background-color:#106ba3;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2); }
- .bp3-control.bp3-checkbox input:not(:disabled):active:indeterminate ~ .bp3-control-indicator{
- background:#0e5a8a;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-control.bp3-checkbox input:disabled:indeterminate ~ .bp3-control-indicator{
- background:rgba(19, 124, 189, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-control.bp3-checkbox input:indeterminate ~ .bp3-control-indicator{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-checkbox:hover input:indeterminate ~ .bp3-control-indicator{
- background-color:#106ba3;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-checkbox input:not(:disabled):active:indeterminate ~ .bp3-control-indicator{
- background-color:#0e5a8a;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-control.bp3-checkbox input:disabled:indeterminate ~ .bp3-control-indicator{
- background:rgba(14, 90, 138, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-control.bp3-checkbox .bp3-control-indicator{
- border-radius:3px; }
- .bp3-control.bp3-checkbox input:checked ~ .bp3-control-indicator::before{
- background-image:url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16'%3e%3cpath fill-rule='evenodd' clip-rule='evenodd' d='M12 5c-.28 0-.53.11-.71.29L7 9.59l-2.29-2.3a1.003 1.003 0 00-1.42 1.42l3 3c.18.18.43.29.71.29s.53-.11.71-.29l5-5A1.003 1.003 0 0012 5z' fill='white'/%3e%3c/svg%3e"); }
- .bp3-control.bp3-checkbox input:indeterminate ~ .bp3-control-indicator::before{
- background-image:url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16'%3e%3cpath fill-rule='evenodd' clip-rule='evenodd' d='M11 7H5c-.55 0-1 .45-1 1s.45 1 1 1h6c.55 0 1-.45 1-1s-.45-1-1-1z' fill='white'/%3e%3c/svg%3e"); }
- .bp3-control.bp3-radio .bp3-control-indicator{
- border-radius:50%; }
- .bp3-control.bp3-radio input:checked ~ .bp3-control-indicator::before{
- background-image:radial-gradient(#ffffff, #ffffff 28%, transparent 32%); }
- .bp3-control.bp3-radio input:checked:disabled ~ .bp3-control-indicator::before{
- opacity:0.5; }
- .bp3-control.bp3-radio input:focus ~ .bp3-control-indicator{
- -moz-outline-radius:16px; }
- .bp3-control.bp3-switch input ~ .bp3-control-indicator{
- background:rgba(167, 182, 194, 0.5); }
- .bp3-control.bp3-switch:hover input ~ .bp3-control-indicator{
- background:rgba(115, 134, 148, 0.5); }
- .bp3-control.bp3-switch input:not(:disabled):active ~ .bp3-control-indicator{
- background:rgba(92, 112, 128, 0.5); }
- .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator{
- background:rgba(206, 217, 224, 0.5); }
- .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator::before{
- background:rgba(255, 255, 255, 0.8); }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator{
- background:#137cbd; }
- .bp3-control.bp3-switch:hover input:checked ~ .bp3-control-indicator{
- background:#106ba3; }
- .bp3-control.bp3-switch input:checked:not(:disabled):active ~ .bp3-control-indicator{
- background:#0e5a8a; }
- .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator{
- background:rgba(19, 124, 189, 0.5); }
- .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator::before{
- background:rgba(255, 255, 255, 0.8); }
- .bp3-control.bp3-switch:not(.bp3-align-right){
- padding-left:38px; }
- .bp3-control.bp3-switch:not(.bp3-align-right) .bp3-control-indicator{
- margin-left:-38px; }
- .bp3-control.bp3-switch.bp3-align-right{
- padding-right:38px; }
- .bp3-control.bp3-switch.bp3-align-right .bp3-control-indicator{
- margin-right:-38px; }
- .bp3-control.bp3-switch .bp3-control-indicator{
- border:none;
- border-radius:1.75em;
- -webkit-box-shadow:none !important;
- box-shadow:none !important;
- min-width:1.75em;
- -webkit-transition:background-color 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:background-color 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- width:auto; }
- .bp3-control.bp3-switch .bp3-control-indicator::before{
- background:#ffffff;
- border-radius:50%;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 1px 1px rgba(16, 22, 26, 0.2);
- height:calc(1em - 4px);
- left:0;
- margin:2px;
- position:absolute;
- -webkit-transition:left 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:left 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- width:calc(1em - 4px); }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator::before{
- left:calc(100% - 1em); }
- .bp3-control.bp3-switch.bp3-large:not(.bp3-align-right){
- padding-left:45px; }
- .bp3-control.bp3-switch.bp3-large:not(.bp3-align-right) .bp3-control-indicator{
- margin-left:-45px; }
- .bp3-control.bp3-switch.bp3-large.bp3-align-right{
- padding-right:45px; }
- .bp3-control.bp3-switch.bp3-large.bp3-align-right .bp3-control-indicator{
- margin-right:-45px; }
- .bp3-dark .bp3-control.bp3-switch input ~ .bp3-control-indicator{
- background:rgba(16, 22, 26, 0.5); }
- .bp3-dark .bp3-control.bp3-switch:hover input ~ .bp3-control-indicator{
- background:rgba(16, 22, 26, 0.7); }
- .bp3-dark .bp3-control.bp3-switch input:not(:disabled):active ~ .bp3-control-indicator{
- background:rgba(16, 22, 26, 0.9); }
- .bp3-dark .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator{
- background:rgba(57, 75, 89, 0.5); }
- .bp3-dark .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator::before{
- background:rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator{
- background:#137cbd; }
- .bp3-dark .bp3-control.bp3-switch:hover input:checked ~ .bp3-control-indicator{
- background:#106ba3; }
- .bp3-dark .bp3-control.bp3-switch input:checked:not(:disabled):active ~ .bp3-control-indicator{
- background:#0e5a8a; }
- .bp3-dark .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator{
- background:rgba(14, 90, 138, 0.5); }
- .bp3-dark .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator::before{
- background:rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-switch .bp3-control-indicator::before{
- background:#394b59;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator::before{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-control.bp3-switch .bp3-switch-inner-text{
- font-size:0.7em;
- text-align:center; }
- .bp3-control.bp3-switch .bp3-control-indicator-child:first-child{
- line-height:0;
- margin-left:0.5em;
- margin-right:1.2em;
- visibility:hidden; }
- .bp3-control.bp3-switch .bp3-control-indicator-child:last-child{
- line-height:1em;
- margin-left:1.2em;
- margin-right:0.5em;
- visibility:visible; }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator .bp3-control-indicator-child:first-child{
- line-height:1em;
- visibility:visible; }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator .bp3-control-indicator-child:last-child{
- line-height:0;
- visibility:hidden; }
- .bp3-dark .bp3-control{
- color:#f5f8fa; }
- .bp3-dark .bp3-control.bp3-disabled{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-control .bp3-control-indicator{
- background-color:#394b59;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.05)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.05), rgba(255, 255, 255, 0));
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control:hover .bp3-control-indicator{
- background-color:#30404d; }
- .bp3-dark .bp3-control input:not(:disabled):active ~ .bp3-control-indicator{
- background:#202b33;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-control input:disabled ~ .bp3-control-indicator{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- cursor:not-allowed; }
- .bp3-dark .bp3-control.bp3-checkbox input:disabled:checked ~ .bp3-control-indicator, .bp3-dark .bp3-control.bp3-checkbox input:disabled:indeterminate ~ .bp3-control-indicator{
- color:rgba(167, 182, 194, 0.6); }
-.bp3-file-input{
- cursor:pointer;
- display:inline-block;
- height:30px;
- position:relative; }
- .bp3-file-input input{
- margin:0;
- min-width:200px;
- opacity:0; }
- .bp3-file-input input:disabled + .bp3-file-upload-input,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input{
- background:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- resize:none; }
- .bp3-file-input input:disabled + .bp3-file-upload-input::after,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after{
- background-color:rgba(206, 217, 224, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- outline:none; }
- .bp3-file-input input:disabled + .bp3-file-upload-input::after.bp3-active, .bp3-file-input input:disabled + .bp3-file-upload-input::after.bp3-active:hover,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after.bp3-active,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after.bp3-active:hover{
- background:rgba(206, 217, 224, 0.7); }
- .bp3-dark .bp3-file-input input:disabled + .bp3-file-upload-input, .bp3-dark
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-input input:disabled + .bp3-file-upload-input::after, .bp3-dark
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after{
- background-color:rgba(57, 75, 89, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-input input:disabled + .bp3-file-upload-input::after.bp3-active, .bp3-dark
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after.bp3-active{
- background:rgba(57, 75, 89, 0.7); }
- .bp3-file-input.bp3-file-input-has-selection .bp3-file-upload-input{
- color:#182026; }
- .bp3-dark .bp3-file-input.bp3-file-input-has-selection .bp3-file-upload-input{
- color:#f5f8fa; }
- .bp3-file-input.bp3-fill{
- width:100%; }
- .bp3-file-input.bp3-large,
- .bp3-large .bp3-file-input{
- height:40px; }
- .bp3-file-input .bp3-file-upload-input-custom-text::after{
- content:attr(bp3-button-text); }
-
-.bp3-file-upload-input{
- -webkit-appearance:none;
- -moz-appearance:none;
- appearance:none;
- background:#ffffff;
- border:none;
- border-radius:3px;
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- color:#182026;
- font-size:14px;
- font-weight:400;
- height:30px;
- line-height:30px;
- outline:none;
- padding:0 10px;
- -webkit-transition:-webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:-webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9), -webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- vertical-align:middle;
- overflow:hidden;
- text-overflow:ellipsis;
- white-space:nowrap;
- word-wrap:normal;
- color:rgba(92, 112, 128, 0.6);
- left:0;
- padding-right:80px;
- position:absolute;
- right:0;
- top:0;
- -webkit-user-select:none;
- -moz-user-select:none;
- -ms-user-select:none;
- user-select:none; }
- .bp3-file-upload-input::-webkit-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input::-moz-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input:-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input::-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input::placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input:focus, .bp3-file-upload-input.bp3-active{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-file-upload-input[type="search"], .bp3-file-upload-input.bp3-round{
- border-radius:30px;
- -webkit-box-sizing:border-box;
- box-sizing:border-box;
- padding-left:10px; }
- .bp3-file-upload-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.15);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.15); }
- .bp3-file-upload-input:disabled, .bp3-file-upload-input.bp3-disabled{
- background:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- resize:none; }
- .bp3-file-upload-input::after{
- background-color:#f5f8fa;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.8)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.8), rgba(255, 255, 255, 0));
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- color:#182026;
- min-height:24px;
- min-width:24px;
- overflow:hidden;
- text-overflow:ellipsis;
- white-space:nowrap;
- word-wrap:normal;
- border-radius:3px;
- content:"Browse";
- line-height:24px;
- margin:3px;
- position:absolute;
- right:0;
- text-align:center;
- top:0;
- width:70px; }
- .bp3-file-upload-input::after:hover{
- background-clip:padding-box;
- background-color:#ebf1f5;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
- .bp3-file-upload-input::after:active, .bp3-file-upload-input::after.bp3-active{
- background-color:#d8e1e8;
- background-image:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-file-upload-input::after:disabled, .bp3-file-upload-input::after.bp3-disabled{
- background-color:rgba(206, 217, 224, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- outline:none; }
- .bp3-file-upload-input::after:disabled.bp3-active, .bp3-file-upload-input::after:disabled.bp3-active:hover, .bp3-file-upload-input::after.bp3-disabled.bp3-active, .bp3-file-upload-input::after.bp3-disabled.bp3-active:hover{
- background:rgba(206, 217, 224, 0.7); }
- .bp3-file-upload-input:hover::after{
- background-clip:padding-box;
- background-color:#ebf1f5;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
- .bp3-file-upload-input:active::after{
- background-color:#d8e1e8;
- background-image:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-large .bp3-file-upload-input{
- font-size:16px;
- height:40px;
- line-height:40px;
- padding-right:95px; }
- .bp3-large .bp3-file-upload-input[type="search"], .bp3-large .bp3-file-upload-input.bp3-round{
- padding:0 15px; }
- .bp3-large .bp3-file-upload-input::after{
- min-height:30px;
- min-width:30px;
- line-height:30px;
- margin:5px;
- width:85px; }
- .bp3-dark .bp3-file-upload-input{
- background:rgba(16, 22, 26, 0.3);
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::-webkit-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::-moz-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input:-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-file-upload-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-file-upload-input:disabled, .bp3-dark .bp3-file-upload-input.bp3-disabled{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::after{
- background-color:#394b59;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.05)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.05), rgba(255, 255, 255, 0));
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa; }
- .bp3-dark .bp3-file-upload-input::after:hover, .bp3-dark .bp3-file-upload-input::after:active, .bp3-dark .bp3-file-upload-input::after.bp3-active{
- color:#f5f8fa; }
- .bp3-dark .bp3-file-upload-input::after:hover{
- background-color:#30404d;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-file-upload-input::after:active, .bp3-dark .bp3-file-upload-input::after.bp3-active{
- background-color:#202b33;
- background-image:none;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-file-upload-input::after:disabled, .bp3-dark .bp3-file-upload-input::after.bp3-disabled{
- background-color:rgba(57, 75, 89, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::after:disabled.bp3-active, .bp3-dark .bp3-file-upload-input::after.bp3-disabled.bp3-active{
- background:rgba(57, 75, 89, 0.7); }
- .bp3-dark .bp3-file-upload-input::after .bp3-button-spinner .bp3-spinner-head{
- background:rgba(16, 22, 26, 0.5);
- stroke:#8a9ba8; }
- .bp3-dark .bp3-file-upload-input:hover::after{
- background-color:#30404d;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-file-upload-input:active::after{
- background-color:#202b33;
- background-image:none;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
-.bp3-file-upload-input::after{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
-.bp3-form-group{
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- -webkit-box-orient:vertical;
- -webkit-box-direction:normal;
- -ms-flex-direction:column;
- flex-direction:column;
- margin:0 0 15px; }
- .bp3-form-group label.bp3-label{
- margin-bottom:5px; }
- .bp3-form-group .bp3-control{
- margin-top:7px; }
- .bp3-form-group .bp3-form-helper-text{
- color:#5c7080;
- font-size:12px;
- margin-top:5px; }
- .bp3-form-group.bp3-intent-primary .bp3-form-helper-text{
- color:#106ba3; }
- .bp3-form-group.bp3-intent-success .bp3-form-helper-text{
- color:#0d8050; }
- .bp3-form-group.bp3-intent-warning .bp3-form-helper-text{
- color:#bf7326; }
- .bp3-form-group.bp3-intent-danger .bp3-form-helper-text{
- color:#c23030; }
- .bp3-form-group.bp3-inline{
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- -ms-flex-align:start;
- align-items:flex-start;
- -webkit-box-orient:horizontal;
- -webkit-box-direction:normal;
- -ms-flex-direction:row;
- flex-direction:row; }
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- line-height:40px;
- margin:0 10px 0 0; }
- .bp3-form-group.bp3-inline label.bp3-label{
- line-height:30px;
- margin:0 10px 0 0; }
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- .bp3-form-group.bp3-disabled .bp3-text-muted,
- .bp3-form-group.bp3-disabled .bp3-form-helper-text{
- color:rgba(92, 112, 128, 0.6) !important; }
- .bp3-dark .bp3-form-group.bp3-intent-primary .bp3-form-helper-text{
- color:#48aff0; }
- .bp3-dark .bp3-form-group.bp3-intent-success .bp3-form-helper-text{
- color:#3dcc91; }
- .bp3-dark .bp3-form-group.bp3-intent-warning .bp3-form-helper-text{
- color:#ffb366; }
- .bp3-dark .bp3-form-group.bp3-intent-danger .bp3-form-helper-text{
- color:#ff7373; }
- .bp3-dark .bp3-form-group .bp3-form-helper-text{
- color:#a7b6c2; }
- .bp3-dark .bp3-form-group.bp3-disabled .bp3-label,
- .bp3-dark .bp3-form-group.bp3-disabled .bp3-text-muted,
- .bp3-dark .bp3-form-group.bp3-disabled .bp3-form-helper-text{
- color:rgba(167, 182, 194, 0.6) !important; }
-.bp3-input-group{
- display:block;
- position:relative; }
- .bp3-input-group .bp3-input{
- position:relative;
- width:100%; }
- .bp3-input-group .bp3-input:not(:first-child){
- padding-left:30px; }
- .bp3-input-group .bp3-input:not(:last-child){
- padding-right:30px; }
- .bp3-input-group .bp3-input-action,
- .bp3-input-group > .bp3-input-left-container,
- .bp3-input-group > .bp3-button,
- .bp3-input-group > .bp3-icon{
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- top:0; }
- .bp3-input-group .bp3-input-action:first-child,
- .bp3-input-group > .bp3-input-left-container:first-child,
- .bp3-input-group > .bp3-button:first-child,
- .bp3-input-group > .bp3-icon:first-child{
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- .bp3-input-group .bp3-input-action:last-child,
- .bp3-input-group > .bp3-input-left-container:last-child,
- .bp3-input-group > .bp3-button:last-child,
- .bp3-input-group > .bp3-icon:last-child{
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- min-height:24px;
- min-width:24px;
- margin:3px;
- padding:0 7px; }
- .bp3-input-group .bp3-button:empty{
- padding:0; }
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- .bp3-input-group > .bp3-icon{
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- .bp3-input-group > .bp3-input-left-container > .bp3-icon,
- .bp3-input-group > .bp3-icon{
- color:#5c7080; }
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- .bp3-input-group > .bp3-icon:empty{
- font-family:"Icons16", sans-serif;
- font-size:16px;
- font-style:normal;
- font-weight:400;
- line-height:1;
- -moz-osx-font-smoothing:grayscale;
- -webkit-font-smoothing:antialiased; }
- .bp3-input-group > .bp3-input-left-container > .bp3-icon,
- .bp3-input-group > .bp3-icon,
- .bp3-input-group .bp3-input-action > .bp3-spinner{
- margin:7px; }
- .bp3-input-group .bp3-tag{
- margin:5px; }
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- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:not(:hover):not(:focus){
- color:#5c7080; }
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- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:not(:hover):not(:focus){
- color:#a7b6c2; }
- .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon, .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon-standard, .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon-large,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon-standard,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon-large{
- color:#5c7080; }
- .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:disabled,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:disabled{
- color:rgba(92, 112, 128, 0.6) !important; }
- .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:disabled .bp3-icon, .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:disabled .bp3-icon-standard, .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:disabled .bp3-icon-large,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:disabled .bp3-icon,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:disabled .bp3-icon-standard,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:disabled .bp3-icon-large{
- color:rgba(92, 112, 128, 0.6) !important; }
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- cursor:not-allowed; }
- .bp3-input-group.bp3-disabled .bp3-icon{
- color:rgba(92, 112, 128, 0.6); }
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- min-height:30px;
- min-width:30px;
- margin:5px; }
- .bp3-input-group.bp3-large > .bp3-input-left-container > .bp3-icon,
- .bp3-input-group.bp3-large > .bp3-icon,
- .bp3-input-group.bp3-large .bp3-input-action > .bp3-spinner{
- margin:12px; }
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- font-size:16px;
- height:40px;
- line-height:40px; }
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- padding:0 15px; }
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- padding-left:40px; }
- .bp3-input-group.bp3-large .bp3-input:not(:last-child){
- padding-right:40px; }
- .bp3-input-group.bp3-small .bp3-button{
- min-height:20px;
- min-width:20px;
- margin:2px; }
- .bp3-input-group.bp3-small .bp3-tag{
- min-height:20px;
- min-width:20px;
- margin:2px; }
- .bp3-input-group.bp3-small > .bp3-input-left-container > .bp3-icon,
- .bp3-input-group.bp3-small > .bp3-icon,
- .bp3-input-group.bp3-small .bp3-input-action > .bp3-spinner{
- margin:4px; }
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- font-size:12px;
- height:24px;
- line-height:24px;
- padding-left:8px;
- padding-right:8px; }
- .bp3-input-group.bp3-small .bp3-input[type="search"], .bp3-input-group.bp3-small .bp3-input.bp3-round{
- padding:0 12px; }
- .bp3-input-group.bp3-small .bp3-input:not(:first-child){
- padding-left:24px; }
- .bp3-input-group.bp3-small .bp3-input:not(:last-child){
- padding-right:24px; }
- .bp3-input-group.bp3-fill{
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto;
- width:100%; }
- .bp3-input-group.bp3-round .bp3-button,
- .bp3-input-group.bp3-round .bp3-input,
- .bp3-input-group.bp3-round .bp3-tag{
- border-radius:30px; }
- .bp3-dark .bp3-input-group .bp3-icon{
- color:#a7b6c2; }
- .bp3-dark .bp3-input-group.bp3-disabled .bp3-icon{
- color:rgba(167, 182, 194, 0.6); }
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- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input-group.bp3-intent-primary .bp3-input:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input-group.bp3-intent-primary .bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #137cbd;
- box-shadow:inset 0 0 0 1px #137cbd; }
- .bp3-input-group.bp3-intent-primary .bp3-input:disabled, .bp3-input-group.bp3-intent-primary .bp3-input.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input-group.bp3-intent-primary > .bp3-icon{
- color:#106ba3; }
- .bp3-dark .bp3-input-group.bp3-intent-primary > .bp3-icon{
- color:#48aff0; }
- .bp3-input-group.bp3-intent-success .bp3-input{
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- box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
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- box-shadow:0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
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- -webkit-box-shadow:inset 0 0 0 1px #0f9960;
- box-shadow:inset 0 0 0 1px #0f9960; }
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- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input-group.bp3-intent-success > .bp3-icon{
- color:#0d8050; }
- .bp3-dark .bp3-input-group.bp3-intent-success > .bp3-icon{
- color:#3dcc91; }
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- box-shadow:0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
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- box-shadow:inset 0 0 0 1px #d9822b; }
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- box-shadow:none; }
- .bp3-input-group.bp3-intent-warning > .bp3-icon{
- color:#bf7326; }
- .bp3-dark .bp3-input-group.bp3-intent-warning > .bp3-icon{
- color:#ffb366; }
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- .bp3-input-group.bp3-intent-danger .bp3-input:focus{
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- box-shadow:0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input-group.bp3-intent-danger .bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #db3737;
- box-shadow:inset 0 0 0 1px #db3737; }
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- box-shadow:none; }
- .bp3-input-group.bp3-intent-danger > .bp3-icon{
- color:#c23030; }
- .bp3-dark .bp3-input-group.bp3-intent-danger > .bp3-icon{
- color:#ff7373; }
-.bp3-input{
- -webkit-appearance:none;
- -moz-appearance:none;
- appearance:none;
- background:#ffffff;
- border:none;
- border-radius:3px;
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
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- color:#182026;
- font-size:14px;
- font-weight:400;
- height:30px;
- line-height:30px;
- outline:none;
- padding:0 10px;
- -webkit-transition:-webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:-webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9), -webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- vertical-align:middle; }
- .bp3-input::-webkit-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input::-moz-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input:-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input::-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input::placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input:focus, .bp3-input.bp3-active{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input[type="search"], .bp3-input.bp3-round{
- border-radius:30px;
- -webkit-box-sizing:border-box;
- box-sizing:border-box;
- padding-left:10px; }
- .bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.15);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.15); }
- .bp3-input:disabled, .bp3-input.bp3-disabled{
- background:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- resize:none; }
- .bp3-input.bp3-large{
- font-size:16px;
- height:40px;
- line-height:40px; }
- .bp3-input.bp3-large[type="search"], .bp3-input.bp3-large.bp3-round{
- padding:0 15px; }
- .bp3-input.bp3-small{
- font-size:12px;
- height:24px;
- line-height:24px;
- padding-left:8px;
- padding-right:8px; }
- .bp3-input.bp3-small[type="search"], .bp3-input.bp3-small.bp3-round{
- padding:0 12px; }
- .bp3-input.bp3-fill{
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto;
- width:100%; }
- .bp3-dark .bp3-input{
- background:rgba(16, 22, 26, 0.3);
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa; }
- .bp3-dark .bp3-input::-webkit-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-input::-moz-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-input:-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-input::-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-input::placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-input:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input:disabled, .bp3-dark .bp3-input.bp3-disabled{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-input.bp3-intent-primary{
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-primary:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-primary[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #137cbd;
- box-shadow:inset 0 0 0 1px #137cbd; }
- .bp3-input.bp3-intent-primary:disabled, .bp3-input.bp3-intent-primary.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-primary{
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-primary:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-primary[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #137cbd;
- box-shadow:inset 0 0 0 1px #137cbd; }
- .bp3-dark .bp3-input.bp3-intent-primary:disabled, .bp3-dark .bp3-input.bp3-intent-primary.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input.bp3-intent-success{
- -webkit-box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-success:focus{
- -webkit-box-shadow:0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-success[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #0f9960;
- box-shadow:inset 0 0 0 1px #0f9960; }
- .bp3-input.bp3-intent-success:disabled, .bp3-input.bp3-intent-success.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-success{
- -webkit-box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-success:focus{
- -webkit-box-shadow:0 0 0 1px #0f9960, 0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #0f9960, 0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-success[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #0f9960;
- box-shadow:inset 0 0 0 1px #0f9960; }
- .bp3-dark .bp3-input.bp3-intent-success:disabled, .bp3-dark .bp3-input.bp3-intent-success.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input.bp3-intent-warning{
- -webkit-box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-warning:focus{
- -webkit-box-shadow:0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-warning[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #d9822b;
- box-shadow:inset 0 0 0 1px #d9822b; }
- .bp3-input.bp3-intent-warning:disabled, .bp3-input.bp3-intent-warning.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-warning{
- -webkit-box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-warning:focus{
- -webkit-box-shadow:0 0 0 1px #d9822b, 0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #d9822b, 0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-warning[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #d9822b;
- box-shadow:inset 0 0 0 1px #d9822b; }
- .bp3-dark .bp3-input.bp3-intent-warning:disabled, .bp3-dark .bp3-input.bp3-intent-warning.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input.bp3-intent-danger{
- -webkit-box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-danger:focus{
- -webkit-box-shadow:0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-danger[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #db3737;
- box-shadow:inset 0 0 0 1px #db3737; }
- .bp3-input.bp3-intent-danger:disabled, .bp3-input.bp3-intent-danger.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-danger{
- -webkit-box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-danger:focus{
- -webkit-box-shadow:0 0 0 1px #db3737, 0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #db3737, 0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-danger[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #db3737;
- box-shadow:inset 0 0 0 1px #db3737; }
- .bp3-dark .bp3-input.bp3-intent-danger:disabled, .bp3-dark .bp3-input.bp3-intent-danger.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input::-ms-clear{
- display:none; }
-textarea.bp3-input{
- max-width:100%;
- padding:10px; }
- textarea.bp3-input, textarea.bp3-input.bp3-large, textarea.bp3-input.bp3-small{
- height:auto;
- line-height:inherit; }
- textarea.bp3-input.bp3-small{
- padding:8px; }
- .bp3-dark textarea.bp3-input{
- background:rgba(16, 22, 26, 0.3);
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa; }
- .bp3-dark textarea.bp3-input::-webkit-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input::-moz-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input:-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input::-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input::placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark textarea.bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark textarea.bp3-input:disabled, .bp3-dark textarea.bp3-input.bp3-disabled{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
-label.bp3-label{
- display:block;
- margin-bottom:15px;
- margin-top:0; }
- label.bp3-label .bp3-html-select,
- label.bp3-label .bp3-input,
- label.bp3-label .bp3-select,
- label.bp3-label .bp3-slider,
- label.bp3-label .bp3-popover-wrapper{
- display:block;
- margin-top:5px;
- text-transform:none; }
- label.bp3-label .bp3-button-group{
- margin-top:5px; }
- label.bp3-label .bp3-select select,
- label.bp3-label .bp3-html-select select{
- font-weight:400;
- vertical-align:top;
- width:100%; }
- label.bp3-label.bp3-disabled,
- label.bp3-label.bp3-disabled .bp3-text-muted{
- color:rgba(92, 112, 128, 0.6); }
- label.bp3-label.bp3-inline{
- line-height:30px; }
- label.bp3-label.bp3-inline .bp3-html-select,
- label.bp3-label.bp3-inline .bp3-input,
- label.bp3-label.bp3-inline .bp3-input-group,
- label.bp3-label.bp3-inline .bp3-select,
- label.bp3-label.bp3-inline .bp3-popover-wrapper{
- display:inline-block;
- margin:0 0 0 5px;
- vertical-align:top; }
- label.bp3-label.bp3-inline .bp3-button-group{
- margin:0 0 0 5px; }
- label.bp3-label.bp3-inline .bp3-input-group .bp3-input{
- margin-left:0; }
- label.bp3-label.bp3-inline.bp3-large{
- line-height:40px; }
- label.bp3-label:not(.bp3-inline) .bp3-popover-target{
- display:block; }
- .bp3-dark label.bp3-label{
- color:#f5f8fa; }
- .bp3-dark label.bp3-label.bp3-disabled,
- .bp3-dark label.bp3-label.bp3-disabled .bp3-text-muted{
- color:rgba(167, 182, 194, 0.6); }
-.bp3-numeric-input .bp3-button-group.bp3-vertical > .bp3-button{
- -webkit-box-flex:1;
- -ms-flex:1 1 14px;
- flex:1 1 14px;
- min-height:0;
- padding:0;
- width:30px; }
- .bp3-numeric-input .bp3-button-group.bp3-vertical > .bp3-button:first-child{
- border-radius:0 3px 0 0; }
- .bp3-numeric-input .bp3-button-group.bp3-vertical > .bp3-button:last-child{
- border-radius:0 0 3px 0; }
-
-.bp3-numeric-input .bp3-button-group.bp3-vertical:first-child > .bp3-button:first-child{
- border-radius:3px 0 0 0; }
-
-.bp3-numeric-input .bp3-button-group.bp3-vertical:first-child > .bp3-button:last-child{
- border-radius:0 0 0 3px; }
-
-.bp3-numeric-input.bp3-large .bp3-button-group.bp3-vertical > .bp3-button{
- width:40px; }
-
-form{
- display:block; }
-.bp3-html-select select,
-.bp3-select select{
- display:-webkit-inline-box;
- display:-ms-inline-flexbox;
- display:inline-flex;
- -webkit-box-orient:horizontal;
- -webkit-box-direction:normal;
- -ms-flex-direction:row;
- flex-direction:row;
- -webkit-box-align:center;
- -ms-flex-align:center;
- align-items:center;
- border:none;
- border-radius:3px;
- cursor:pointer;
- font-size:14px;
- -webkit-box-pack:center;
- -ms-flex-pack:center;
- justify-content:center;
- padding:5px 10px;
- text-align:left;
- vertical-align:middle;
- background-color:#f5f8fa;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.8)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.8), rgba(255, 255, 255, 0));
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- color:#182026;
- -moz-appearance:none;
- -webkit-appearance:none;
- border-radius:3px;
- height:30px;
- padding:0 25px 0 10px;
- width:100%; }
- .bp3-html-select select > *, .bp3-select select > *{
- -webkit-box-flex:0;
- -ms-flex-positive:0;
- flex-grow:0;
- -ms-flex-negative:0;
- flex-shrink:0; }
- .bp3-html-select select > .bp3-fill, .bp3-select select > .bp3-fill{
- -webkit-box-flex:1;
- -ms-flex-positive:1;
- flex-grow:1;
- -ms-flex-negative:1;
- flex-shrink:1; }
- .bp3-html-select select::before,
- .bp3-select select::before, .bp3-html-select select > *, .bp3-select select > *{
- margin-right:7px; }
- .bp3-html-select select:empty::before,
- .bp3-select select:empty::before,
- .bp3-html-select select > :last-child,
- .bp3-select select > :last-child{
- margin-right:0; }
- .bp3-html-select select:hover,
- .bp3-select select:hover{
- background-clip:padding-box;
- background-color:#ebf1f5;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
- .bp3-html-select select:active,
- .bp3-select select:active, .bp3-html-select select.bp3-active,
- .bp3-select select.bp3-active{
- background-color:#d8e1e8;
- background-image:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-html-select select:disabled,
- .bp3-select select:disabled, .bp3-html-select select.bp3-disabled,
- .bp3-select select.bp3-disabled{
- background-color:rgba(206, 217, 224, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- outline:none; }
- .bp3-html-select select:disabled.bp3-active,
- .bp3-select select:disabled.bp3-active, .bp3-html-select select:disabled.bp3-active:hover,
- .bp3-select select:disabled.bp3-active:hover, .bp3-html-select select.bp3-disabled.bp3-active,
- .bp3-select select.bp3-disabled.bp3-active, .bp3-html-select select.bp3-disabled.bp3-active:hover,
- .bp3-select select.bp3-disabled.bp3-active:hover{
- background:rgba(206, 217, 224, 0.7); }
-
-.bp3-html-select.bp3-minimal select,
-.bp3-select.bp3-minimal select{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-html-select.bp3-minimal select:hover,
- .bp3-select.bp3-minimal select:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-html-select.bp3-minimal select:active,
- .bp3-select.bp3-minimal select:active, .bp3-html-select.bp3-minimal select.bp3-active,
- .bp3-select.bp3-minimal select.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-html-select.bp3-minimal select:disabled,
- .bp3-select.bp3-minimal select:disabled, .bp3-html-select.bp3-minimal select:disabled:hover,
- .bp3-select.bp3-minimal select:disabled:hover, .bp3-html-select.bp3-minimal select.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-disabled, .bp3-html-select.bp3-minimal select.bp3-disabled:hover,
- .bp3-select.bp3-minimal select.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-html-select.bp3-minimal select:disabled.bp3-active,
- .bp3-select.bp3-minimal select:disabled.bp3-active, .bp3-html-select.bp3-minimal select:disabled:hover.bp3-active,
- .bp3-select.bp3-minimal select:disabled:hover.bp3-active, .bp3-html-select.bp3-minimal select.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-disabled:hover.bp3-active,
- .bp3-select.bp3-minimal select.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-html-select.bp3-minimal select, .bp3-html-select.bp3-minimal .bp3-dark select,
- .bp3-dark .bp3-select.bp3-minimal select, .bp3-select.bp3-minimal .bp3-dark select{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-html-select.bp3-minimal select:hover, .bp3-html-select.bp3-minimal .bp3-dark select:hover,
- .bp3-dark .bp3-select.bp3-minimal select:hover, .bp3-select.bp3-minimal .bp3-dark select:hover, .bp3-dark .bp3-html-select.bp3-minimal select:active, .bp3-html-select.bp3-minimal .bp3-dark select:active,
- .bp3-dark .bp3-select.bp3-minimal select:active, .bp3-select.bp3-minimal .bp3-dark select:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-html-select.bp3-minimal select:hover, .bp3-html-select.bp3-minimal .bp3-dark select:hover,
- .bp3-dark .bp3-select.bp3-minimal select:hover, .bp3-select.bp3-minimal .bp3-dark select:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-html-select.bp3-minimal select:active, .bp3-html-select.bp3-minimal .bp3-dark select:active,
- .bp3-dark .bp3-select.bp3-minimal select:active, .bp3-select.bp3-minimal .bp3-dark select:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-html-select.bp3-minimal select:disabled, .bp3-html-select.bp3-minimal .bp3-dark select:disabled,
- .bp3-dark .bp3-select.bp3-minimal select:disabled, .bp3-select.bp3-minimal .bp3-dark select:disabled, .bp3-dark .bp3-html-select.bp3-minimal select:disabled:hover, .bp3-html-select.bp3-minimal .bp3-dark select:disabled:hover,
- .bp3-dark .bp3-select.bp3-minimal select:disabled:hover, .bp3-select.bp3-minimal .bp3-dark select:disabled:hover, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled:hover, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled:hover,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled:hover, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-html-select.bp3-minimal select:disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select:disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select:disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select:disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select:disabled:hover.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select:disabled:hover.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select:disabled:hover.bp3-active, .bp3-select.bp3-minimal .bp3-dark select:disabled:hover.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled:hover.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled:hover.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled:hover.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary,
- .bp3-select.bp3-minimal select.bp3-intent-primary{
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:hover,
- .bp3-select.bp3-minimal select.bp3-intent-primary:hover, .bp3-html-select.bp3-minimal select.bp3-intent-primary:active,
- .bp3-select.bp3-minimal select.bp3-intent-primary:active, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:hover,
- .bp3-select.bp3-minimal select.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:active,
- .bp3-select.bp3-minimal select.bp3-intent-primary:active, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled,
- .bp3-select.bp3-minimal select.bp3-intent-primary:disabled, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head, .bp3-select.bp3-minimal select.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:hover, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:hover,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:hover, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-success,
- .bp3-select.bp3-minimal select.bp3-intent-success{
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:hover,
- .bp3-select.bp3-minimal select.bp3-intent-success:hover, .bp3-html-select.bp3-minimal select.bp3-intent-success:active,
- .bp3-select.bp3-minimal select.bp3-intent-success:active, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:hover,
- .bp3-select.bp3-minimal select.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:active,
- .bp3-select.bp3-minimal select.bp3-intent-success:active, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled,
- .bp3-select.bp3-minimal select.bp3-intent-success:disabled, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success:disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-success .bp3-button-spinner .bp3-spinner-head, .bp3-select.bp3-minimal select.bp3-intent-success .bp3-button-spinner .bp3-spinner-head{
- stroke:#0d8050; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success{
- color:#3dcc91; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:hover, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:hover,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success:hover, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.2);
- color:#3dcc91; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success:active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#3dcc91; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success:disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success:disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(61, 204, 145, 0.5); }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success:disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success:disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success.bp3-disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning,
- .bp3-select.bp3-minimal select.bp3-intent-warning{
- color:#bf7326; }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning:hover,
- .bp3-select.bp3-minimal select.bp3-intent-warning:hover, .bp3-html-select.bp3-minimal select.bp3-intent-warning:active,
- .bp3-select.bp3-minimal select.bp3-intent-warning:active, .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#bf7326; }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning:hover,
- .bp3-select.bp3-minimal select.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning:active,
- .bp3-select.bp3-minimal select.bp3-intent-warning:active, .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#bf7326; }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning:disabled,
- .bp3-select.bp3-minimal select.bp3-intent-warning:disabled, .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(191, 115, 38, 0.5); }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning:disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-warning:disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head, .bp3-select.bp3-minimal select.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head{
- stroke:#bf7326; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning{
- color:#ffb366; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning:hover, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning:hover,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning:hover, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.2);
- color:#ffb366; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning:active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning:active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning:active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#ffb366; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning:disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning:disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning:disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning:disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(255, 179, 102, 0.5); }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning:disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning:disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning:disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning:disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-danger,
- .bp3-select.bp3-minimal select.bp3-intent-danger{
- color:#c23030; }
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-.bp3-select select:disabled{
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- .bp3-select .bp3-icon{
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- .bp3-select .bp3-icon:hover{
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-table.bp3-html-table.bp3-html-table-condensed th,
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- border-color:rgba(92, 112, 128, 0.2); } }
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- background:rgba(206, 217, 224, 0.2);
- border-color:rgba(206, 217, 224, 0.2); }
- to{
- background:rgba(92, 112, 128, 0.2);
- border-color:rgba(92, 112, 128, 0.2); } }
-.bp3-skeleton{
- -webkit-animation:1000ms linear infinite alternate skeleton-glow;
- animation:1000ms linear infinite alternate skeleton-glow;
- background:rgba(206, 217, 224, 0.2);
- background-clip:padding-box !important;
- border-color:rgba(206, 217, 224, 0.2) !important;
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- .bp3-skeleton::before, .bp3-skeleton::after,
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- visibility:hidden !important; }
-.bp3-slider{
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- .bp3-slider.bp3-slider-unlabeled{
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-.bp3-slider-track,
-.bp3-slider-progress{
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- right:0;
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-.bp3-slider-track{
- border-radius:3px;
- overflow:hidden; }
-
-.bp3-slider-progress{
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- .bp3-dark .bp3-slider-progress{
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- background-color:#137cbd; }
- .bp3-slider-progress.bp3-intent-success{
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- cursor:pointer;
- height:16px;
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- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
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- -webkit-box-shadow:none;
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- stroke:#8a9ba8; }
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- background-color:#394b59; }
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- border-color:#5c7080;
- -webkit-box-shadow:none;
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- background:#e1e8ed;
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- color:#394b59; }
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- .bp3-slider-handle.bp3-start, .bp3-slider-handle.bp3-end{
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-
-.bp3-slider-label{
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- transform:translate(-50%, 20px);
- display:inline-block;
- font-size:12px;
- line-height:1;
- padding:2px 5px;
- position:absolute;
- vertical-align:top; }
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-.bp3-slider.bp3-vertical{
- height:150px;
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- transform:translate(20px); }
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- border-bottom-left-radius:0;
- border-bottom-right-radius:0;
- border-top-left-radius:3px;
- margin-bottom:8px; }
-
-@-webkit-keyframes pt-spinner-animation{
- from{
- -webkit-transform:rotate(0deg);
- transform:rotate(0deg); }
- to{
- -webkit-transform:rotate(360deg);
- transform:rotate(360deg); } }
-
-@keyframes pt-spinner-animation{
- from{
- -webkit-transform:rotate(0deg);
- transform:rotate(0deg); }
- to{
- -webkit-transform:rotate(360deg);
- transform:rotate(360deg); } }
-
-.bp3-spinner{
- -webkit-box-align:center;
- -ms-flex-align:center;
- align-items:center;
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- -webkit-box-pack:center;
- -ms-flex-pack:center;
- justify-content:center;
- overflow:visible;
- vertical-align:middle; }
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- display:block; }
- .bp3-spinner path{
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- stroke-linecap:round;
- -webkit-transform-origin:center;
- transform-origin:center;
- -webkit-transition:stroke-dashoffset 200ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:stroke-dashoffset 200ms cubic-bezier(0.4, 1, 0.75, 0.9); }
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-.bp3-spinner-animation{
- -webkit-animation:pt-spinner-animation 500ms linear infinite;
- animation:pt-spinner-animation 500ms linear infinite; }
- .bp3-no-spin > .bp3-spinner-animation{
- -webkit-animation:none;
- animation:none; }
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-.bp3-dark .bp3-spinner .bp3-spinner-head{
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-.bp3-dark .bp3-spinner .bp3-spinner-track{
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-.bp3-spinner.bp3-intent-primary .bp3-spinner-head{
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-.bp3-spinner.bp3-intent-success .bp3-spinner-head{
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-.bp3-spinner.bp3-intent-warning .bp3-spinner-head{
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-.bp3-spinner.bp3-intent-danger .bp3-spinner-head{
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- align-items:flex-start;
- -webkit-box-orient:vertical;
- -webkit-box-direction:normal;
- -ms-flex-direction:column;
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-.bp3-tab-list{
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- align-items:flex-end;
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- -ms-flex:0 0 auto;
- flex:0 0 auto;
- list-style:none;
- margin:0;
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- .bp3-tab-list > *:not(:last-child){
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-.bp3-tab{
- overflow:hidden;
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- white-space:nowrap;
- word-wrap:normal;
- color:#182026;
- cursor:pointer;
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- flex:0 0 auto;
- font-size:14px;
- line-height:30px;
- max-width:100%;
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- box-shadow:none !important; }
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- .bp3-tab:focus{
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-.bp3-tab-panel{
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-.bp3-tab-indicator-wrapper{
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- transition:height, transform, width, -webkit-transform;
- -webkit-transition-duration:200ms;
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-.bp3-dark .bp3-tab{
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- box-shadow:inset 0 -3px 0 #48aff0; }
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-.bp3-dark .bp3-tab-indicator{
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-.bp3-flex-expander{
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-.bp3-tag{
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- background-color:#5c7080;
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- .bp3-tag.bp3-large > *,
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- background-color:rgba(19, 124, 189, 0.85); }
- .bp3-tag.bp3-intent-primary.bp3-interactive.bp3-active, .bp3-tag.bp3-intent-primary.bp3-interactive:active{
- background-color:rgba(19, 124, 189, 0.7); }
- .bp3-tag.bp3-intent-success{
- background:#0f9960;
- color:#ffffff; }
- .bp3-tag.bp3-intent-success.bp3-interactive{
- cursor:pointer; }
- .bp3-tag.bp3-intent-success.bp3-interactive:hover{
- background-color:rgba(15, 153, 96, 0.85); }
- .bp3-tag.bp3-intent-success.bp3-interactive.bp3-active, .bp3-tag.bp3-intent-success.bp3-interactive:active{
- background-color:rgba(15, 153, 96, 0.7); }
- .bp3-tag.bp3-intent-warning{
- background:#d9822b;
- color:#ffffff; }
- .bp3-tag.bp3-intent-warning.bp3-interactive{
- cursor:pointer; }
- .bp3-tag.bp3-intent-warning.bp3-interactive:hover{
- background-color:rgba(217, 130, 43, 0.85); }
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- background-color:rgba(217, 130, 43, 0.7); }
- .bp3-tag.bp3-intent-danger{
- background:#db3737;
- color:#ffffff; }
- .bp3-tag.bp3-intent-danger.bp3-interactive{
- cursor:pointer; }
- .bp3-tag.bp3-intent-danger.bp3-interactive:hover{
- background-color:rgba(219, 55, 55, 0.85); }
- .bp3-tag.bp3-intent-danger.bp3-interactive.bp3-active, .bp3-tag.bp3-intent-danger.bp3-interactive:active{
- background-color:rgba(219, 55, 55, 0.7); }
- .bp3-tag.bp3-fill{
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- width:100%; }
- .bp3-tag.bp3-minimal > .bp3-icon, .bp3-tag.bp3-minimal .bp3-icon-standard, .bp3-tag.bp3-minimal .bp3-icon-large{
- fill:#5c7080; }
- .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]){
- background-color:rgba(138, 155, 168, 0.2);
- color:#182026; }
- .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive{
- cursor:pointer; }
- .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive:hover{
- background-color:rgba(92, 112, 128, 0.3); }
- .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive.bp3-active, .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive:active{
- background-color:rgba(92, 112, 128, 0.4); }
- .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]){
- color:#f5f8fa; }
- .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive{
- cursor:pointer; }
- .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive:hover{
- background-color:rgba(191, 204, 214, 0.3); }
- .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive.bp3-active, .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive:active{
- background-color:rgba(191, 204, 214, 0.4); }
- .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]) > .bp3-icon, .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]) .bp3-icon-standard, .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]) .bp3-icon-large{
- fill:#a7b6c2; }
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- background-color:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-tag.bp3-minimal.bp3-intent-primary.bp3-interactive{
- cursor:pointer; }
- .bp3-tag.bp3-minimal.bp3-intent-primary.bp3-interactive:hover{
- background-color:rgba(19, 124, 189, 0.25); }
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- background-color:rgba(19, 124, 189, 0.35); }
- .bp3-tag.bp3-minimal.bp3-intent-primary > .bp3-icon, .bp3-tag.bp3-minimal.bp3-intent-primary .bp3-icon-standard, .bp3-tag.bp3-minimal.bp3-intent-primary .bp3-icon-large{
- fill:#137cbd; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-primary{
- background-color:rgba(19, 124, 189, 0.25);
- color:#48aff0; }
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- background-color:rgba(19, 124, 189, 0.35); }
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- background-color:rgba(19, 124, 189, 0.45); }
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- background-color:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
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- cursor:pointer; }
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- background-color:rgba(15, 153, 96, 0.25); }
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- background-color:rgba(15, 153, 96, 0.35); }
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- fill:#0f9960; }
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- background-color:rgba(15, 153, 96, 0.25);
- color:#3dcc91; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-success.bp3-interactive{
- cursor:pointer; }
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- background-color:rgba(15, 153, 96, 0.35); }
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- background-color:rgba(15, 153, 96, 0.45); }
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- background-color:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
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- background-color:rgba(217, 130, 43, 0.25); }
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- background-color:rgba(217, 130, 43, 0.35); }
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- background-color:rgba(217, 130, 43, 0.45); }
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- color:#c23030; }
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- background-color:rgba(219, 55, 55, 0.25); }
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- background-color:rgba(219, 55, 55, 0.35); }
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- fill:#db3737; }
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- background-color:rgba(219, 55, 55, 0.25);
- color:#ff7373; }
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- cursor:pointer; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-danger.bp3-interactive:hover{
- background-color:rgba(219, 55, 55, 0.35); }
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- background-color:rgba(219, 55, 55, 0.45); }
-
-.bp3-tag-remove{
- background:none;
- border:none;
- color:inherit;
- cursor:pointer;
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- margin-bottom:-2px;
- margin-right:-6px !important;
- margin-top:-2px;
- opacity:0.5;
- padding:2px;
- padding-left:0; }
- .bp3-tag-remove:hover{
- background:none;
- opacity:0.8;
- text-decoration:none; }
- .bp3-tag-remove:active{
- opacity:1; }
- .bp3-tag-remove:empty::before{
- font-family:"Icons16", sans-serif;
- font-size:16px;
- font-style:normal;
- font-weight:400;
- line-height:1;
- -moz-osx-font-smoothing:grayscale;
- -webkit-font-smoothing:antialiased;
- content:""; }
- .bp3-large .bp3-tag-remove{
- margin-right:-10px !important;
- padding:0 5px 0 0; }
- .bp3-large .bp3-tag-remove:empty::before{
- font-family:"Icons20", sans-serif;
- font-size:20px;
- font-style:normal;
- font-weight:400;
- line-height:1; }
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- display:-ms-flexbox;
- display:flex;
- -webkit-box-orient:horizontal;
- -webkit-box-direction:normal;
- -ms-flex-direction:row;
- flex-direction:row;
- -webkit-box-align:start;
- -ms-flex-align:start;
- align-items:flex-start;
- cursor:text;
- height:auto;
- line-height:inherit;
- min-height:30px;
- padding-left:5px;
- padding-right:0; }
- .bp3-tag-input > *{
- -webkit-box-flex:0;
- -ms-flex-positive:0;
- flex-grow:0;
- -ms-flex-negative:0;
- flex-shrink:0; }
- .bp3-tag-input > .bp3-tag-input-values{
- -webkit-box-flex:1;
- -ms-flex-positive:1;
- flex-grow:1;
- -ms-flex-negative:1;
- flex-shrink:1; }
- .bp3-tag-input .bp3-tag-input-icon{
- color:#5c7080;
- margin-left:2px;
- margin-right:7px;
- margin-top:7px; }
- .bp3-tag-input .bp3-tag-input-values{
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- -webkit-box-orient:horizontal;
- -webkit-box-direction:normal;
- -ms-flex-direction:row;
- flex-direction:row;
- -webkit-box-align:center;
- -ms-flex-align:center;
- align-items:center;
- -ms-flex-item-align:stretch;
- align-self:stretch;
- -ms-flex-wrap:wrap;
- flex-wrap:wrap;
- margin-right:7px;
- margin-top:5px;
- min-width:0; }
- .bp3-tag-input .bp3-tag-input-values > *{
- -webkit-box-flex:0;
- -ms-flex-positive:0;
- flex-grow:0;
- -ms-flex-negative:0;
- flex-shrink:0; }
- .bp3-tag-input .bp3-tag-input-values > .bp3-fill{
- -webkit-box-flex:1;
- -ms-flex-positive:1;
- flex-grow:1;
- -ms-flex-negative:1;
- flex-shrink:1; }
- .bp3-tag-input .bp3-tag-input-values::before,
- .bp3-tag-input .bp3-tag-input-values > *{
- margin-right:5px; }
- .bp3-tag-input .bp3-tag-input-values:empty::before,
- .bp3-tag-input .bp3-tag-input-values > :last-child{
- margin-right:0; }
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- padding-left:5px; }
- .bp3-tag-input .bp3-tag-input-values > *{
- margin-bottom:5px; }
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- overflow-wrap:break-word; }
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- outline:rgba(19, 124, 189, 0.6) auto 2px;
- outline-offset:0;
- -moz-outline-radius:6px; }
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- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto;
- line-height:20px;
- width:80px; }
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- cursor:not-allowed; }
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- .bp3-tag-input .bp3-spinner{
- margin:3px;
- margin-left:0; }
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- min-height:24px;
- min-width:24px;
- padding:0 7px; }
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- height:auto;
- min-height:40px; }
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- .bp3-tag-input.bp3-large > *{
- margin-right:10px; }
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- .bp3-tag-input.bp3-large > :last-child{
- margin-right:0; }
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- margin-left:5px;
- margin-top:10px; }
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- min-height:30px;
- min-width:30px;
- padding:5px 10px;
- margin:5px;
- margin-left:0; }
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- margin-left:0; }
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- background-color:#ffffff;
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
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- box-shadow:0 0 0 1px #0d8050, 0 0 0 3px rgba(13, 128, 80, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
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- -webkit-box-shadow:0 0 0 1px #c23030, 0 0 0 3px rgba(194, 48, 48, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #c23030, 0 0 0 3px rgba(194, 48, 48, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
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- color:#a7b6c2; }
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- color:#f5f8fa; }
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- color:rgba(167, 182, 194, 0.6); }
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- color:rgba(167, 182, 194, 0.6); }
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- color:rgba(167, 182, 194, 0.6); }
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- .bp3-dark .bp3-tag-input.bp3-active, .bp3-tag-input.bp3-dark.bp3-active{
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- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
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- .bp3-dark .bp3-tag-input.bp3-active.bp3-intent-primary, .bp3-tag-input.bp3-dark.bp3-active.bp3-intent-primary{
- -webkit-box-shadow:0 0 0 1px #106ba3, 0 0 0 3px rgba(16, 107, 163, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
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- .bp3-dark .bp3-tag-input.bp3-active.bp3-intent-success, .bp3-tag-input.bp3-dark.bp3-active.bp3-intent-success{
- -webkit-box-shadow:0 0 0 1px #0d8050, 0 0 0 3px rgba(13, 128, 80, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
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- .bp3-dark .bp3-tag-input.bp3-active.bp3-intent-danger, .bp3-tag-input.bp3-dark.bp3-active.bp3-intent-danger{
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-
-.bp3-input-ghost{
- background:none;
- border:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- padding:0; }
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- opacity:1; }
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- opacity:1; }
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-.bp3-toast{
- -webkit-box-align:start;
- -ms-flex-align:start;
- align-items:flex-start;
- background-color:#ffffff;
- border-radius:3px;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 2px 4px rgba(16, 22, 26, 0.2), 0 8px 24px rgba(16, 22, 26, 0.2);
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- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- margin:20px 0 0;
- max-width:500px;
- min-width:300px;
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-.bp3-tree-node.bp3-disabled .bp3-tree-node-content{
- background-color:inherit;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
-
-.bp3-tree-node.bp3-disabled .bp3-tree-node-caret,
-.bp3-tree-node.bp3-disabled .bp3-tree-node-icon{
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
-
-.bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content{
- background-color:#137cbd; }
- .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content,
- .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content .bp3-icon, .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content .bp3-icon-standard, .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content .bp3-icon-large{
- color:#ffffff; }
- .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content .bp3-tree-node-caret::before{
- color:rgba(255, 255, 255, 0.7); }
- .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content .bp3-tree-node-caret:hover::before{
- color:#ffffff; }
-
-.bp3-dark .bp3-tree-node-content:hover{
- background-color:rgba(92, 112, 128, 0.3); }
-
-.bp3-dark .bp3-tree .bp3-icon, .bp3-dark .bp3-tree .bp3-icon-standard, .bp3-dark .bp3-tree .bp3-icon-large{
- color:#a7b6c2; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-primary, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-primary, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-primary{
- color:#137cbd; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-success, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-success, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-success{
- color:#0f9960; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-warning, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-warning, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-warning{
- color:#d9822b; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-danger, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-danger, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-danger{
- color:#db3737; }
-
-.bp3-dark .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content{
- background-color:#137cbd; }
-.bp3-omnibar{
- -webkit-filter:blur(0);
- filter:blur(0);
- opacity:1;
- background-color:#ffffff;
- border-radius:3px;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 4px 8px rgba(16, 22, 26, 0.2), 0 18px 46px 6px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 4px 8px rgba(16, 22, 26, 0.2), 0 18px 46px 6px rgba(16, 22, 26, 0.2);
- left:calc(50% - 250px);
- top:20vh;
- width:500px;
- z-index:21; }
- .bp3-omnibar.bp3-overlay-enter, .bp3-omnibar.bp3-overlay-appear{
- -webkit-filter:blur(20px);
- filter:blur(20px);
- opacity:0.2; }
- .bp3-omnibar.bp3-overlay-enter-active, .bp3-omnibar.bp3-overlay-appear-active{
- -webkit-filter:blur(0);
- filter:blur(0);
- opacity:1;
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:200ms;
- transition-duration:200ms;
- -webkit-transition-property:opacity, -webkit-filter;
- transition-property:opacity, -webkit-filter;
- transition-property:filter, opacity;
- transition-property:filter, opacity, -webkit-filter;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-omnibar.bp3-overlay-exit{
- -webkit-filter:blur(0);
- filter:blur(0);
- opacity:1; }
- .bp3-omnibar.bp3-overlay-exit-active{
- -webkit-filter:blur(20px);
- filter:blur(20px);
- opacity:0.2;
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:200ms;
- transition-duration:200ms;
- -webkit-transition-property:opacity, -webkit-filter;
- transition-property:opacity, -webkit-filter;
- transition-property:filter, opacity;
- transition-property:filter, opacity, -webkit-filter;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-omnibar .bp3-input{
- background-color:transparent;
- border-radius:0; }
- .bp3-omnibar .bp3-input, .bp3-omnibar .bp3-input:focus{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-omnibar .bp3-menu{
- background-color:transparent;
- border-radius:0;
- -webkit-box-shadow:inset 0 1px 0 rgba(16, 22, 26, 0.15);
- box-shadow:inset 0 1px 0 rgba(16, 22, 26, 0.15);
- max-height:calc(60vh - 40px);
- overflow:auto; }
- .bp3-omnibar .bp3-menu:empty{
- display:none; }
- .bp3-dark .bp3-omnibar, .bp3-omnibar.bp3-dark{
- background-color:#30404d;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 4px 8px rgba(16, 22, 26, 0.4), 0 18px 46px 6px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 4px 8px rgba(16, 22, 26, 0.4), 0 18px 46px 6px rgba(16, 22, 26, 0.4); }
-
-.bp3-omnibar-overlay .bp3-overlay-backdrop{
- background-color:rgba(16, 22, 26, 0.2); }
-
-.bp3-select-popover .bp3-popover-content{
- padding:5px; }
-
-.bp3-select-popover .bp3-input-group{
- margin-bottom:0; }
-
-.bp3-select-popover .bp3-menu{
- max-height:300px;
- max-width:400px;
- overflow:auto;
- padding:0; }
- .bp3-select-popover .bp3-menu:not(:first-child){
- padding-top:5px; }
-
-.bp3-multi-select{
- min-width:150px; }
-
-.bp3-multi-select-popover .bp3-menu{
- max-height:300px;
- max-width:400px;
- overflow:auto; }
-
-.bp3-select-popover .bp3-popover-content{
- padding:5px; }
-
-.bp3-select-popover .bp3-input-group{
- margin-bottom:0; }
-
-.bp3-select-popover .bp3-menu{
- max-height:300px;
- max-width:400px;
- overflow:auto;
- padding:0; }
- .bp3-select-popover .bp3-menu:not(:first-child){
- padding-top:5px; }
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/* This file was auto-generated by ensureUiComponents() in @jupyterlab/buildutils */
-
-/**
- * (DEPRECATED) Support for consuming icons as CSS background images
- */
-
-/* Icons urls */
-
-:root {
- --jp-icon-add: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTE5IDEzaC02djZoLTJ2LTZINXYtMmg2VjVoMnY2aDZ2MnoiLz4KICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-bug: url(data:image/svg+xml;base64,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);
- --jp-icon-build: url(data:image/svg+xml;base64,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);
- --jp-icon-caret-down-empty-thin: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDIwIDIwIj4KCTxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSIgc2hhcGUtcmVuZGVyaW5nPSJnZW9tZXRyaWNQcmVjaXNpb24iPgoJCTxwb2x5Z29uIGNsYXNzPSJzdDEiIHBvaW50cz0iOS45LDEzLjYgMy42LDcuNCA0LjQsNi42IDkuOSwxMi4yIDE1LjQsNi43IDE2LjEsNy40ICIvPgoJPC9nPgo8L3N2Zz4K);
- --jp-icon-caret-down-empty: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiIHNoYXBlLXJlbmRlcmluZz0iZ2VvbWV0cmljUHJlY2lzaW9uIj4KICAgIDxwYXRoIGQ9Ik01LjIsNS45TDksOS43bDMuOC0zLjhsMS4yLDEuMmwtNC45LDVsLTQuOS01TDUuMiw1Ljl6Ii8+CiAgPC9nPgo8L3N2Zz4K);
- --jp-icon-caret-down: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiIHNoYXBlLXJlbmRlcmluZz0iZ2VvbWV0cmljUHJlY2lzaW9uIj4KICAgIDxwYXRoIGQ9Ik01LjIsNy41TDksMTEuMmwzLjgtMy44SDUuMnoiLz4KICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-caret-left: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KCTxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSIgc2hhcGUtcmVuZGVyaW5nPSJnZW9tZXRyaWNQcmVjaXNpb24iPgoJCTxwYXRoIGQ9Ik0xMC44LDEyLjhMNy4xLDlsMy44LTMuOGwwLDcuNkgxMC44eiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-caret-right: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiIHNoYXBlLXJlbmRlcmluZz0iZ2VvbWV0cmljUHJlY2lzaW9uIj4KICAgIDxwYXRoIGQ9Ik03LjIsNS4yTDEwLjksOWwtMy44LDMuOFY1LjJINy4yeiIvPgogIDwvZz4KPC9zdmc+Cg==);
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- --jp-icon-caret-up: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KCTxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSIgc2hhcGUtcmVuZGVyaW5nPSJnZW9tZXRyaWNQcmVjaXNpb24iPgoJCTxwYXRoIGQ9Ik01LjIsMTAuNUw5LDYuOGwzLjgsMy44SDUuMnoiLz4KICA8L2c+Cjwvc3ZnPgo=);
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- --jp-icon-jupyterlab-wordmark: 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- --jp-icon-keyboard: url(data:image/svg+xml;base64,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);
- --jp-icon-launcher: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8cGF0aCBjbGFzcz0ianAtaWNvbjMganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNjE2MTYxIiBkPSJNMTkgMTlINVY1aDdWM0g1YTIgMiAwIDAwLTIgMnYxNGEyIDIgMCAwMDIgMmgxNGMxLjEgMCAyLS45IDItMnYtN2gtMnY3ek0xNCAzdjJoMy41OWwtOS44MyA5LjgzIDEuNDEgMS40MUwxOSA2LjQxVjEwaDJWM2gtN3oiLz4KPC9zdmc+Cg==);
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- --jp-icon-link: url(data:image/svg+xml;base64,PHN2ZyB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIxNiIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTMuOSAxMmMwLTEuNzEgMS4zOS0zLjEgMy4xLTMuMWg0VjdIN2MtMi43NiAwLTUgMi4yNC01IDVzMi4yNCA1IDUgNWg0di0xLjlIN2MtMS43MSAwLTMuMS0xLjM5LTMuMS0zLjF6TTggMTNoOHYtMkg4djJ6bTktNmgtNHYxLjloNGMxLjcxIDAgMy4xIDEuMzkgMy4xIDMuMXMtMS4zOSAzLjEtMy4xIDMuMWgtNFYxN2g0YzIuNzYgMCA1LTIuMjQgNS01cy0yLjI0LTUtNS01eiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-list: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICAgIDxwYXRoIGNsYXNzPSJqcC1pY29uMiBqcC1pY29uLXNlbGVjdGFibGUiIGZpbGw9IiM2MTYxNjEiIGQ9Ik0xOSA1djE0SDVWNWgxNG0xLjEtMkgzLjljLS41IDAtLjkuNC0uOS45djE2LjJjMCAuNC40LjkuOS45aDE2LjJjLjQgMCAuOS0uNS45LS45VjMuOWMwLS41LS41LS45LS45LS45ek0xMSA3aDZ2MmgtNlY3em0wIDRoNnYyaC02di0yem0wIDRoNnYyaC02ek03IDdoMnYySDd6bTAgNGgydjJIN3ptMCA0aDJ2Mkg3eiIvPgo8L3N2Zz4=);
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- --jp-icon-pdf: url(data:image/svg+xml;base64,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);
- --jp-icon-python: url(data:image/svg+xml;base64,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);
- --jp-icon-r-kernel: url(data:image/svg+xml;base64,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);
- --jp-icon-react: url(data:image/svg+xml;base64,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);
- --jp-icon-redo: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIGhlaWdodD0iMjQiIHZpZXdCb3g9IjAgMCAyNCAyNCIgd2lkdGg9IjE2Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgICA8cGF0aCBkPSJNMCAwaDI0djI0SDB6IiBmaWxsPSJub25lIi8+PHBhdGggZD0iTTE4LjQgMTAuNkMxNi41NSA4Ljk5IDE0LjE1IDggMTEuNSA4Yy00LjY1IDAtOC41OCAzLjAzLTkuOTYgNy4yMkwzLjkgMTZjMS4wNS0zLjE5IDQuMDUtNS41IDcuNi01LjUgMS45NSAwIDMuNzMuNzIgNS4xMiAxLjg4TDEzIDE2aDlWN2wtMy42IDMuNnoiLz4KICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-refresh: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTkgMTMuNWMtMi40OSAwLTQuNS0yLjAxLTQuNS00LjVTNi41MSA0LjUgOSA0LjVjMS4yNCAwIDIuMzYuNTIgMy4xNyAxLjMzTDEwIDhoNVYzbC0xLjc2IDEuNzZDMTIuMTUgMy42OCAxMC42NiAzIDkgMyA1LjY5IDMgMy4wMSA1LjY5IDMuMDEgOVM1LjY5IDE1IDkgMTVjMi45NyAwIDUuNDMtMi4xNiA1LjktNWgtMS41MmMtLjQ2IDItMi4yNCAzLjUtNC4zOCAzLjV6Ii8+CiAgICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-regex: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDIwIDIwIj4KICA8ZyBjbGFzcz0ianAtaWNvbjIiIGZpbGw9IiM0MTQxNDEiPgogICAgPHJlY3QgeD0iMiIgeT0iMiIgd2lkdGg9IjE2IiBoZWlnaHQ9IjE2Ii8+CiAgPC9nPgoKICA8ZyBjbGFzcz0ianAtaWNvbi1hY2NlbnQyIiBmaWxsPSIjRkZGIj4KICAgIDxjaXJjbGUgY2xhc3M9InN0MiIgY3g9IjUuNSIgY3k9IjE0LjUiIHI9IjEuNSIvPgogICAgPHJlY3QgeD0iMTIiIHk9IjQiIGNsYXNzPSJzdDIiIHdpZHRoPSIxIiBoZWlnaHQ9IjgiLz4KICAgIDxyZWN0IHg9IjguNSIgeT0iNy41IiB0cmFuc2Zvcm09Im1hdHJpeCgwLjg2NiAtMC41IDAuNSAwLjg2NiAtMi4zMjU1IDcuMzIxOSkiIGNsYXNzPSJzdDIiIHdpZHRoPSI4IiBoZWlnaHQ9IjEiLz4KICAgIDxyZWN0IHg9IjEyIiB5PSI0IiB0cmFuc2Zvcm09Im1hdHJpeCgwLjUgLTAuODY2IDAuODY2IDAuNSAtMC42Nzc5IDE0LjgyNTIpIiBjbGFzcz0ic3QyIiB3aWR0aD0iMSIgaGVpZ2h0PSI4Ii8+CiAgPC9nPgo8L3N2Zz4K);
- --jp-icon-run: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTggNXYxNGwxMS03eiIvPgogICAgPC9nPgo8L3N2Zz4K);
- --jp-icon-running: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDUxMiA1MTIiPgogIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICA8cGF0aCBkPSJNMjU2IDhDMTE5IDggOCAxMTkgOCAyNTZzMTExIDI0OCAyNDggMjQ4IDI0OC0xMTEgMjQ4LTI0OFMzOTMgOCAyNTYgOHptOTYgMzI4YzAgOC44LTcuMiAxNi0xNiAxNkgxNzZjLTguOCAwLTE2LTcuMi0xNi0xNlYxNzZjMC04LjggNy4yLTE2IDE2LTE2aDE2MGM4LjggMCAxNiA3LjIgMTYgMTZ2MTYweiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-save: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTE3IDNINWMtMS4xMSAwLTIgLjktMiAydjE0YzAgMS4xLjg5IDIgMiAyaDE0YzEuMSAwIDItLjkgMi0yVjdsLTQtNHptLTUgMTZjLTEuNjYgMC0zLTEuMzQtMy0zczEuMzQtMyAzLTMgMyAxLjM0IDMgMy0xLjM0IDMtMyAzem0zLTEwSDVWNWgxMHY0eiIvPgogICAgPC9nPgo8L3N2Zz4K);
- --jp-icon-search: url(data:image/svg+xml;base64,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);
- --jp-icon-settings: url(data:image/svg+xml;base64,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);
- --jp-icon-spreadsheet: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDIyIDIyIj4KICA8cGF0aCBjbGFzcz0ianAtaWNvbi1jb250cmFzdDEganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNENBRjUwIiBkPSJNMi4yIDIuMnYxNy42aDE3LjZWMi4ySDIuMnptMTUuNCA3LjdoLTUuNVY0LjRoNS41djUuNXpNOS45IDQuNHY1LjVINC40VjQuNGg1LjV6bS01LjUgNy43aDUuNXY1LjVINC40di01LjV6bTcuNyA1LjV2LTUuNWg1LjV2NS41aC01LjV6Ii8+Cjwvc3ZnPgo=);
- --jp-icon-stop: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTAgMGgyNHYyNEgweiIgZmlsbD0ibm9uZSIvPgogICAgICAgIDxwYXRoIGQ9Ik02IDZoMTJ2MTJINnoiLz4KICAgIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-tab: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTIxIDNIM2MtMS4xIDAtMiAuOS0yIDJ2MTRjMCAxLjEuOSAyIDIgMmgxOGMxLjEgMCAyLS45IDItMlY1YzAtMS4xLS45LTItMi0yem0wIDE2SDNWNWgxMHY0aDh2MTB6Ii8+CiAgPC9nPgo8L3N2Zz4K);
- --jp-icon-table-rows: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTAgMGgyNHYyNEgweiIgZmlsbD0ibm9uZSIvPgogICAgICAgIDxwYXRoIGQ9Ik0yMSw4SDNWNGgxOFY4eiBNMjEsMTBIM3Y0aDE4VjEweiBNMjEsMTZIM3Y0aDE4VjE2eiIvPgogICAgPC9nPgo8L3N2Zz4=);
- --jp-icon-tag: url(data:image/svg+xml;base64,PHN2ZyB3aWR0aD0iMjgiIGhlaWdodD0iMjgiIHZpZXdCb3g9IjAgMCA0MyAyOCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KCTxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CgkJPHBhdGggZD0iTTI4LjgzMzIgMTIuMzM0TDMyLjk5OTggMTYuNTAwN0wzNy4xNjY1IDEyLjMzNEgyOC44MzMyWiIvPgoJCTxwYXRoIGQ9Ik0xNi4yMDk1IDIxLjYxMDRDMTUuNjg3MyAyMi4xMjk5IDE0Ljg0NDMgMjIuMTI5OSAxNC4zMjQ4IDIxLjYxMDRMNi45ODI5IDE0LjcyNDVDNi41NzI0IDE0LjMzOTQgNi4wODMxMyAxMy42MDk4IDYuMDQ3ODYgMTMuMDQ4MkM1Ljk1MzQ3IDExLjUyODggNi4wMjAwMiA4LjYxOTQ0IDYuMDY2MjEgNy4wNzY5NUM2LjA4MjgxIDYuNTE0NzcgNi41NTU0OCA2LjA0MzQ3IDcuMTE4MDQgNi4wMzA1NUM5LjA4ODYzIDUuOTg0NzMgMTMuMjYzOCA1LjkzNTc5IDEzLjY1MTggNi4zMjQyNUwyMS43MzY5IDEzLjYzOUMyMi4yNTYgMTQuMTU4NSAyMS43ODUxIDE1LjQ3MjQgMjEuMjYyIDE1Ljk5NDZMMTYuMjA5NSAyMS42MTA0Wk05Ljc3NTg1IDguMjY1QzkuMzM1NTEgNy44MjU2NiA4LjYyMzUxIDcuODI1NjYgOC4xODI4IDguMjY1QzcuNzQzNDYgOC43MDU3MSA3Ljc0MzQ2IDkuNDE3MzMgOC4xODI4IDkuODU2NjdDOC42MjM4MiAxMC4yOTY0IDkuMzM1ODIgMTAuMjk2NCA5Ljc3NTg1IDkuODU2NjdDMTAuMjE1NiA5LjQxNzMzIDEwLjIxNTYgOC43MDUzMyA5Ljc3NTg1IDguMjY1WiIvPgoJPC9nPgo8L3N2Zz4K);
- --jp-icon-terminal: url(data:image/svg+xml;base64,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);
- --jp-icon-text-editor: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8cGF0aCBjbGFzcz0ianAtaWNvbjMganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNjE2MTYxIiBkPSJNMTUgMTVIM3YyaDEydi0yem0wLThIM3YyaDEyVjd6TTMgMTNoMTh2LTJIM3Yyem0wIDhoMTh2LTJIM3Yyek0zIDN2MmgxOFYzSDN6Ii8+Cjwvc3ZnPgo=);
- --jp-icon-toc: url(data:image/svg+xml;base64,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);
- --jp-icon-tree-view: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTAgMGgyNHYyNEgweiIgZmlsbD0ibm9uZSIvPgogICAgICAgIDxwYXRoIGQ9Ik0yMiAxMVYzaC03djNIOVYzSDJ2OGg3VjhoMnYxMGg0djNoN3YtOGgtN3YzaC0yVjhoMnYzeiIvPgogICAgPC9nPgo8L3N2Zz4=);
- --jp-icon-trusted: url(data:image/svg+xml;base64,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);
- --jp-icon-undo: url(data:image/svg+xml;base64,PHN2ZyB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIxNiIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTEyLjUgOGMtMi42NSAwLTUuMDUuOTktNi45IDIuNkwyIDd2OWg5bC0zLjYyLTMuNjJjMS4zOS0xLjE2IDMuMTYtMS44OCA1LjEyLTEuODggMy41NCAwIDYuNTUgMi4zMSA3LjYgNS41bDIuMzctLjc4QzIxLjA4IDExLjAzIDE3LjE1IDggMTIuNSA4eiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-vega: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDIyIDIyIj4KICA8ZyBjbGFzcz0ianAtaWNvbjEganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjMjEyMTIxIj4KICAgIDxwYXRoIGQ9Ik0xMC42IDUuNGwyLjItMy4ySDIuMnY3LjNsNC02LjZ6Ii8+CiAgICA8cGF0aCBkPSJNMTUuOCAyLjJsLTQuNCA2LjZMNyA2LjNsLTQuOCA4djUuNWgxNy42VjIuMmgtNHptLTcgMTUuNEg1LjV2LTQuNGgzLjN2NC40em00LjQgMEg5LjhWOS44aDMuNHY3Ljh6bTQuNCAwaC0zLjRWNi41aDMuNHYxMS4xeiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-yaml: url(data:image/svg+xml;base64,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);
-}
-
-/* Icon CSS class declarations */
-
-.jp-AddIcon {
- background-image: var(--jp-icon-add);
-}
-.jp-BugIcon {
- background-image: var(--jp-icon-bug);
-}
-.jp-BuildIcon {
- background-image: var(--jp-icon-build);
-}
-.jp-CaretDownEmptyIcon {
- background-image: var(--jp-icon-caret-down-empty);
-}
-.jp-CaretDownEmptyThinIcon {
- background-image: var(--jp-icon-caret-down-empty-thin);
-}
-.jp-CaretDownIcon {
- background-image: var(--jp-icon-caret-down);
-}
-.jp-CaretLeftIcon {
- background-image: var(--jp-icon-caret-left);
-}
-.jp-CaretRightIcon {
- background-image: var(--jp-icon-caret-right);
-}
-.jp-CaretUpEmptyThinIcon {
- background-image: var(--jp-icon-caret-up-empty-thin);
-}
-.jp-CaretUpIcon {
- background-image: var(--jp-icon-caret-up);
-}
-.jp-CaseSensitiveIcon {
- background-image: var(--jp-icon-case-sensitive);
-}
-.jp-CheckIcon {
- background-image: var(--jp-icon-check);
-}
-.jp-CircleEmptyIcon {
- background-image: var(--jp-icon-circle-empty);
-}
-.jp-CircleIcon {
- background-image: var(--jp-icon-circle);
-}
-.jp-ClearIcon {
- background-image: var(--jp-icon-clear);
-}
-.jp-CloseIcon {
- background-image: var(--jp-icon-close);
-}
-.jp-CodeIcon {
- background-image: var(--jp-icon-code);
-}
-.jp-ConsoleIcon {
- background-image: var(--jp-icon-console);
-}
-.jp-CopyIcon {
- background-image: var(--jp-icon-copy);
-}
-.jp-CopyrightIcon {
- background-image: var(--jp-icon-copyright);
-}
-.jp-CutIcon {
- background-image: var(--jp-icon-cut);
-}
-.jp-DownloadIcon {
- background-image: var(--jp-icon-download);
-}
-.jp-EditIcon {
- background-image: var(--jp-icon-edit);
-}
-.jp-EllipsesIcon {
- background-image: var(--jp-icon-ellipses);
-}
-.jp-ExtensionIcon {
- background-image: var(--jp-icon-extension);
-}
-.jp-FastForwardIcon {
- background-image: var(--jp-icon-fast-forward);
-}
-.jp-FileIcon {
- background-image: var(--jp-icon-file);
-}
-.jp-FileUploadIcon {
- background-image: var(--jp-icon-file-upload);
-}
-.jp-FilterListIcon {
- background-image: var(--jp-icon-filter-list);
-}
-.jp-FolderIcon {
- background-image: var(--jp-icon-folder);
-}
-.jp-Html5Icon {
- background-image: var(--jp-icon-html5);
-}
-.jp-ImageIcon {
- background-image: var(--jp-icon-image);
-}
-.jp-InspectorIcon {
- background-image: var(--jp-icon-inspector);
-}
-.jp-JsonIcon {
- background-image: var(--jp-icon-json);
-}
-.jp-JuliaIcon {
- background-image: var(--jp-icon-julia);
-}
-.jp-JupyterFaviconIcon {
- background-image: var(--jp-icon-jupyter-favicon);
-}
-.jp-JupyterIcon {
- background-image: var(--jp-icon-jupyter);
-}
-.jp-JupyterlabWordmarkIcon {
- background-image: var(--jp-icon-jupyterlab-wordmark);
-}
-.jp-KernelIcon {
- background-image: var(--jp-icon-kernel);
-}
-.jp-KeyboardIcon {
- background-image: var(--jp-icon-keyboard);
-}
-.jp-LauncherIcon {
- background-image: var(--jp-icon-launcher);
-}
-.jp-LineFormIcon {
- background-image: var(--jp-icon-line-form);
-}
-.jp-LinkIcon {
- background-image: var(--jp-icon-link);
-}
-.jp-ListIcon {
- background-image: var(--jp-icon-list);
-}
-.jp-ListingsInfoIcon {
- background-image: var(--jp-icon-listings-info);
-}
-.jp-MarkdownIcon {
- background-image: var(--jp-icon-markdown);
-}
-.jp-NewFolderIcon {
- background-image: var(--jp-icon-new-folder);
-}
-.jp-NotTrustedIcon {
- background-image: var(--jp-icon-not-trusted);
-}
-.jp-NotebookIcon {
- background-image: var(--jp-icon-notebook);
-}
-.jp-NumberingIcon {
- background-image: var(--jp-icon-numbering);
-}
-.jp-OfflineBoltIcon {
- background-image: var(--jp-icon-offline-bolt);
-}
-.jp-PaletteIcon {
- background-image: var(--jp-icon-palette);
-}
-.jp-PasteIcon {
- background-image: var(--jp-icon-paste);
-}
-.jp-PdfIcon {
- background-image: var(--jp-icon-pdf);
-}
-.jp-PythonIcon {
- background-image: var(--jp-icon-python);
-}
-.jp-RKernelIcon {
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-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
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-/**
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-#tab-manager
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-/*-----------------------------------------------------------------------------
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-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
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-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2017, Jupyter Development Team.
-|
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-
-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2016, Jupyter Development Team.
-|
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-|----------------------------------------------------------------------------*/
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-:root {
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- ); /* leave 28px for content */
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-.jp-Toolbar {
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-/* Toolbar buttons */
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-/* This is the div we use to wrap the react component into a Widget */
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- > .jp-Toolbar {
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-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2017, Jupyter Development Team.
-|
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Copyright (c) 2014-2017, PhosphorJS Contributors
-|
-| Distributed under the terms of the BSD 3-Clause License.
-|
-| The full license is in the file LICENSE, distributed with this software.
-|----------------------------------------------------------------------------*/
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-
-/* <DEPRECATED> */ body.p-mod-override-cursor *, /* </DEPRECATED> */
-body.lm-mod-override-cursor * {
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-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2016, Jupyter Development Team.
-|
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
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-.jp-JSONEditor {
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-.jp-JSONEditor-host {
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-.jp-JSONEditor.jp-mod-error .jp-JSONEditor-host {
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-.jp-JSONEditor-commitButton {
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-.jp-JSONEditor-host.jp-mod-focused {
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-.jp-Editor.jp-mod-dropTarget {
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-
-/* BASICS */
-
-.CodeMirror {
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- height: 300px;
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-.CodeMirror-guttermarker { color: black; }
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-/* STOP */
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-.cm-searching {
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-
-/*-----------------------------------------------------------------------------
-| Private CSS variables
-|----------------------------------------------------------------------------*/
-
-:root {
- --jp-private-cell-scrolling-output-offset: 5px;
-}
-
-/*-----------------------------------------------------------------------------
-| Cell
-|----------------------------------------------------------------------------*/
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-/*-----------------------------------------------------------------------------
-| Common input/output
-|----------------------------------------------------------------------------*/
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-.jp-Cell-inputWrapper,
-.jp-Cell-outputWrapper {
- display: flex;
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-}
-
-/* Only input/output areas inside cells */
-.jp-Cell-inputArea,
-.jp-Cell-outputArea {
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-/*-----------------------------------------------------------------------------
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-|----------------------------------------------------------------------------*/
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- */
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-/*-----------------------------------------------------------------------------
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- );
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-/*-----------------------------------------------------------------------------
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-|----------------------------------------------------------------------------*/
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-/*-----------------------------------------------------------------------------
-| MarkdownCell
-|----------------------------------------------------------------------------*/
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-.jp-MarkdownCell:hover .jp-collapseHeadingButton {
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- position: absolute;
- right: 0;
- top: 0;
- bottom: 0;
-}
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Variables
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-
-/*-----------------------------------------------------------------------------
-| Styles
-|----------------------------------------------------------------------------*/
-
-.jp-NotebookPanel-toolbar {
- padding: 2px;
-}
-
-.jp-Toolbar-item.jp-Notebook-toolbarCellType .jp-select-wrapper.jp-mod-focused {
- border: none;
- box-shadow: none;
-}
-
-.jp-Notebook-toolbarCellTypeDropdown select {
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- line-height: 14px;
- border-radius: 0;
- display: block;
-}
-
-.jp-Notebook-toolbarCellTypeDropdown span {
- top: 5px !important;
-}
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Private CSS variables
-|----------------------------------------------------------------------------*/
-
-:root {
- --jp-private-notebook-dragImage-width: 304px;
- --jp-private-notebook-dragImage-height: 36px;
- --jp-private-notebook-selected-color: var(--md-blue-400);
- --jp-private-notebook-active-color: var(--md-green-400);
-}
-
-/*-----------------------------------------------------------------------------
-| Imports
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Notebook
-|----------------------------------------------------------------------------*/
-
-.jp-NotebookPanel {
- display: block;
- height: 100%;
-}
-
-.jp-NotebookPanel.jp-Document {
- min-width: 240px;
- min-height: 120px;
-}
-
-.jp-Notebook {
- padding: var(--jp-notebook-padding);
- outline: none;
- overflow: auto;
- background: var(--jp-layout-color0);
-}
-
-.jp-Notebook.jp-mod-scrollPastEnd::after {
- display: block;
- content: '';
- min-height: var(--jp-notebook-scroll-padding);
-}
-
-.jp-MainAreaWidget-ContainStrict .jp-Notebook * {
- contain: strict;
-}
-
-.jp-Notebook-render * {
- contain: none !important;
-}
-
-.jp-Notebook .jp-Cell {
- overflow: visible;
-}
-
-.jp-Notebook .jp-Cell .jp-InputPrompt {
- cursor: move;
- float: left;
-}
-
-/*-----------------------------------------------------------------------------
-| Notebook state related styling
-|
-| The notebook and cells each have states, here are the possibilities:
-|
-| - Notebook
-| - Command
-| - Edit
-| - Cell
-| - None
-| - Active (only one can be active)
-| - Selected (the cells actions are applied to)
-| - Multiselected (when multiple selected, the cursor)
-| - No outputs
-|----------------------------------------------------------------------------*/
-
-/* Command or edit modes */
-
-.jp-Notebook .jp-Cell:not(.jp-mod-active) .jp-InputPrompt {
- opacity: var(--jp-cell-prompt-not-active-opacity);
- color: var(--jp-cell-prompt-not-active-font-color);
-}
-
-.jp-Notebook .jp-Cell:not(.jp-mod-active) .jp-OutputPrompt {
- opacity: var(--jp-cell-prompt-not-active-opacity);
- color: var(--jp-cell-prompt-not-active-font-color);
-}
-
-/* cell is active */
-.jp-Notebook .jp-Cell.jp-mod-active .jp-Collapser {
- background: var(--jp-brand-color1);
-}
-
-/* cell is dirty */
-.jp-Notebook .jp-Cell.jp-mod-dirty .jp-InputPrompt {
- color: var(--jp-warn-color1);
-}
-.jp-Notebook .jp-Cell.jp-mod-dirty .jp-InputPrompt:before {
- color: var(--jp-warn-color1);
- content: '•';
-}
-
-.jp-Notebook .jp-Cell.jp-mod-active.jp-mod-dirty .jp-Collapser {
- background: var(--jp-warn-color1);
-}
-
-/* collapser is hovered */
-.jp-Notebook .jp-Cell .jp-Collapser:hover {
- box-shadow: var(--jp-elevation-z2);
- background: var(--jp-brand-color1);
- opacity: var(--jp-cell-collapser-not-active-hover-opacity);
-}
-
-/* cell is active and collapser is hovered */
-.jp-Notebook .jp-Cell.jp-mod-active .jp-Collapser:hover {
- background: var(--jp-brand-color0);
- opacity: 1;
-}
-
-/* Command mode */
-
-.jp-Notebook.jp-mod-commandMode .jp-Cell.jp-mod-selected {
- background: var(--jp-notebook-multiselected-color);
-}
-
-.jp-Notebook.jp-mod-commandMode
- .jp-Cell.jp-mod-active.jp-mod-selected:not(.jp-mod-multiSelected) {
- background: transparent;
-}
-
-/* Edit mode */
-
-.jp-Notebook.jp-mod-editMode .jp-Cell.jp-mod-active .jp-InputArea-editor {
- border: var(--jp-border-width) solid var(--jp-cell-editor-active-border-color);
- box-shadow: var(--jp-input-box-shadow);
- background-color: var(--jp-cell-editor-active-background);
-}
-
-/*-----------------------------------------------------------------------------
-| Notebook drag and drop
-|----------------------------------------------------------------------------*/
-
-.jp-Notebook-cell.jp-mod-dropSource {
- opacity: 0.5;
-}
-
-.jp-Notebook-cell.jp-mod-dropTarget,
-.jp-Notebook.jp-mod-commandMode
- .jp-Notebook-cell.jp-mod-active.jp-mod-selected.jp-mod-dropTarget {
- border-top-color: var(--jp-private-notebook-selected-color);
- border-top-style: solid;
- border-top-width: 2px;
-}
-
-.jp-dragImage {
- display: block;
- flex-direction: row;
- width: var(--jp-private-notebook-dragImage-width);
- height: var(--jp-private-notebook-dragImage-height);
- border: var(--jp-border-width) solid var(--jp-cell-editor-border-color);
- background: var(--jp-cell-editor-background);
- overflow: visible;
-}
-
-.jp-dragImage-singlePrompt {
- box-shadow: 2px 2px 4px 0px rgba(0, 0, 0, 0.12);
-}
-
-.jp-dragImage .jp-dragImage-content {
- flex: 1 1 auto;
- z-index: 2;
- font-size: var(--jp-code-font-size);
- font-family: var(--jp-code-font-family);
- line-height: var(--jp-code-line-height);
- padding: var(--jp-code-padding);
- border: var(--jp-border-width) solid var(--jp-cell-editor-border-color);
- background: var(--jp-cell-editor-background-color);
- color: var(--jp-content-font-color3);
- text-align: left;
- margin: 4px 4px 4px 0px;
-}
-
-.jp-dragImage .jp-dragImage-prompt {
- flex: 0 0 auto;
- min-width: 36px;
- color: var(--jp-cell-inprompt-font-color);
- padding: var(--jp-code-padding);
- padding-left: 12px;
- font-family: var(--jp-cell-prompt-font-family);
- letter-spacing: var(--jp-cell-prompt-letter-spacing);
- line-height: 1.9;
- font-size: var(--jp-code-font-size);
- border: var(--jp-border-width) solid transparent;
-}
-
-.jp-dragImage-multipleBack {
- z-index: -1;
- position: absolute;
- height: 32px;
- width: 300px;
- top: 8px;
- left: 8px;
- background: var(--jp-layout-color2);
- border: var(--jp-border-width) solid var(--jp-input-border-color);
- box-shadow: 2px 2px 4px 0px rgba(0, 0, 0, 0.12);
-}
-
-/*-----------------------------------------------------------------------------
-| Cell toolbar
-|----------------------------------------------------------------------------*/
-
-.jp-NotebookTools {
- display: block;
- min-width: var(--jp-sidebar-min-width);
- color: var(--jp-ui-font-color1);
- background: var(--jp-layout-color1);
- /* This is needed so that all font sizing of children done in ems is
- * relative to this base size */
- font-size: var(--jp-ui-font-size1);
- overflow: auto;
-}
-
-.jp-NotebookTools-tool {
- padding: 0px 12px 0 12px;
-}
-
-.jp-ActiveCellTool {
- padding: 12px;
- background-color: var(--jp-layout-color1);
- border-top: none !important;
-}
-
-.jp-ActiveCellTool .jp-InputArea-prompt {
- flex: 0 0 auto;
- padding-left: 0px;
-}
-
-.jp-ActiveCellTool .jp-InputArea-editor {
- flex: 1 1 auto;
- background: var(--jp-cell-editor-background);
- border-color: var(--jp-cell-editor-border-color);
-}
-
-.jp-ActiveCellTool .jp-InputArea-editor .CodeMirror {
- background: transparent;
-}
-
-.jp-MetadataEditorTool {
- flex-direction: column;
- padding: 12px 0px 12px 0px;
-}
-
-.jp-RankedPanel > :not(:first-child) {
- margin-top: 12px;
-}
-
-.jp-KeySelector select.jp-mod-styled {
- font-size: var(--jp-ui-font-size1);
- color: var(--jp-ui-font-color0);
- border: var(--jp-border-width) solid var(--jp-border-color1);
-}
-
-.jp-KeySelector label,
-.jp-MetadataEditorTool label {
- line-height: 1.4;
-}
-
-.jp-NotebookTools .jp-select-wrapper {
- margin-top: 4px;
- margin-bottom: 0px;
-}
-
-.jp-NotebookTools .jp-Collapse {
- margin-top: 16px;
-}
-
-/*-----------------------------------------------------------------------------
-| Presentation Mode (.jp-mod-presentationMode)
-|----------------------------------------------------------------------------*/
-
-.jp-mod-presentationMode .jp-Notebook {
- --jp-content-font-size1: var(--jp-content-presentation-font-size1);
- --jp-code-font-size: var(--jp-code-presentation-font-size);
-}
-
-.jp-mod-presentationMode .jp-Notebook .jp-Cell .jp-InputPrompt,
-.jp-mod-presentationMode .jp-Notebook .jp-Cell .jp-OutputPrompt {
- flex: 0 0 110px;
-}
-
-/*-----------------------------------------------------------------------------
-| Placeholder
-|----------------------------------------------------------------------------*/
-
-.jp-Cell-Placeholder {
- padding-left: 55px;
-}
-
-.jp-Cell-Placeholder-wrapper {
- background: #fff;
- border: 1px solid;
- border-color: #e5e6e9 #dfe0e4 #d0d1d5;
- border-radius: 4px;
- -webkit-border-radius: 4px;
- margin: 10px 15px;
-}
-
-.jp-Cell-Placeholder-wrapper-inner {
- padding: 15px;
- position: relative;
-}
-
-.jp-Cell-Placeholder-wrapper-body {
- background-repeat: repeat;
- background-size: 50% auto;
-}
-
-.jp-Cell-Placeholder-wrapper-body div {
- background: #f6f7f8;
- background-image: -webkit-linear-gradient(
- left,
- #f6f7f8 0%,
- #edeef1 20%,
- #f6f7f8 40%,
- #f6f7f8 100%
- );
- background-repeat: no-repeat;
- background-size: 800px 104px;
- height: 104px;
- position: relative;
-}
-
-.jp-Cell-Placeholder-wrapper-body div {
- position: absolute;
- right: 15px;
- left: 15px;
- top: 15px;
-}
-
-div.jp-Cell-Placeholder-h1 {
- top: 20px;
- height: 20px;
- left: 15px;
- width: 150px;
-}
-
-div.jp-Cell-Placeholder-h2 {
- left: 15px;
- top: 50px;
- height: 10px;
- width: 100px;
-}
-
-div.jp-Cell-Placeholder-content-1,
-div.jp-Cell-Placeholder-content-2,
-div.jp-Cell-Placeholder-content-3 {
- left: 15px;
- right: 15px;
- height: 10px;
-}
-
-div.jp-Cell-Placeholder-content-1 {
- top: 100px;
-}
-
-div.jp-Cell-Placeholder-content-2 {
- top: 120px;
-}
-
-div.jp-Cell-Placeholder-content-3 {
- top: 140px;
-}
-
-</style>
-
- <style type="text/css">
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*
-The following CSS variables define the main, public API for styling JupyterLab.
-These variables should be used by all plugins wherever possible. In other
-words, plugins should not define custom colors, sizes, etc unless absolutely
-necessary. This enables users to change the visual theme of JupyterLab
-by changing these variables.
-
-Many variables appear in an ordered sequence (0,1,2,3). These sequences
-are designed to work well together, so for example, `--jp-border-color1` should
-be used with `--jp-layout-color1`. The numbers have the following meanings:
-
-* 0: super-primary, reserved for special emphasis
-* 1: primary, most important under normal situations
-* 2: secondary, next most important under normal situations
-* 3: tertiary, next most important under normal situations
-
-Throughout JupyterLab, we are mostly following principles from Google's
-Material Design when selecting colors. We are not, however, following
-all of MD as it is not optimized for dense, information rich UIs.
-*/
-
-:root {
- /* Elevation
- *
- * We style box-shadows using Material Design's idea of elevation. These particular numbers are taken from here:
- *
- * https://github.com/material-components/material-components-web
- * https://material-components-web.appspot.com/elevation.html
- */
-
- --jp-shadow-base-lightness: 0;
- --jp-shadow-umbra-color: rgba(
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- 0.2
- );
- --jp-shadow-penumbra-color: rgba(
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- 0.14
- );
- --jp-shadow-ambient-color: rgba(
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- 0.12
- );
- --jp-elevation-z0: none;
- --jp-elevation-z1: 0px 2px 1px -1px var(--jp-shadow-umbra-color),
- 0px 1px 1px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 3px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z2: 0px 3px 1px -2px var(--jp-shadow-umbra-color),
- 0px 2px 2px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 5px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z4: 0px 2px 4px -1px var(--jp-shadow-umbra-color),
- 0px 4px 5px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 10px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z6: 0px 3px 5px -1px var(--jp-shadow-umbra-color),
- 0px 6px 10px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 18px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z8: 0px 5px 5px -3px var(--jp-shadow-umbra-color),
- 0px 8px 10px 1px var(--jp-shadow-penumbra-color),
- 0px 3px 14px 2px var(--jp-shadow-ambient-color);
- --jp-elevation-z12: 0px 7px 8px -4px var(--jp-shadow-umbra-color),
- 0px 12px 17px 2px var(--jp-shadow-penumbra-color),
- 0px 5px 22px 4px var(--jp-shadow-ambient-color);
- --jp-elevation-z16: 0px 8px 10px -5px var(--jp-shadow-umbra-color),
- 0px 16px 24px 2px var(--jp-shadow-penumbra-color),
- 0px 6px 30px 5px var(--jp-shadow-ambient-color);
- --jp-elevation-z20: 0px 10px 13px -6px var(--jp-shadow-umbra-color),
- 0px 20px 31px 3px var(--jp-shadow-penumbra-color),
- 0px 8px 38px 7px var(--jp-shadow-ambient-color);
- --jp-elevation-z24: 0px 11px 15px -7px var(--jp-shadow-umbra-color),
- 0px 24px 38px 3px var(--jp-shadow-penumbra-color),
- 0px 9px 46px 8px var(--jp-shadow-ambient-color);
-
- /* Borders
- *
- * The following variables, specify the visual styling of borders in JupyterLab.
- */
-
- --jp-border-width: 1px;
- --jp-border-color0: var(--md-grey-400);
- --jp-border-color1: var(--md-grey-400);
- --jp-border-color2: var(--md-grey-300);
- --jp-border-color3: var(--md-grey-200);
- --jp-border-radius: 2px;
-
- /* UI Fonts
- *
- * The UI font CSS variables are used for the typography all of the JupyterLab
- * user interface elements that are not directly user generated content.
- *
- * The font sizing here is done assuming that the body font size of --jp-ui-font-size1
- * is applied to a parent element. When children elements, such as headings, are sized
- * in em all things will be computed relative to that body size.
- */
-
- --jp-ui-font-scale-factor: 1.2;
- --jp-ui-font-size0: 0.83333em;
- --jp-ui-font-size1: 13px; /* Base font size */
- --jp-ui-font-size2: 1.2em;
- --jp-ui-font-size3: 1.44em;
-
- --jp-ui-font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Helvetica,
- Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol';
-
- /*
- * Use these font colors against the corresponding main layout colors.
- * In a light theme, these go from dark to light.
- */
-
- /* Defaults use Material Design specification */
- --jp-ui-font-color0: rgba(0, 0, 0, 1);
- --jp-ui-font-color1: rgba(0, 0, 0, 0.87);
- --jp-ui-font-color2: rgba(0, 0, 0, 0.54);
- --jp-ui-font-color3: rgba(0, 0, 0, 0.38);
-
- /*
- * Use these against the brand/accent/warn/error colors.
- * These will typically go from light to darker, in both a dark and light theme.
- */
-
- --jp-ui-inverse-font-color0: rgba(255, 255, 255, 1);
- --jp-ui-inverse-font-color1: rgba(255, 255, 255, 1);
- --jp-ui-inverse-font-color2: rgba(255, 255, 255, 0.7);
- --jp-ui-inverse-font-color3: rgba(255, 255, 255, 0.5);
-
- /* Content Fonts
- *
- * Content font variables are used for typography of user generated content.
- *
- * The font sizing here is done assuming that the body font size of --jp-content-font-size1
- * is applied to a parent element. When children elements, such as headings, are sized
- * in em all things will be computed relative to that body size.
- */
-
- --jp-content-line-height: 1.6;
- --jp-content-font-scale-factor: 1.2;
- --jp-content-font-size0: 0.83333em;
- --jp-content-font-size1: 14px; /* Base font size */
- --jp-content-font-size2: 1.2em;
- --jp-content-font-size3: 1.44em;
- --jp-content-font-size4: 1.728em;
- --jp-content-font-size5: 2.0736em;
-
- /* This gives a magnification of about 125% in presentation mode over normal. */
- --jp-content-presentation-font-size1: 17px;
-
- --jp-content-heading-line-height: 1;
- --jp-content-heading-margin-top: 1.2em;
- --jp-content-heading-margin-bottom: 0.8em;
- --jp-content-heading-font-weight: 500;
-
- /* Defaults use Material Design specification */
- --jp-content-font-color0: rgba(0, 0, 0, 1);
- --jp-content-font-color1: rgba(0, 0, 0, 0.87);
- --jp-content-font-color2: rgba(0, 0, 0, 0.54);
- --jp-content-font-color3: rgba(0, 0, 0, 0.38);
-
- --jp-content-link-color: var(--md-blue-700);
-
- --jp-content-font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI',
- Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji',
- 'Segoe UI Symbol';
-
- /*
- * Code Fonts
- *
- * Code font variables are used for typography of code and other monospaces content.
- */
-
- --jp-code-font-size: 13px;
- --jp-code-line-height: 1.3077; /* 17px for 13px base */
- --jp-code-padding: 5px; /* 5px for 13px base, codemirror highlighting needs integer px value */
- --jp-code-font-family-default: Menlo, Consolas, 'DejaVu Sans Mono', monospace;
- --jp-code-font-family: var(--jp-code-font-family-default);
-
- /* This gives a magnification of about 125% in presentation mode over normal. */
- --jp-code-presentation-font-size: 16px;
-
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- );
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-/* Using table instead of flexbox so that we can use break-inside property */
-/* CSS rules under this comment should not be required anymore after we move to the JupyterLab 4.0 CSS */
-
-
-.jp-CodeCell.jp-mod-outputsScrolled .jp-OutputArea-prompt {
- min-width: calc(
- var(--jp-cell-prompt-width) - var(--jp-private-cell-scrolling-output-offset)
- );
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-.jp-OutputArea-child {
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- display: table-row;
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-.jp-OutputArea-output {
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-
-<!-- Load mathjax -->
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- <!-- MathJax configuration -->
- <script type="text/x-mathjax-config">
- init_mathjax = function() {
- if (window.MathJax) {
- // MathJax loaded
- MathJax.Hub.Config({
- TeX: {
- equationNumbers: {
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- }
- },
- tex2jax: {
- inlineMath: [ ['$','$'], ["\\(","\\)"] ],
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- <!-- End of mathjax configuration --></head>
-<body class="jp-Notebook" data-jp-theme-light="true" data-jp-theme-name="JupyterLab Light">
-<div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [63]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># fetch all functions from there for testing (__name__ hack to avoid executing main)</span>
-<span class="vm">__name__</span> <span class="o">=</span> <span class="s2">"test"</span>
-<span class="n">execfile</span><span class="p">(</span><span class="s2">"./scripts/translate2modelcif.py"</span><span class="p">)</span>
-<span class="n">_main</span><span class="p">()</span>
-</pre></div>
-
- </div>
-</div>
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-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
-
-
-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>PROTEINS ONLY in fasta_file: ['c104827_g1_i1', 'c104894_g1_i2']
-Working on ./PKG Cut...
- translating c103531_g3_i1_unrelaxed_rank_1_model_3...
- preparing data... (0.02s)
- generating ModelCIF objects... (0.00s)
- processing QA scores... (0.20s)
- write to disk... (1.15s)
- ... done with c103531_g3_i1_unrelaxed_rank_1_model_3 (1.37s).
- translating c103545_g3_i2_unrelaxed_rank_1_model_3...
- preparing data... (0.08s)
- generating ModelCIF objects... (0.00s)
- processing QA scores... (5.47s)
- write to disk... (19.48s)
- ... done with c103545_g3_i2_unrelaxed_rank_1_model_3 (25.13s).
-... done with ./PKG Cut.
-</pre>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [3]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span> <span class="c1"># HC filepaths</span>
- <span class="n">cnfg_file</span> <span class="o">=</span> <span class="s2">"./PKG/config.json"</span>
- <span class="n">metadata_file</span> <span class="o">=</span> <span class="s2">"./PKG/model_archive_metadata.csv"</span>
- <span class="n">fasta_file</span> <span class="o">=</span> <span class="s2">"./PKG/Spongilla_lacustris_translated_proteome_fixed.fasta"</span>
- <span class="n">model_dir</span> <span class="o">=</span> <span class="s2">"./PKG Cut"</span>
- <span class="c1"># model_dir = "./PKG-all"</span>
- <span class="n">out_dir</span> <span class="o">=</span> <span class="s2">"./modelcif"</span>
- <span class="n">compress</span> <span class="o">=</span> <span class="kc">False</span>
- <span class="c1">#</span>
-
- <span class="c1"># parse/fetch global data</span>
- <span class="n">config_data</span> <span class="o">=</span> <span class="n">_parse_colabfold_config</span><span class="p">(</span><span class="n">cnfg_file</span><span class="p">)</span>
- <span class="n">metadata</span> <span class="o">=</span> <span class="n">_get_metadata</span><span class="p">(</span><span class="n">metadata_file</span><span class="p">)</span>
- <span class="n">seq_dict</span> <span class="o">=</span> <span class="n">_get_sequences</span><span class="p">(</span><span class="n">fasta_file</span><span class="p">,</span> <span class="n">metadata</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">compress</span><span class="p">:</span>
- <span class="n">cifext</span> <span class="o">=</span> <span class="s2">"cif.gz"</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">cifext</span> <span class="o">=</span> <span class="s2">"cif"</span>
- <span class="c1"># fetch a single randomly chosen UniProt entry for tax info</span>
- <span class="n">upkb_data</span> <span class="o">=</span> <span class="n">_fetch_upkb_entry</span><span class="p">(</span><span class="s2">"P42690"</span><span class="p">)</span>
- <span class="n">tax_info</span> <span class="o">=</span> <span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">v</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">upkb_data</span><span class="o">.</span><span class="n">items</span><span class="p">()</span> \
- <span class="k">if</span> <span class="n">k</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">"up_organism"</span><span class="p">,</span> <span class="s2">"up_ncbi_taxid"</span><span class="p">]}</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
-
-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
-
-
-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>PROTEINS ONLY in fasta_file: ['c104827_g1_i1', 'c104894_g1_i2']
-</pre>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [4]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">fle</span> <span class="o">=</span> <span class="s2">"c103531_g3_i1_unrelaxed_rank_1_model_3.pdb"</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [5]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span> <span class="n">file_prfx</span><span class="p">,</span> <span class="n">mdl_name</span> <span class="o">=</span> <span class="n">_check_model_extra_files_present</span><span class="p">(</span><span class="n">model_dir</span><span class="p">,</span>
- <span class="n">fle</span><span class="p">)</span>
- <span class="n">fle</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">model_dir</span><span class="p">,</span> <span class="n">fle</span><span class="p">)</span>
- <span class="n">mdlcf_json</span> <span class="o">=</span> <span class="n">_create_json</span><span class="p">(</span><span class="n">config_data</span><span class="p">)</span>
- <span class="n">mdlcf_json</span><span class="p">[</span><span class="s2">"tax_info"</span><span class="p">]</span> <span class="o">=</span> <span class="n">tax_info</span>
- <span class="c1"># mdl_name = [TITLE]_unrelaxed_rank_X_model_Y.pdb</span>
- <span class="n">mdl_name_parts</span> <span class="o">=</span> <span class="n">mdl_name</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'_'</span><span class="p">)</span>
- <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">mdl_name_parts</span><span class="p">)</span> <span class="o">==</span> <span class="mi">8</span>
- <span class="k">assert</span> <span class="nb">int</span><span class="p">(</span><span class="n">mdl_name_parts</span><span class="p">[</span><span class="mi">5</span><span class="p">])</span> <span class="o">==</span> <span class="mi">1</span> <span class="c1"># rank 1 only</span>
- <span class="n">mdlcf_json</span><span class="p">[</span><span class="s2">"mdl_num"</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">mdl_name_parts</span><span class="p">[</span><span class="mi">7</span><span class="p">])</span>
- <span class="n">mdlcf_json</span><span class="p">[</span><span class="s2">"mdl_title"</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'_'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">mdl_name_parts</span><span class="p">[:</span><span class="mi">3</span><span class="p">])</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [6]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span> <span class="n">ost_ent</span> <span class="o">=</span> <span class="n">_create_model_json</span><span class="p">(</span><span class="n">mdlcf_json</span><span class="p">,</span> <span class="n">fle</span><span class="p">,</span> <span class="n">seq_dict</span><span class="p">,</span> <span class="n">metadata</span><span class="p">)</span>
-
- <span class="c1"># read quality scores from JSON file</span>
- <span class="n">_get_scores</span><span class="p">(</span><span class="n">mdlcf_json</span><span class="p">,</span> <span class="n">file_prfx</span><span class="p">)</span>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [7]:</div>
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-<div class=" highlight hl-ipython3"><pre><span></span> <span class="n">_store_as_modelcif</span><span class="p">(</span><span class="n">mdlcf_json</span><span class="p">,</span> <span class="n">ost_ent</span><span class="p">,</span> <span class="n">out_dir</span><span class="p">,</span> <span class="n">mdl_name</span><span class="p">,</span> <span class="n">compress</span><span class="p">)</span>
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-<pre> generating ModelCIF objects... (0.00s)
- processing QA scores... (0.34s)
- write to disk... (1.04s)
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [8]:</div>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">scores</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="nb">open</span><span class="p">(</span><span class="s2">"./PKG Cut/c103545_g3_i2_unrelaxed_rank_1_model_3_scores.json"</span><span class="p">))</span>
-<span class="nb">print</span><span class="p">(</span><span class="n">scores</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
-</pre></div>
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-<pre>dict_keys(['max_pae', 'pae', 'plddt', 'ptm'])
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [9]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check files</span>
-<span class="n">pdb_files</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="s2">"./PKG/files_PDB.txt"</span><span class="p">)</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-<span class="n">json_files</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="s2">"./PKG/files_JSON.txt"</span><span class="p">)</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-<span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">pdb_files</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">json_files</span><span class="p">)</span>
-
-<span class="n">mdl_titles</span> <span class="o">=</span> <span class="p">[]</span>
-<span class="k">for</span> <span class="n">pdb_file</span><span class="p">,</span> <span class="n">json_file</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="nb">sorted</span><span class="p">(</span><span class="n">pdb_files</span><span class="p">),</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">json_files</span><span class="p">)):</span>
- <span class="n">splitfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">pdb_file</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
- <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">splitfile</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span>
- <span class="k">if</span> <span class="n">splitfile</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
- <span class="n">mdl_name</span><span class="p">,</span> <span class="n">mdl_ext</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">splitfile</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
- <span class="k">assert</span> <span class="n">mdl_ext</span> <span class="o">==</span> <span class="s2">".pdb"</span>
- <span class="n">splitfile_j</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">json_file</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
- <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">splitfile_j</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span>
- <span class="k">assert</span> <span class="n">splitfile_j</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">mdl_name</span><span class="si">}</span><span class="s2">_scores.json"</span>
- <span class="n">mdl_name_parts</span> <span class="o">=</span> <span class="n">mdl_name</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'_'</span><span class="p">)</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">mdl_name_parts</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">8</span> <span class="ow">or</span> <span class="n">mdl_name_parts</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span> <span class="o">!=</span> <span class="s1">'1'</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="s2">"WEIRD NAME"</span><span class="p">,</span> <span class="n">mdl_name</span><span class="p">)</span>
- <span class="n">mdl_title</span> <span class="o">=</span> <span class="s1">'_'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">mdl_name_parts</span><span class="p">[:</span><span class="mi">3</span><span class="p">])</span>
- <span class="n">mdl_titles</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">mdl_title</span><span class="p">)</span>
-
-<span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">mdl_titles</span><span class="p">))</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">mdl_titles</span><span class="p">)</span>
-</pre></div>
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-<pre>WEIRD NAME c100000_g1_i2_unrelaxed_rank_c100000_g1_i2_model_3
-WEIRD NAME c100001_g1_i1_unrelaxed_rank_1_model_c100001_g1_i1
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [10]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># all in metadata?</span>
-<span class="n">only_in_metadata</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">index</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">(</span><span class="n">mdl_titles</span><span class="p">)</span>
-<span class="k">if</span> <span class="n">only_in_metadata</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="s2">"PROTEINS ONLY in metadata:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">only_in_metadata</span><span class="p">))</span>
-<span class="n">only_in_seqs</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">mdl_titles</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">index</span><span class="p">)</span>
-<span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">only_in_seqs</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span>
-<span class="nb">len</span><span class="p">(</span><span class="n">mdl_titles</span><span class="p">),</span> <span class="nb">len</span><span class="p">(</span><span class="n">metadata</span><span class="p">),</span> <span class="nb">len</span><span class="p">(</span><span class="n">only_in_metadata</span><span class="p">)</span>
-</pre></div>
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-<pre>PROTEINS ONLY in metadata: ['c104658_g3_i5', 'c104704_g1_i1', 'c104839_g1_i1', 'c104839_g1_i3', 'c104872_g1_i1', 'c104894_g1_i3', 'c104922_g1_i2', 'c104954_g1_i2', 'c104956_g1_i1', 'c104958_g1_i1', 'c104973_g1_i2']
-</pre>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [11]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check files that were converted (input is std out from run cut to only include "translating...")</span>
-<span class="n">log_lines</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="s2">"./FromWork/docker_out_clean.txt"</span><span class="p">)</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-</pre></div>
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- </div>
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-</div>
-</div>
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-<div class="jp-Cell-inputWrapper">
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [12]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># plenty of assertions in here should also catch any errors...</span>
-<span class="n">idx</span> <span class="o">=</span> <span class="mi">0</span>
-<span class="n">timings</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
-<span class="k">while</span> <span class="n">idx</span> <span class="o"><</span> <span class="nb">len</span><span class="p">(</span><span class="n">log_lines</span><span class="p">):</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">if</span> <span class="s2">"already done..."</span> <span class="ow">in</span> <span class="n">l</span><span class="p">:</span>
- <span class="n">idx</span> <span class="o">+=</span> <span class="mi">1</span>
- <span class="k">continue</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"translating"</span><span class="p">)</span>
- <span class="n">mdl_title</span> <span class="o">=</span> <span class="s2">"_"</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'_'</span><span class="p">)[:</span><span class="mi">3</span><span class="p">])</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"preparing data"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">"s)"</span><span class="p">)</span>
- <span class="n">t_prep</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"generating ModelCIF objects"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">"s)"</span><span class="p">)</span>
- <span class="n">t_cif</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span> <span class="o">+</span> <span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"processing QA scores"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">"s)"</span><span class="p">)</span>
- <span class="n">t_qa</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span> <span class="o">+</span> <span class="mi">4</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"write to disk"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">"s)"</span><span class="p">)</span>
- <span class="n">t_write</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span> <span class="o">+</span> <span class="mi">5</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"... done with"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">"s)."</span><span class="p">)</span>
- <span class="n">t_all</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">3</span><span class="p">])</span>
- <span class="n">timings</span><span class="p">[</span><span class="n">mdl_title</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
- <span class="s2">"seq_len"</span><span class="p">:</span> <span class="nb">len</span><span class="p">(</span><span class="n">seq_dict</span><span class="p">[</span><span class="n">mdl_title</span><span class="p">]),</span>
- <span class="s2">"t_prep"</span><span class="p">:</span> <span class="n">t_prep</span><span class="p">,</span>
- <span class="s2">"t_cif"</span><span class="p">:</span> <span class="n">t_cif</span><span class="p">,</span>
- <span class="s2">"t_qa"</span><span class="p">:</span> <span class="n">t_qa</span><span class="p">,</span>
- <span class="s2">"t_write"</span><span class="p">:</span> <span class="n">t_write</span><span class="p">,</span>
- <span class="s2">"t_all"</span><span class="p">:</span> <span class="n">t_all</span>
- <span class="p">}</span>
- <span class="n">idx</span> <span class="o">+=</span> <span class="mi">6</span>
-</pre></div>
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-</div>
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [13]:</div>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"DONE </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">timings</span><span class="p">)</span><span class="si">}</span><span class="s2"> models"</span><span class="p">)</span>
-<span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">timings</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">(</span><span class="n">mdl_titles</span><span class="p">))</span> <span class="o">==</span> <span class="mi">0</span>
-<span class="n">missing_ones</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">mdl_titles</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">(</span><span class="n">timings</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"MISSING </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">missing_ones</span><span class="p">)</span><span class="si">}</span><span class="s2"> models"</span><span class="p">)</span>
-</pre></div>
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-<pre>DONE 37738 models
-MISSING 4194 models
-</pre>
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- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="o">%</span><span class="k">matplotlib</span> inline
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="n">x</span> <span class="o">=</span> <span class="p">[]</span>
-<span class="n">y</span> <span class="o">=</span> <span class="p">[]</span>
-<span class="n">y2</span> <span class="o">=</span> <span class="p">[]</span>
-<span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">timings</span><span class="o">.</span><span class="n">values</span><span class="p">():</span>
- <span class="n">x</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">v</span><span class="p">[</span><span class="s2">"seq_len"</span><span class="p">])</span>
- <span class="n">y</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">v</span><span class="p">[</span><span class="s2">"t_all"</span><span class="p">])</span>
- <span class="n">y2</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">v</span><span class="p">[</span><span class="s2">"t_write"</span><span class="p">])</span>
-<span class="c1"># fit quadratic function (for fun)</span>
-<span class="n">model</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">poly1d</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">polyfit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
-<span class="nb">print</span><span class="p">(</span><span class="n">model</span><span class="p">)</span>
-<span class="c1"># plot it</span>
-<span class="n">plt</span><span class="o">.</span><span class="n">scatter</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">)</span>
-<span class="n">plt</span><span class="o">.</span><span class="n">scatter</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y2</span><span class="p">)</span>
-<span class="n">polyline</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">max</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="mi">50</span><span class="p">)</span>
-<span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">polyline</span><span class="p">,</span> <span class="n">model</span><span class="p">(</span><span class="n">polyline</span><span class="p">))</span>
-<span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s2">"seq. length"</span><span class="p">)</span>
-<span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s2">"conversion time"</span><span class="p">)</span>
-<span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">([</span><span class="s2">"quadratic fit"</span><span class="p">,</span> <span class="s2">"total time"</span><span class="p">,</span> <span class="s2">"write time"</span><span class="p">])</span>
-<span class="n">plt</span><span class="o">.</span><span class="n">gcf</span><span class="p">()</span><span class="o">.</span><span class="n">patch</span><span class="o">.</span><span class="n">set_facecolor</span><span class="p">(</span><span class="s1">'white'</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"Average time per model (s):"</span><span class="p">,</span> <span class="nb">sum</span><span class="p">(</span><span class="n">y</span><span class="p">)</span> <span class="o">/</span> <span class="nb">len</span><span class="p">(</span><span class="n">y</span><span class="p">))</span>
-</pre></div>
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-<pre> 2
-2.106e-05 x - 4.487e-05 x + 0.05244
-Average time per model (s): 2.1000026498489452
-</pre>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check results (self-contained version)</span>
-<span class="kn">from</span> <span class="nn">ost</span> <span class="kn">import</span> <span class="n">io</span>
-<span class="n">fasta_file</span> <span class="o">=</span> <span class="s2">"./PKG/Spongilla_lacustris_translated_proteome_fixed.fasta"</span>
-<span class="n">out_dir</span> <span class="o">=</span> <span class="s2">"./modelcif"</span>
-<span class="n">cifext</span> <span class="o">=</span> <span class="s2">"cif"</span>
-<span class="n">seqs</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">LoadSequenceList</span><span class="p">(</span><span class="n">fasta_file</span><span class="p">)</span>
-<span class="n">seq_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'_'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">s</span><span class="o">.</span><span class="n">name</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'_'</span><span class="p">)[:</span><span class="mi">3</span><span class="p">]):</span> <span class="n">s</span><span class="o">.</span><span class="n">string</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">seqs</span><span class="p">}</span>
-<span class="k">for</span> <span class="n">out_fle</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">listdir</span><span class="p">(</span><span class="n">out_dir</span><span class="p">)):</span>
- <span class="k">if</span> <span class="ow">not</span> <span class="n">out_fle</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="n">cifext</span><span class="p">)</span> <span class="ow">or</span> <span class="s2">"_local_pairwise_qa"</span> <span class="ow">in</span> <span class="n">out_fle</span><span class="p">:</span>
- <span class="k">continue</span>
- <span class="n">mdl_name</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">out_fle</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
- <span class="n">mdl_title</span> <span class="o">=</span> <span class="s1">'_'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">mdl_name</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'_'</span><span class="p">)[:</span><span class="mi">3</span><span class="p">])</span>
- <span class="c1"># check if result can be read and has expected seq.</span>
- <span class="n">ent</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">LoadMMCIF</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">out_dir</span><span class="p">,</span> <span class="n">out_fle</span><span class="p">))</span>
- <span class="k">assert</span> <span class="n">ent</span><span class="o">.</span><span class="n">chain_count</span> <span class="o">==</span> <span class="mi">1</span><span class="p">,</span> <span class="sa">f</span><span class="s2">"Bad chain count </span><span class="si">{</span><span class="n">mdl_title</span><span class="si">}</span><span class="s2">"</span>
- <span class="n">ent_seq</span> <span class="o">=</span> <span class="s2">""</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">res</span><span class="o">.</span><span class="n">one_letter_code</span> <span class="k">for</span> <span class="n">res</span> <span class="ow">in</span> <span class="n">ent</span><span class="o">.</span><span class="n">residues</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">ent_seq</span> <span class="o">==</span> <span class="n">seq_dict</span><span class="p">[</span><span class="n">mdl_title</span><span class="p">],</span> <span class="sa">f</span><span class="s2">"Bad seq. </span><span class="si">{</span><span class="n">mdl_title</span><span class="si">}</span><span class="s2">"</span>
- <span class="c1"># NOTE: can use only this bit in main loop with os.path.join(out_dir, f"{mdl_name}.{cifext}")</span>
-</pre></div>
-
- </div>
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [17]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check ,-separation in metadata</span>
-<span class="k">for</span> <span class="n">title</span><span class="p">,</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">metadata</span><span class="o">.</span><span class="n">iterrows</span><span class="p">():</span>
- <span class="n">desc</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">description</span>
- <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">desc</span><span class="o">.</span><span class="n">splitlines</span><span class="p">():</span>
- <span class="k">if</span> <span class="s2">","</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
- <span class="k">assert</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"CoFFE orthogroups"</span><span class="p">)</span> <span class="ow">or</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"CoFFE GO terms"</span><span class="p">),</span> <span class="n">title</span>
-</pre></div>
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-<pre>
-<span class="ansi-red-fg">---------------------------------------------------------------------------</span>
-<span class="ansi-red-fg">AssertionError</span> Traceback (most recent call last)
-Input <span class="ansi-green-fg">In [17]</span>, in <span class="ansi-cyan-fg"><cell line: 2></span><span class="ansi-blue-fg">()</span>
-<span class="ansi-green-intense-fg ansi-bold"> 4</span> <span class="ansi-bold" style="color: rgb(0,135,0)">for</span> line <span class="ansi-bold" style="color: rgb(175,0,255)">in</span> desc<span style="color: rgb(98,98,98)">.</span>splitlines():
-<span class="ansi-green-intense-fg ansi-bold"> 5</span> <span class="ansi-bold" style="color: rgb(0,135,0)">if</span> <span style="color: rgb(175,0,0)">"</span><span style="color: rgb(175,0,0)">,</span><span style="color: rgb(175,0,0)">"</span> <span class="ansi-bold" style="color: rgb(175,0,255)">in</span> line:
-<span class="ansi-green-fg">----> 6</span> <span class="ansi-bold" style="color: rgb(0,135,0)">assert</span> line<span style="color: rgb(98,98,98)">.</span>startswith(<span style="color: rgb(175,0,0)">"</span><span style="color: rgb(175,0,0)">CoFFE orthogroups</span><span style="color: rgb(175,0,0)">"</span>) <span class="ansi-bold" style="color: rgb(175,0,255)">or</span> line<span style="color: rgb(98,98,98)">.</span>startswith(<span style="color: rgb(175,0,0)">"</span><span style="color: rgb(175,0,0)">CoFFE GO terms</span><span style="color: rgb(175,0,0)">"</span>), title
-
-<span class="ansi-red-fg">AssertionError</span>: c103545_g3_i2</pre>
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [18]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">line</span>
-</pre></div>
-
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-<pre>'CoFFE UniProt function: FUNCTION: Involved in hearing and vision as member of the USH2 complex. Necessary for elongation and maintenance of inner and outer hair cell stereocilia in the organ of Corti in the inner ear. Involved in the maintenance of the hair bundle ankle region, which connects stereocilia in cochlear hair cells of the inner ear. In retina photoreceptors, required for the maintenance of periciliary membrane complex that seems to play a role in regulating intracellular protein transport. {ECO:0000250|UniProtKB:Q80VW5}.'</pre>
-</div>
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-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [19]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># ok so we cannot blindly assume that commas are bad...</span>
-
-<span class="c1"># check longest tokens in metadata</span>
-<span class="n">new_desc</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
-<span class="k">for</span> <span class="n">title</span><span class="p">,</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">metadata</span><span class="o">.</span><span class="n">iterrows</span><span class="p">():</span>
- <span class="n">desc</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">description</span>
- <span class="n">new_lines</span> <span class="o">=</span> <span class="p">[]</span>
- <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">desc</span><span class="o">.</span><span class="n">splitlines</span><span class="p">():</span>
- <span class="n">is_loi</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"CoFFE orthogroups"</span><span class="p">)</span> \
- <span class="ow">or</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"CoFFE GO terms"</span><span class="p">)</span> \
- <span class="ow">or</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"Emapper orthogroups"</span><span class="p">)</span> \
- <span class="ow">or</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"Emapper GO terms"</span><span class="p">)</span> \
- <span class="ow">or</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"CoFFE PFAM domains"</span><span class="p">)</span> \
- <span class="ow">or</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"Emapper PFAM domains"</span><span class="p">)</span>
- <span class="k">if</span> <span class="s2">","</span> <span class="ow">in</span> <span class="n">line</span> <span class="ow">and</span> <span class="n">is_loi</span><span class="p">:</span>
- <span class="n">new_line</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">","</span><span class="p">,</span> <span class="s2">", "</span><span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">new_line</span> <span class="o">=</span> <span class="n">line</span>
- <span class="n">token_lengths</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">token</span><span class="p">)</span> <span class="k">for</span> <span class="n">token</span> <span class="ow">in</span> <span class="n">new_line</span><span class="o">.</span><span class="n">split</span><span class="p">()]</span>
- <span class="k">if</span> <span class="n">token_lengths</span> <span class="ow">and</span> <span class="nb">max</span><span class="p">(</span><span class="n">token_lengths</span><span class="p">)</span> <span class="o">></span> <span class="mi">80</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">title</span><span class="p">,</span> <span class="n">new_line</span><span class="p">)</span>
- <span class="n">new_lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">new_line</span><span class="p">)</span>
- <span class="n">new_desc</span><span class="p">[</span><span class="n">title</span><span class="p">]</span> <span class="o">=</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">"</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">new_lines</span><span class="p">)</span>
-</pre></div>
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-<pre>c2495_g1_i1 CoFFE UniProt function: FUNCTION: Protein O-mannose kinase that specifically mediates phosphorylation at the 6-position of an O-mannose of the trisaccharide (N-acetylgalactosamine (GalNAc)-beta-1,3-N-acetylglucosamine (GlcNAc)-beta-1,4-mannose) to generate phosphorylated O-mannosyl trisaccharide (N-acetylgalactosamine-beta-1,3-N-acetylglucosamine-beta-1,4-(phosphate-6-)mannose). Phosphorylated O-mannosyl trisaccharide is a carbohydrate structure present in alpha-dystroglycan (DAG1), which is required for binding laminin G-like domain-containing extracellular proteins with high affinity. Only shows kinase activity when the GalNAc-beta-3-GlcNAc-beta-terminus is linked to the 4-position of O-mannose, suggesting that this disaccharide serves as the substrate recognition motif (By similarity). {ECO:0000250}.
-</pre>
-</div>
-</div>
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-</div>
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-</div>
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-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [20]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># c2495_g1_i1 tested in MA and ok...let's check largest ones</span>
-<span class="nb">sorted</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">desc</span><span class="p">),</span> <span class="n">title</span><span class="p">]</span> <span class="k">for</span> <span class="n">title</span><span class="p">,</span> <span class="n">desc</span> <span class="ow">in</span> <span class="n">new_desc</span><span class="o">.</span><span class="n">items</span><span class="p">())[</span><span class="o">-</span><span class="mi">5</span><span class="p">:]</span>
-<span class="c1"># looks ok too...</span>
-</pre></div>
-
- </div>
-</div>
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-<pre>[[19286, 'c90048_g1_i1'],
- [20561, 'c104513_g1_i1'],
- [22685, 'c91485_g1_i1'],
- [27674, 'c95514_g1_i1'],
- [27687, 'c95514_g1_i3']]</pre>
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [35]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># checking multiline details and markdown</span>
-<span class="kn">from</span> <span class="nn">ost</span> <span class="kn">import</span> <span class="n">io</span>
-<span class="kn">import</span> <span class="nn">modelcif.reader</span>
-<span class="n">file_path</span> <span class="o">=</span> <span class="s2">"./modelcif/c103531_g3_i1_unrelaxed_rank_1_model_3.cif"</span>
-<span class="n">ent</span><span class="p">,</span> <span class="n">info</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">LoadMMCIF</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">info</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-<span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_path</span><span class="p">)</span> <span class="k">as</span> <span class="n">fh</span><span class="p">:</span>
- <span class="n">s</span><span class="p">,</span> <span class="o">=</span> <span class="n">modelcif</span><span class="o">.</span><span class="n">reader</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">fh</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="n">info</span><span class="o">.</span><span class="n">GetStructDetails</span><span class="p">()</span><span class="o">.</span><span class="n">model_details</span><span class="p">[:</span><span class="mi">300</span><span class="p">])</span>
-<span class="nb">print</span><span class="p">(</span><span class="s1">'-'</span> <span class="o">*</span> <span class="mi">80</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="n">s</span><span class="o">.</span><span class="n">model_details</span><span class="p">[:</span><span class="mi">300</span><span class="p">])</span>
-<span class="c1"># NOTE: there may be a bug in OST's multiline parsing in terms of keeping line breaks intact...</span>
-<span class="c1"># ...and lines are stripped so that we lose the trailing 2 spaces...</span>
-</pre></div>
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-<pre>Model generated using ColabFold v1.2.0 with AlphaFold producing 5 models with 3 recycles each without model relaxation without templates ranked by pLDDT starting from an MSA from MMseqs2 (UniRef+Environmental)
-Emapper preferred name [EggNOG]: -
-Emapper description [EggNOG]: -
-CoFFE preferred name [E
---------------------------------------------------------------------------------
-Model generated using ColabFold v1.2.0 with AlphaFold producing 5 models with 3 recycles each without model relaxation without templates ranked by pLDDT starting from an MSA from MMseqs2 (UniRef+Environmental)
-
-Emapper preferred name [EggNOG]: -
-Emapper description [EggNOG]: -
-CoFFE preferred name [
-</pre>
-</div>
-</div>
-
-</div>
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-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [36]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">markdown</span>
-<span class="n">markdown_test</span> <span class="o">=</span> <span class="s2">"""isoform ID: c103531_g3_i1</span>
-
-<span class="s2">And **fat** and *emphasized* markdown with lists:</span>
-
-<span class="s2">- item1</span>
-<span class="s2">- item2</span>
-
-<span class="s2">and [links](https://github.com).</span>
-
-<span class="s2">Note that markdown ignores linebreaks</span>
-<span class="s2">unless two spaces at end </span>
-<span class="s2"><- as in line above"""</span>
-<span class="nb">print</span><span class="p">(</span><span class="n">markdown_test</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="s1">'-'</span> <span class="o">*</span> <span class="mi">80</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="n">markdown</span><span class="o">.</span><span class="n">markdown</span><span class="p">(</span><span class="n">markdown_test</span><span class="p">))</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
-
-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
-
-
-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>isoform ID: c103531_g3_i1
-
-And **fat** and *emphasized* markdown with lists:
-
-- item1
-- item2
-
-and [links](https://github.com).
-
-Note that markdown ignores linebreaks
-unless two spaces at end
-<- as in line above
---------------------------------------------------------------------------------
-<p>isoform ID: c103531_g3_i1</p>
-<p>And <strong>fat</strong> and <em>emphasized</em> markdown with lists:</p>
-<ul>
-<li>item1</li>
-<li>item2</li>
-</ul>
-<p>and <a href="https://github.com">links</a>.</p>
-<p>Note that markdown ignores linebreaks
-unless two spaces at end<br />
-&lt;- as in line above</p>
-</pre>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [2]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># test zip file speed and size</span>
-<span class="kn">from</span> <span class="nn">timeit</span> <span class="kn">import</span> <span class="n">default_timer</span> <span class="k">as</span> <span class="n">timer</span>
-<span class="kn">import</span> <span class="nn">os</span><span class="o">,</span> <span class="nn">zipfile</span><span class="o">,</span> <span class="nn">gzip</span><span class="o">,</span> <span class="nn">shutil</span>
-
-<span class="k">def</span> <span class="nf">zip_test</span><span class="p">(</span><span class="n">compression</span><span class="p">,</span> <span class="n">level</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
- <span class="n">zip_file</span> <span class="o">=</span> <span class="s2">"test.zip"</span>
- <span class="n">files</span> <span class="o">=</span> <span class="p">[</span><span class="s2">"modelcif/c103531_g3_i1_unrelaxed_rank_1_model_3_local_pairwise_qa.cif"</span><span class="p">]</span>
- <span class="n">files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">"modelcif/c103545_g3_i2_unrelaxed_rank_1_model_3_local_pairwise_qa.cif"</span><span class="p">)</span>
- <span class="n">pstart</span> <span class="o">=</span> <span class="n">timer</span><span class="p">()</span>
- <span class="k">if</span> <span class="n">compression</span> <span class="o">==</span> <span class="s2">"gzip"</span><span class="p">:</span>
- <span class="n">file_size</span> <span class="o">=</span> <span class="mi">0</span>
- <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
- <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file</span><span class="p">,</span> <span class="s1">'rb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f_in</span><span class="p">:</span>
- <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">zip_file</span><span class="p">,</span> <span class="s1">'wb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f_out</span><span class="p">:</span>
- <span class="n">shutil</span><span class="o">.</span><span class="n">copyfileobj</span><span class="p">(</span><span class="n">f_in</span><span class="p">,</span> <span class="n">f_out</span><span class="p">)</span>
- <span class="n">file_size</span> <span class="o">+=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">getsize</span><span class="p">(</span><span class="n">zip_file</span><span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="k">with</span> <span class="n">zipfile</span><span class="o">.</span><span class="n">ZipFile</span><span class="p">(</span><span class="n">zip_file</span><span class="p">,</span> <span class="s1">'w'</span><span class="p">,</span> <span class="n">compression</span><span class="p">,</span> <span class="n">compresslevel</span><span class="o">=</span><span class="n">level</span><span class="p">)</span> <span class="k">as</span> <span class="n">myzip</span><span class="p">:</span>
- <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
- <span class="n">myzip</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">file</span><span class="p">)</span>
- <span class="n">file_size</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">getsize</span><span class="p">(</span><span class="n">zip_file</span><span class="p">)</span>
- <span class="c1"># for comparison full translation time for the files (i.e. from running _main)</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
- <span class="n">ref_time</span> <span class="o">=</span> <span class="s2">"1.38s"</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">ref_time</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="mf">1.38</span><span class="o">+</span><span class="mf">24.21</span><span class="si">}</span><span class="s2">s"</span>
- <span class="k">if</span> <span class="n">compression</span> <span class="o">==</span> <span class="n">zipfile</span><span class="o">.</span><span class="n">ZIP_STORED</span><span class="p">:</span>
- <span class="n">label</span> <span class="o">=</span> <span class="s2">"none "</span>
- <span class="k">elif</span> <span class="n">compression</span> <span class="o">==</span> <span class="n">zipfile</span><span class="o">.</span><span class="n">ZIP_DEFLATED</span><span class="p">:</span>
- <span class="k">if</span> <span class="n">level</span><span class="p">:</span>
- <span class="n">label</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"gz(</span><span class="si">{</span><span class="n">level</span><span class="si">}</span><span class="s2">)"</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">label</span> <span class="o">=</span> <span class="s2">"gz "</span>
- <span class="k">elif</span> <span class="n">compression</span> <span class="o">==</span> <span class="n">zipfile</span><span class="o">.</span><span class="n">ZIP_BZIP2</span><span class="p">:</span>
- <span class="k">if</span> <span class="n">level</span><span class="p">:</span>
- <span class="n">label</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"bz(</span><span class="si">{</span><span class="n">level</span><span class="si">}</span><span class="s2">)"</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">label</span> <span class="o">=</span> <span class="s2">"bz "</span>
- <span class="k">elif</span> <span class="n">compression</span> <span class="o">==</span> <span class="n">zipfile</span><span class="o">.</span><span class="n">ZIP_LZMA</span><span class="p">:</span>
- <span class="n">label</span> <span class="o">=</span> <span class="s2">"lzma "</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">label</span> <span class="o">=</span> <span class="s2">"gzip "</span>
- <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"- </span><span class="si">{</span><span class="n">label</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">timer</span><span class="p">()</span><span class="o">-</span><span class="n">pstart</span><span class="si">:</span><span class="s2">.2f</span><span class="si">}</span><span class="s2">s vs </span><span class="si">{</span><span class="n">ref_time</span><span class="si">}</span><span class="s2">, </span><span class="si">{</span><span class="n">file_size</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
- <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">zip_file</span><span class="p">)</span>
-
-<span class="n">zip_test</span><span class="p">(</span><span class="n">zipfile</span><span class="o">.</span><span class="n">ZIP_STORED</span><span class="p">)</span>
-<span class="n">zip_test</span><span class="p">(</span><span class="s2">"gzip"</span><span class="p">)</span>
-<span class="n">zip_test</span><span class="p">(</span><span class="n">zipfile</span><span class="o">.</span><span class="n">ZIP_DEFLATED</span><span class="p">)</span>
-<span class="n">zip_test</span><span class="p">(</span><span class="n">zipfile</span><span class="o">.</span><span class="n">ZIP_DEFLATED</span><span class="p">,</span> <span class="mi">9</span><span class="p">)</span>
-<span class="n">zip_test</span><span class="p">(</span><span class="n">zipfile</span><span class="o">.</span><span class="n">ZIP_BZIP2</span><span class="p">)</span>
-<span class="n">zip_test</span><span class="p">(</span><span class="n">zipfile</span><span class="o">.</span><span class="n">ZIP_BZIP2</span><span class="p">,</span> <span class="mi">9</span><span class="p">)</span>
-<span class="n">zip_test</span><span class="p">(</span><span class="n">zipfile</span><span class="o">.</span><span class="n">ZIP_LZMA</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
-
-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
-
-
-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>- none : 3.84s vs 25.59s, 27824253
-- gzip : 2.70s vs 25.59s, 5417406
-- gz : 0.87s vs 25.59s, 5389143
-- gz(9): 2.74s vs 25.59s, 5417802
-- bz : 1.61s vs 25.59s, 3802066
-- bz(9): 1.56s vs 25.59s, 3802066
-- lzma : 22.27s vs 25.59s, 2083062
-</pre>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div>
-<div class="jp-Cell jp-MarkdownCell jp-Notebook-cell">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea"><div class="jp-InputPrompt jp-InputArea-prompt">
-</div><div class="jp-RenderedHTMLCommon jp-RenderedMarkdown jp-MarkdownOutput " data-mime-type="text/markdown">
-<p>FAZIT: lzma is too slow but bzip2 has good compromise of size vs speed</p>
-
-</div>
-</div>
-</div>
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check out pdbx</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">from</span> <span class="nn">timeit</span> <span class="kn">import</span> <span class="n">default_timer</span> <span class="k">as</span> <span class="n">timer</span>
-<span class="kn">from</span> <span class="nn">pdbx.reader.PdbxReader</span> <span class="kn">import</span> <span class="n">PdbxReader</span>
-<span class="kn">from</span> <span class="nn">pdbx.writer.PdbxWriter</span> <span class="kn">import</span> <span class="n">PdbxWriter</span>
-<span class="n">test_file</span> <span class="o">=</span> <span class="s2">"modelcif_MA_test/c103531_g3_i1_unrelaxed_rank_1_model_3.cif"</span>
-<span class="c1"># test_file = "modelcif_MA_test/AF-P38129-F1-model_v3.cif"</span>
-<span class="c1"># test_file = "modelcif_MA_test/ma-bak-cepc-0001.cif"</span>
-<span class="c1"># test_file = "modelcif_MA_test/1crn.cif"</span>
-<span class="n">test_file_out</span> <span class="o">=</span> <span class="s2">"modelcif_MA_test/test.cif"</span>
-<span class="n">pstart</span> <span class="o">=</span> <span class="n">timer</span><span class="p">()</span>
-<span class="n">pdbx_data</span> <span class="o">=</span> <span class="p">[]</span>
-<span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">test_file</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f_in</span><span class="p">:</span>
- <span class="n">pdbxR</span> <span class="o">=</span> <span class="n">PdbxReader</span><span class="p">(</span><span class="n">f_in</span><span class="p">)</span>
- <span class="n">pdbxR</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">pdbx_data</span><span class="p">)</span>
-<span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">test_file_out</span><span class="p">,</span> <span class="s1">'w'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f_out</span><span class="p">:</span>
- <span class="n">pdbxW</span> <span class="o">=</span> <span class="n">PdbxWriter</span><span class="p">(</span><span class="n">f_out</span><span class="p">)</span>
- <span class="n">pdbxW</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">pdbx_data</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">getsize</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span><span class="si">}</span><span class="s2"> vs </span><span class="si">{</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">getsize</span><span class="p">(</span><span class="n">test_file_out</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span> \
- <span class="sa">f</span><span class="s2">" in </span><span class="si">{</span><span class="n">timer</span><span class="p">()</span><span class="o">-</span><span class="n">pstart</span><span class="si">:</span><span class="s2">.2f</span><span class="si">}</span><span class="s2">s"</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
-
-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
-
-
-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>137179 vs 184836 in 0.25s
-</pre>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div>
-<div class="jp-Cell jp-MarkdownCell jp-Notebook-cell">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea"><div class="jp-InputPrompt jp-InputArea-prompt">
-</div><div class="jp-RenderedHTMLCommon jp-RenderedMarkdown jp-MarkdownOutput " data-mime-type="text/markdown">
-<p>FAZIT: adds lots of spaces but doesn't remove anything<br>
-ISSUE: quotes around "stop_..." removed...</p>
-
-</div>
-</div>
-</div>
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [2]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check out gemmi</span>
-<span class="kn">import</span> <span class="nn">gemmi</span>
-<span class="n">pstart</span> <span class="o">=</span> <span class="n">timer</span><span class="p">()</span>
-<span class="n">doc</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
-<span class="n">doc</span><span class="o">.</span><span class="n">write_file</span><span class="p">(</span><span class="n">test_file_out</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">getsize</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span><span class="si">}</span><span class="s2"> vs </span><span class="si">{</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">getsize</span><span class="p">(</span><span class="n">test_file_out</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span> \
- <span class="sa">f</span><span class="s2">" in </span><span class="si">{</span><span class="n">timer</span><span class="p">()</span><span class="o">-</span><span class="n">pstart</span><span class="si">:</span><span class="s2">.2f</span><span class="si">}</span><span class="s2">s"</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
-
-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
-
-
-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>137179 vs 137099 in 0.03s
-</pre>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div>
-<div class="jp-Cell jp-MarkdownCell jp-Notebook-cell">
-<div class="jp-Cell-inputWrapper">
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-</div><div class="jp-RenderedHTMLCommon jp-RenderedMarkdown jp-MarkdownOutput " data-mime-type="text/markdown">
-<p>FAZIT: much faster than pdbx, space handling similar to python-modelcif and also not removing anything and handling "stop_..." properly</p>
-<p>Also note that neither of the two messes up the order of tables and so files are easily comparable!</p>
-<p><strong>FAZIT</strong>: gemmi is good!</p>
-
-</div>
-</div>
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [14]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># quick test changing data_ block name</span>
-<span class="n">doc</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
-<span class="n">doc</span><span class="o">.</span><span class="n">sole_block</span><span class="p">()</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s1">'test'</span>
-<span class="n">doc</span><span class="o">.</span><span class="n">write_file</span><span class="p">(</span><span class="n">test_file_out</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [3]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># parsing pdbx</span>
-<span class="c1"># see https://mmcif.wwpdb.org/docs/sw-examples/python/html/</span>
-<span class="c1"># -> all very low level</span>
-<span class="n">block</span> <span class="o">=</span> <span class="n">pdbx_data</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-<span class="k">if</span> <span class="n">block</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="s2">"ma_qa_metric"</span><span class="p">):</span>
- <span class="n">dc</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">getObj</span><span class="p">(</span><span class="s2">"ma_qa_metric"</span><span class="p">)</span>
- <span class="n">categoryName</span><span class="p">,</span> <span class="n">attributeNameList</span><span class="p">,</span> <span class="n">rowList</span> <span class="o">=</span> <span class="n">dc</span><span class="o">.</span><span class="n">get</span><span class="p">()</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">categoryName</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">attributeNameList</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">rowList</span><span class="p">)</span>
-</pre></div>
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-</div>
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-<pre>ma_qa_metric
-['id', 'name', 'description', 'type', 'mode', 'type_other_details', 'software_group_id']
-[['1', 'pLDDT', 'Predicted accuracy according to the CA-only lDDT in [0,100]', 'pLDDT', 'global', '.', '.'], ['2', 'pTM', 'Predicted accuracy according to the TM-score score in [0,1]', 'pTM', 'global', '.', '.'], ['3', 'pLDDT', 'Predicted accuracy according to the CA-only lDDT in [0,100]', 'pLDDT', 'local', '.', '.'], ['4', 'PAE', 'Predicted aligned error (in Angstroms)', 'PAE', 'local-pairwise', '.', '.']]
-</pre>
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [4]:</div>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># parsing gemmi</span>
-<span class="c1"># see https://gemmi.readthedocs.io/en/latest/cif.html#block</span>
-<span class="n">block</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">sole_block</span><span class="p">()</span>
-<span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find_mmcif_category</span><span class="p">(</span><span class="s2">"_ma_qa_metric."</span><span class="p">)</span>
-<span class="k">if</span> <span class="n">table</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">table</span><span class="o">.</span><span class="n">get_prefix</span><span class="p">())</span>
- <span class="nb">print</span><span class="p">([</span><span class="n">tag</span> <span class="k">for</span> <span class="n">tag</span> <span class="ow">in</span> <span class="n">table</span><span class="o">.</span><span class="n">tags</span><span class="p">])</span>
- <span class="nb">print</span><span class="p">([[</span><span class="n">col</span> <span class="k">for</span> <span class="n">col</span> <span class="ow">in</span> <span class="n">row</span><span class="p">]</span> <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">])</span>
-</pre></div>
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-<pre>_ma_qa_metric.
-['_ma_qa_metric.id', '_ma_qa_metric.name', '_ma_qa_metric.description', '_ma_qa_metric.type', '_ma_qa_metric.mode', '_ma_qa_metric.type_other_details', '_ma_qa_metric.software_group_id']
-[['1', 'pLDDT', "'Predicted accuracy according to the CA-only lDDT in [0,100]'", 'pLDDT', 'global', '.', '.'], ['2', 'pTM', "'Predicted accuracy according to the TM-score score in [0,1]'", 'pTM', 'global', '.', '.'], ['3', 'pLDDT', "'Predicted accuracy according to the CA-only lDDT in [0,100]'", 'pLDDT', 'local', '.', '.'], ['4', 'PAE', "'Predicted aligned error (in Angstroms)'", 'PAE', 'local-pairwise', '.', '.']]
-</pre>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [15]:</div>
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- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># note: "row.str(#) or "gemmi.cif.as_string" map "." or "?" to "" and remove quotes from strings</span>
-<span class="k">if</span> <span class="n">table</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">([[</span><span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">as_string</span><span class="p">(</span><span class="n">col</span><span class="p">)</span> <span class="k">for</span> <span class="n">col</span> <span class="ow">in</span> <span class="n">row</span><span class="p">]</span> <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">])</span>
-<span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s1">'"</span><span class="si">{</span><span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">as_string</span><span class="p">(</span><span class="s2">"?"</span><span class="p">)</span><span class="si">}</span><span class="s1">"'</span><span class="p">)</span>
-</pre></div>
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-<pre>[['1', 'pLDDT', 'Predicted accuracy according to the CA-only lDDT in [0,100]', 'pLDDT', 'global', '', ''], ['2', 'pTM', 'Predicted accuracy according to the TM-score score in [0,1]', 'pTM', 'global', '', ''], ['3', 'pLDDT', 'Predicted accuracy according to the CA-only lDDT in [0,100]', 'pLDDT', 'local', '', ''], ['4', 'PAE', 'Predicted aligned error (in Angstroms)', 'PAE', 'local-pairwise', '', '']]
-""
-</pre>
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [8]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># use find with desired columns (incl. optional ones)</span>
-<span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_ma_qa_metric."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"id"</span><span class="p">,</span> <span class="s2">"mode"</span><span class="p">,</span> <span class="s2">"name"</span><span class="p">,</span> <span class="s2">"type"</span><span class="p">,</span> <span class="s2">"?meh"</span><span class="p">])</span>
-<span class="nb">print</span><span class="p">(</span><span class="n">table</span><span class="o">.</span><span class="n">has_column</span><span class="p">(</span><span class="mi">4</span><span class="p">))</span>
-<span class="c1"># and look for rows according to first column</span>
-<span class="nb">print</span><span class="p">(</span><span class="n">table</span><span class="o">.</span><span class="n">find_row</span><span class="p">(</span><span class="s2">"3"</span><span class="p">))</span>
-<span class="c1"># and get dictionary (as is)</span>
-<span class="nb">print</span><span class="p">(</span><span class="n">block</span><span class="o">.</span><span class="n">get_mmcif_category</span><span class="p">(</span><span class="s2">"_ma_qa_metric."</span><span class="p">,</span> <span class="n">raw</span><span class="o">=</span><span class="kc">True</span><span class="p">))</span>
-<span class="c1"># or nicely processed (? and . becoming None)</span>
-<span class="n">block</span><span class="o">.</span><span class="n">get_mmcif_category</span><span class="p">(</span><span class="s2">"_ma_qa_metric."</span><span class="p">)</span>
-</pre></div>
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-<pre>False
-<gemmi.cif.Table.Row: 3 local pLDDT pLDDT None>
-{'id': ['1', '2', '3', '4'], 'name': ['pLDDT', 'pTM', 'pLDDT', 'PAE'], 'description': ["'Predicted accuracy according to the CA-only lDDT in [0,100]'", "'Predicted accuracy according to the TM-score score in [0,1]'", "'Predicted accuracy according to the CA-only lDDT in [0,100]'", "'Predicted aligned error (in Angstroms)'"], 'type': ['pLDDT', 'pTM', 'pLDDT', 'PAE'], 'mode': ['global', 'global', 'local', 'local-pairwise'], 'type_other_details': ['.', '.', '.', '.'], 'software_group_id': ['.', '.', '.', '.']}
-</pre>
-</div>
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-<pre>{'id': ['1', '2', '3', '4'],
- 'name': ['pLDDT', 'pTM', 'pLDDT', 'PAE'],
- 'description': ['Predicted accuracy according to the CA-only lDDT in [0,100]',
- 'Predicted accuracy according to the TM-score score in [0,1]',
- 'Predicted accuracy according to the CA-only lDDT in [0,100]',
- 'Predicted aligned error (in Angstroms)'],
- 'type': ['pLDDT', 'pTM', 'pLDDT', 'PAE'],
- 'mode': ['global', 'global', 'local', 'local-pairwise'],
- 'type_other_details': [False, False, False, False],
- 'software_group_id': [False, False, False, False]}</pre>
-</div>
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- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># some ways to deal with optional and missing (? or .) data</span>
-<span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_software."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"name"</span><span class="p">,</span> <span class="s2">"?location"</span><span class="p">,</span> <span class="s2">"?version"</span><span class="p">,</span> <span class="s2">"?citation_id"</span><span class="p">,</span> <span class="s2">"?meh"</span><span class="p">])</span>
-<span class="n">display</span><span class="p">([[(</span><span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">bool</span><span class="p">(</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="n">idx</span><span class="p">)))</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">row</span><span class="p">))]</span> <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">])</span>
-<span class="n">display</span><span class="p">([[(</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="k">else</span> <span class="s1">''</span><span class="p">)</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">row</span><span class="p">))]</span> <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">])</span>
-</pre></div>
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-<pre>[[True, True, True, True, False],
- [True, True, False, True, False],
- [True, True, False, True, False]]</pre>
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-<pre>[['ColabFold', 'https://github.com/sokrypton/ColabFold', '1.2.0', '1', ''],
- ['MMseqs2', 'https://github.com/soedinglab/mmseqs2', '', '2', ''],
- ['AlphaFold', 'https://github.com/deepmind/alphafold', '', '3', '']]</pre>
-</div>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># note that the above also works for completely missing tables</span>
-<span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_meh."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"name"</span><span class="p">,</span> <span class="s2">"?location"</span><span class="p">,</span> <span class="s2">"?version"</span><span class="p">,</span> <span class="s2">"?citation_id"</span><span class="p">,</span> <span class="s2">"?meh"</span><span class="p">])</span>
-<span class="n">display</span><span class="p">([[(</span><span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">bool</span><span class="p">(</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="n">idx</span><span class="p">)))</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">row</span><span class="p">))]</span> <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">])</span>
-</pre></div>
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-</div><div class="jp-RenderedHTMLCommon jp-RenderedMarkdown jp-MarkdownOutput " data-mime-type="text/markdown">
-<h1 id="ModelCIF--%3E-MA">ModelCIF -> MA<a class="anchor-link" href="#ModelCIF--%3E-MA">¶</a></h1>
-</div>
-</div>
-</div>
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [2]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">gemmi</span>
-
-<span class="c1"># define converters for printing or for html (here markdown used for display)</span>
-<span class="k">def</span> <span class="nf">_make_url</span><span class="p">(</span><span class="n">link_text</span><span class="p">,</span> <span class="n">link_url</span><span class="p">):</span>
- <span class="k">return</span> <span class="sa">f</span><span class="s2">"[</span><span class="si">{</span><span class="n">link_text</span><span class="si">}</span><span class="s2">](</span><span class="si">{</span><span class="n">link_url</span><span class="si">}</span><span class="s2">)"</span>
-<span class="k">def</span> <span class="nf">_make_list</span><span class="p">(</span><span class="n">list_top</span><span class="p">,</span> <span class="n">list_items</span><span class="p">):</span>
- <span class="n">list_texts</span> <span class="o">=</span> <span class="p">[</span><span class="sa">f</span><span class="s2">"- </span><span class="si">{</span><span class="n">item</span><span class="si">}</span><span class="s2">"</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">list_items</span><span class="p">]</span>
- <span class="n">list_text</span> <span class="o">=</span> <span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">list_texts</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">list_texts</span><span class="p">:</span>
- <span class="k">return</span><span class="p">(</span><span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">list_top</span><span class="si">}</span><span class="se">\n</span><span class="si">{</span><span class="n">list_text</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
-<span class="k">def</span> <span class="nf">_make_multiline_text</span><span class="p">(</span><span class="n">lines</span><span class="p">):</span>
- <span class="k">return</span> <span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span>
-<span class="k">def</span> <span class="nf">_make_paragraph</span><span class="p">(</span><span class="n">text</span><span class="p">):</span>
- <span class="k">return</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">text</span><span class="si">}</span><span class="se">\n\n</span><span class="s2">"</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [24]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># define test files for translations below</span>
-<span class="n">test_files</span> <span class="o">=</span> <span class="p">[</span>
- <span class="s2">"modelcif_MA_test/c103531_g3_i1_unrelaxed_rank_1_model_3.cif"</span><span class="p">,</span>
- <span class="s2">"modelcif_MA_test/AF-P38129-F1-model_v3.cif"</span><span class="p">,</span>
- <span class="s2">"modelcif_MA_test/ma-bak-cepc-0001.cif"</span><span class="p">,</span>
- <span class="s2">"modelcif_MA_test/1crn.cif"</span><span class="p">,</span>
- <span class="s2">"modelcif_MA_test/Tara_A0A1B0GTU1-O75152_unrelaxed_rank_1_model_1.cif"</span><span class="p">,</span>
- <span class="s2">"modelcif_MA_test/Var3D_I6XD65_1046.cif"</span><span class="p">,</span>
- <span class="s2">"modelcif_MA_test/Var3D_L7N665_1046.cif"</span><span class="p">,</span>
- <span class="s2">"modelcif_MA_test/Var3D_P9WIE5_3767.cif"</span><span class="p">,</span>
- <span class="s2">"modelcif_MA_test/ORNL_F0JBU9_9DELT.cif"</span><span class="p">,</span>
-<span class="p">]</span>
-
-<span class="c1"># open one for quick testing</span>
-<span class="n">doc</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">test_files</span><span class="p">[</span><span class="o">-</span><span class="mi">4</span><span class="p">])</span>
-<span class="n">block</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">sole_block</span><span class="p">()</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [18]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># easy: look for unique model details (same for title; already in ParseCIF)</span>
-<span class="n">abstract</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find_value</span><span class="p">(</span><span class="s2">"_struct.pdbx_model_details"</span><span class="p">)</span>
-<span class="k">if</span> <span class="n">abstract</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">as_string</span><span class="p">(</span><span class="n">abstract</span><span class="p">)[:</span><span class="mi">400</span><span class="p">])</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
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-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
-
-
-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>Model generated using ColabFold v1.2.0 with AlphaFold producing 5 models with 3 recycles each without model relaxation without templates ranked by pLDDT starting from an MSA from MMseqs2 (UniRef+Environmental)
-
-Emapper preferred name [EggNOG]: -
-Emapper description [EggNOG]: -
-CoFFE preferred name [EggNOG]: PLA2G15
-CoFFE description [EggNOG]: Lecithin:cholesterol acyltransferase
-CoFFE UniProt func
-</pre>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [10]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check out entity parsing from ParseCIF</span>
-<span class="c1"># -> CHANGES: asym_ids as list of chains (wasn't used anyways), make align and </span>
-<span class="k">def</span> <span class="nf">_get_chain_entity</span><span class="p">(</span><span class="n">block</span><span class="p">):</span>
- <span class="n">chain_entity</span> <span class="o">=</span> <span class="p">{}</span>
-
- <span class="n">ma_target_entity</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span>
- <span class="s2">"_ma_target_entity_instance."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"asym_id"</span><span class="p">,</span> <span class="s2">"entity_id"</span><span class="p">]</span>
- <span class="p">)</span>
- <span class="k">if</span> <span class="n">ma_target_entity</span><span class="p">:</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">ma_target_entity</span><span class="p">:</span>
- <span class="k">if</span> <span class="n">row</span><span class="p">[</span><span class="s2">"entity_id"</span><span class="p">]</span> <span class="ow">in</span> <span class="n">chain_entity</span><span class="p">:</span>
- <span class="n">chain_entity</span><span class="p">[</span><span class="n">row</span><span class="p">[</span><span class="s2">"entity_id"</span><span class="p">]][</span><span class="s2">"asym_ids"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
- <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">as_string</span><span class="p">(</span><span class="n">row</span><span class="p">[</span><span class="s2">"asym_id"</span><span class="p">])</span>
- <span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">chain_entity</span><span class="p">[</span><span class="n">row</span><span class="p">[</span><span class="s2">"entity_id"</span><span class="p">]]</span> <span class="o">=</span> <span class="p">{</span>
- <span class="s2">"asym_ids"</span><span class="p">:</span> <span class="p">[</span><span class="n">row</span><span class="p">[</span><span class="s2">"asym_id"</span><span class="p">]],</span>
- <span class="s2">"ma_target_ref_db_details"</span><span class="p">:</span> <span class="p">[],</span>
- <span class="p">}</span>
-
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_entity."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"id"</span><span class="p">,</span> <span class="s2">"pdbx_description"</span><span class="p">]):</span>
- <span class="n">chain_entity</span><span class="p">[</span><span class="n">row</span><span class="p">[</span><span class="s2">"id"</span><span class="p">]]</span><span class="o">.</span><span class="n">update</span><span class="p">(</span>
- <span class="p">{</span><span class="s2">"pdbx_description"</span><span class="p">:</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">as_string</span><span class="p">(</span><span class="n">row</span><span class="p">[</span><span class="s2">"pdbx_description"</span><span class="p">])}</span>
- <span class="p">)</span>
-
- <span class="n">cols</span> <span class="o">=</span> <span class="p">[</span>
- <span class="s2">"target_entity_id"</span><span class="p">,</span>
- <span class="s2">"db_accession"</span><span class="p">,</span>
- <span class="s2">"db_name"</span><span class="p">,</span>
- <span class="s2">"?db_name_other_details"</span><span class="p">,</span>
- <span class="s2">"?organism_scientific"</span><span class="p">,</span>
- <span class="s2">"?seq_db_align_begin"</span><span class="p">,</span>
- <span class="s2">"?seq_db_align_end"</span><span class="p">,</span>
- <span class="p">]</span>
- <span class="c1"># NOTE: row[col] doesn't work with '?' in find! Bad crashed happen if you try...</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_ma_target_ref_db_details."</span><span class="p">,</span> <span class="n">cols</span><span class="p">):</span>
- <span class="n">json_obj</span> <span class="o">=</span> <span class="p">{}</span>
- <span class="n">target_entity_id</span> <span class="o">=</span> <span class="n">row</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="c1"># make sure this stays at idx 0 in cols!</span>
- <span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">cq</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">cols</span><span class="p">):</span>
- <span class="k">if</span> <span class="n">cq</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">'?'</span><span class="p">):</span>
- <span class="n">col</span> <span class="o">=</span> <span class="n">cq</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span>
- <span class="k">if</span> <span class="ow">not</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="n">idx</span><span class="p">):</span>
- <span class="n">json_obj</span><span class="p">[</span><span class="n">col</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
- <span class="k">continue</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">col</span> <span class="o">=</span> <span class="n">cq</span>
- <span class="k">if</span> <span class="n">col</span> <span class="o">!=</span> <span class="s2">"target_entity_id"</span><span class="p">:</span>
- <span class="k">if</span> <span class="n">col</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"seq_db_align"</span><span class="p">)</span> <span class="o">></span> <span class="o">-</span><span class="mi">1</span><span class="p">:</span>
- <span class="n">json_obj</span><span class="p">[</span><span class="n">col</span><span class="p">]</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">as_int</span><span class="p">(</span><span class="n">row</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">json_obj</span><span class="p">[</span><span class="n">col</span><span class="p">]</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">as_string</span><span class="p">(</span><span class="n">row</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
- <span class="n">chain_entity</span><span class="p">[</span><span class="n">target_entity_id</span><span class="p">][</span>
- <span class="s2">"ma_target_ref_db_details"</span>
- <span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">json_obj</span><span class="p">)</span>
-
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span>
- <span class="s2">"_entity_poly."</span><span class="p">,</span>
- <span class="p">[</span><span class="s2">"entity_id"</span><span class="p">,</span> <span class="s2">"pdbx_strand_id"</span><span class="p">,</span> <span class="s2">"pdbx_seq_one_letter_code"</span><span class="p">],</span>
- <span class="p">):</span>
- <span class="n">chain_entity</span><span class="p">[</span><span class="n">row</span><span class="p">[</span><span class="s2">"entity_id"</span><span class="p">]][</span><span class="s2">"olc"</span><span class="p">]</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">as_string</span><span class="p">(</span>
- <span class="n">row</span><span class="p">[</span><span class="s2">"pdbx_seq_one_letter_code"</span><span class="p">]</span>
- <span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">"</span><span class="se">\n</span><span class="s2">"</span><span class="p">,</span> <span class="s2">""</span><span class="p">)</span>
-
- <span class="k">return</span> <span class="n">chain_entity</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [14]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># do entity parsing</span>
-<span class="k">def</span> <span class="nf">_test_entity_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">):</span>
- <span class="c1"># get file for testing</span>
- <span class="n">doc</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
- <span class="n">block</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">sole_block</span><span class="p">()</span>
- <span class="c1"># reuse (updated!) code from ParseCIF</span>
- <span class="n">chain_entity</span> <span class="o">=</span> <span class="n">_get_chain_entity</span><span class="p">(</span><span class="n">block</span><span class="p">)</span>
- <span class="c1"># do it</span>
- <span class="n">item_strings</span> <span class="o">=</span> <span class="p">[]</span>
- <span class="k">for</span> <span class="n">ent</span> <span class="ow">in</span> <span class="n">chain_entity</span><span class="p">:</span>
- <span class="n">item_title</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">chain_entity</span><span class="p">[</span><span class="n">ent</span><span class="p">][</span><span class="s1">'pdbx_description'</span><span class="p">]</span><span class="si">}</span><span class="s2"> "</span> \
- <span class="sa">f</span><span class="s2">"(chains: </span><span class="si">{</span><span class="s1">', '</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">chain_entity</span><span class="p">[</span><span class="n">ent</span><span class="p">][</span><span class="s1">'asym_ids'</span><span class="p">])</span><span class="si">}</span><span class="s2">)"</span>
- <span class="n">db_links</span> <span class="o">=</span> <span class="p">[</span><span class="n">item_title</span><span class="p">]</span>
- <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">ref</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">chain_entity</span><span class="p">[</span><span class="n">ent</span><span class="p">][</span><span class="s2">"ma_target_ref_db_details"</span><span class="p">]):</span>
- <span class="k">if</span> <span class="n">ref</span><span class="p">[</span><span class="s2">"db_name"</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"UNP"</span><span class="p">:</span>
- <span class="n">link_text</span> <span class="o">=</span> <span class="n">ref</span><span class="p">[</span><span class="s1">'db_accession'</span><span class="p">]</span>
- <span class="n">link_url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"https://www.uniprot.org/uniprot/</span><span class="si">{</span><span class="n">ref</span><span class="p">[</span><span class="s1">'db_accession'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span>
- <span class="n">db_link</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"UniProt: </span><span class="si">{</span><span class="n">_make_url</span><span class="p">(</span><span class="n">link_text</span><span class="p">,</span> <span class="n">link_url</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">elif</span> <span class="n">ref</span><span class="p">[</span><span class="s2">"db_name"</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"OrthoDB"</span><span class="p">:</span>
- <span class="n">link_text</span> <span class="o">=</span> <span class="n">ref</span><span class="p">[</span><span class="s1">'db_accession'</span><span class="p">]</span>
- <span class="n">link_url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"https://www.orthodb.org/?query=</span><span class="si">{</span><span class="n">ref</span><span class="p">[</span><span class="s1">'db_accession'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span>
- <span class="n">db_link</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"OrthoDB: </span><span class="si">{</span><span class="n">_make_url</span><span class="p">(</span><span class="n">link_text</span><span class="p">,</span> <span class="n">link_url</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">elif</span> <span class="n">ref</span><span class="p">[</span><span class="s2">"db_name"</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"Other"</span> <span class="ow">and</span> <span class="n">ref</span><span class="p">[</span><span class="s2">"db_name_other_details"</span><span class="p">]:</span>
- <span class="n">db_link</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">ref</span><span class="p">[</span><span class="s1">'db_name_other_details'</span><span class="p">]</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">ref</span><span class="p">[</span><span class="s1">'db_accession'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">db_link</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">ref</span><span class="p">[</span><span class="s1">'db_name'</span><span class="p">]</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">ref</span><span class="p">[</span><span class="s1">'db_accession'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">if</span> <span class="n">ref</span><span class="p">[</span><span class="s1">'seq_db_align_begin'</span><span class="p">]</span> <span class="ow">and</span> <span class="n">ref</span><span class="p">[</span><span class="s1">'seq_db_align_end'</span><span class="p">]:</span>
- <span class="n">db_link</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">" </span><span class="si">{</span><span class="n">ref</span><span class="p">[</span><span class="s1">'seq_db_align_begin'</span><span class="p">]</span><span class="si">}</span><span class="s2">-</span><span class="si">{</span><span class="n">ref</span><span class="p">[</span><span class="s1">'seq_db_align_end'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">if</span> <span class="n">ref</span><span class="p">[</span><span class="s1">'organism_scientific'</span><span class="p">]:</span>
- <span class="n">db_link</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">"; </span><span class="si">{</span><span class="n">ref</span><span class="p">[</span><span class="s1">'organism_scientific'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span>
- <span class="n">db_links</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">db_link</span><span class="p">)</span>
- <span class="n">item_strings</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_make_multiline_text</span><span class="p">(</span><span class="n">db_links</span><span class="p">))</span>
- <span class="c1"># and show me...</span>
- <span class="k">if</span> <span class="n">item_strings</span><span class="p">:</span>
- <span class="n">list_top</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"The following molecular entities are in the model: (</span><span class="si">{</span><span class="n">test_file</span><span class="si">}</span><span class="s2">)"</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">_make_list</span><span class="p">(</span><span class="n">list_top</span><span class="p">,</span> <span class="n">item_strings</span><span class="p">))</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No molecular entities listed in </span><span class="si">{</span><span class="n">test_file</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">()</span>
-
-<span class="k">for</span> <span class="n">test_file</span> <span class="ow">in</span> <span class="n">test_files</span><span class="p">:</span>
- <span class="n">_test_entity_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
-</pre></div>
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-<pre>The following molecular entities are in the model: (modelcif_MA_test/c103531_g3_i1_unrelaxed_rank_1_model_3.cif)
-- Spongilla lacustris c103531_g3_i1 protein (chains: A)
-
-The following molecular entities are in the model: (modelcif_MA_test/AF-P38129-F1-model_v3.cif)
-- Transcription initiation factor TFIID subunit 5 (chains: A)
-UniProt: [P38129](https://www.uniprot.org/uniprot/P38129) 1-798; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
-
-The following molecular entities are in the model: (modelcif_MA_test/ma-bak-cepc-0001.cif)
-- TAF4 (chains: A)
-OrthoDB: [1294385_1:000f0d](https://www.orthodb.org/?query=1294385_1:000f0d) 1-388; Saccharomyces cerevisiae YJM1573
-UniProt: [A6ZM67](https://www.uniprot.org/uniprot/A6ZM67) 1-388; Saccharomyces cerevisiae (strain YJM789) (Baker's yeast)
-- TAF5 (chains: B)
-OrthoDB: [1294385_1:000051](https://www.orthodb.org/?query=1294385_1:000051) 1-798; Saccharomyces cerevisiae YJM1573
-UniProt: [P38129](https://www.uniprot.org/uniprot/P38129) 1-798; Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
-
-No molecular entities listed in modelcif_MA_test/1crn.cif
-
-The following molecular entities are in the model: (modelcif_MA_test/Tara_A0A1B0GTU1-O75152_unrelaxed_rank_1_model_1.cif)
-- Model of ZC3H11B (A0A1B0GTU1) (chains: A)
-UniProt: [A0A1B0GTU1](https://www.uniprot.org/uniprot/A0A1B0GTU1) 1-805; Homo sapiens (Human)
-- Model of ZC3H11A (O75152) (chains: B)
-UniProt: [O75152](https://www.uniprot.org/uniprot/O75152) 1-810; Homo sapiens (Human)
-
-The following molecular entities are in the model: (modelcif_MA_test/Var3D_I6XD65_1046.cif)
-- Model subunit of I6XD65 (chains: A)
-UniProt: [I6XD65](https://www.uniprot.org/uniprot/I6XD65) 1-185; Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
-- FE (II) ION (chains: B)
-- Pyrazinamide (chains: C)
-
-The following molecular entities are in the model: (modelcif_MA_test/Var3D_L7N665_1046.cif)
-- Model subunit of L7N665 (chains: A, B)
-UniProt: [L7N665](https://www.uniprot.org/uniprot/L7N665) 1-385; Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
-
-The following molecular entities are in the model: (modelcif_MA_test/Var3D_P9WIE5_3767.cif)
-- Model subunit of P9WIE5 (chains: A, B)
-UniProt: [P9WIE5](https://www.uniprot.org/uniprot/P9WIE5) 24-740; Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
-- Isoniazid (chains: C, D)
-- SODIUM ION (chains: E, F)
-- CHLORIDE ION (chains: G, H)
-- PROTOPORPHYRIN IX CONTAINING FE (chains: I, J)
-- GLYCEROL (chains: K, L, M, N, O, P)
-
-The following molecular entities are in the model: (modelcif_MA_test/ORNL_F0JBU9_9DELT.cif)
-- DND132RS05775 (chains: A)
-UniProt: [F0JBU9](https://www.uniprot.org/uniprot/F0JBU9) 1-123
-RefSeq: NC_016803 1-123
-
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># do SW parsing</span>
-<span class="k">def</span> <span class="nf">_test_sw_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">):</span>
- <span class="c1"># get file for testing</span>
- <span class="n">doc</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
- <span class="n">block</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">sole_block</span><span class="p">()</span>
- <span class="c1"># get author names for each citation</span>
- <span class="n">tmp</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_citation_author."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"citation_id"</span><span class="p">,</span> <span class="s2">"name"</span><span class="p">]):</span>
- <span class="n">cid</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
- <span class="n">name</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">cid</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">tmp</span><span class="p">:</span>
- <span class="n">tmp</span><span class="p">[</span><span class="n">cid</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s2">"name"</span><span class="p">:</span> <span class="n">name</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">","</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span> <span class="s2">"etal"</span><span class="p">:</span> <span class="s2">""</span><span class="p">}</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">tmp</span><span class="p">[</span><span class="n">cid</span><span class="p">][</span><span class="s2">"etal"</span><span class="p">]</span> <span class="o">=</span> <span class="s2">" et al."</span>
- <span class="n">cit_names</span> <span class="o">=</span> <span class="p">{</span><span class="n">cid</span><span class="p">:</span> <span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="s2">"name"</span><span class="p">]</span> <span class="o">+</span> <span class="n">d</span><span class="p">[</span><span class="s2">"etal"</span><span class="p">])</span> <span class="k">for</span> <span class="n">cid</span><span class="p">,</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">tmp</span><span class="o">.</span><span class="n">items</span><span class="p">()}</span>
- <span class="c1"># add year if available</span>
- <span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_citation."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"id"</span><span class="p">,</span> <span class="s2">"?year"</span><span class="p">])</span>
- <span class="k">if</span> <span class="n">table</span><span class="o">.</span><span class="n">has_column</span><span class="p">(</span><span class="mi">1</span><span class="p">):</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">:</span>
- <span class="n">cid</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
- <span class="n">year</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">cid</span> <span class="ow">in</span> <span class="n">cit_names</span> <span class="ow">and</span> <span class="n">year</span><span class="p">:</span>
- <span class="n">cit_names</span><span class="p">[</span><span class="n">cid</span><span class="p">]</span> <span class="o">+=</span> <span class="s2">" "</span> <span class="o">+</span> <span class="n">year</span>
- <span class="c1"># add URL if available</span>
- <span class="n">cit_urls</span> <span class="o">=</span> <span class="p">{}</span>
- <span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_citation."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"id"</span><span class="p">,</span> <span class="s2">"?pdbx_database_id_DOI"</span><span class="p">,</span> <span class="s2">"?pdbx_database_id_PubMed"</span><span class="p">])</span>
- <span class="n">formatters</span> <span class="o">=</span> <span class="p">[</span><span class="s2">"https://doi.org/</span><span class="si">%s</span><span class="s2">"</span><span class="p">,</span>
- <span class="s2">"https://www.ncbi.nlm.nih.gov/pubmed/</span><span class="si">%s</span><span class="s2">"</span><span class="p">]</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">:</span>
- <span class="n">cid</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
- <span class="c1"># add whichever URL we find first</span>
- <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">table</span><span class="o">.</span><span class="n">width</span><span class="p">()):</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
- <span class="n">cit_urls</span><span class="p">[</span><span class="n">cid</span><span class="p">]</span> <span class="o">=</span> <span class="n">formatters</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">%</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
- <span class="k">break</span>
- <span class="c1"># now map this to software</span>
- <span class="n">item_strings</span> <span class="o">=</span> <span class="p">[]</span>
- <span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_software."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"name"</span><span class="p">,</span> <span class="s2">"?location"</span><span class="p">,</span> <span class="s2">"?version"</span><span class="p">,</span> <span class="s2">"?citation_id"</span><span class="p">])</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">:</span>
- <span class="n">sw_name</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">1</span><span class="p">):</span>
- <span class="n">item</span> <span class="o">=</span> <span class="n">_make_url</span><span class="p">(</span><span class="n">sw_name</span><span class="p">,</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">=</span> <span class="n">sw_name</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">2</span><span class="p">):</span>
- <span class="n">item</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">" (</span><span class="si">{</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span><span class="si">}</span><span class="s2">)"</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="ow">in</span> <span class="n">cit_names</span><span class="p">:</span>
- <span class="n">cid</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">cid</span> <span class="ow">in</span> <span class="n">cit_urls</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">" (</span><span class="si">{</span><span class="n">_make_url</span><span class="p">(</span><span class="n">cit_names</span><span class="p">[</span><span class="n">cid</span><span class="p">],</span> <span class="n">cit_urls</span><span class="p">[</span><span class="n">cid</span><span class="p">])</span><span class="si">}</span><span class="s2">)"</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">" (</span><span class="si">{</span><span class="n">cit_names</span><span class="p">[</span><span class="n">cid</span><span class="p">]</span><span class="si">}</span><span class="s2">)"</span>
- <span class="n">item_strings</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
- <span class="c1"># and show me...</span>
- <span class="k">if</span> <span class="n">item_strings</span><span class="p">:</span>
- <span class="n">list_top</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"The following software was used: (</span><span class="si">{</span><span class="n">test_file</span><span class="si">}</span><span class="s2">)"</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">_make_list</span><span class="p">(</span><span class="n">list_top</span><span class="p">,</span> <span class="n">item_strings</span><span class="p">))</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No software was listed for </span><span class="si">{</span><span class="n">test_file</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">()</span>
-
-<span class="k">for</span> <span class="n">test_file</span> <span class="ow">in</span> <span class="n">test_files</span><span class="p">:</span>
- <span class="n">_test_sw_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
-</pre></div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [182]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># do ref. DB parsing</span>
-<span class="k">def</span> <span class="nf">_test_ref_db_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">):</span>
- <span class="c1"># get file for testing</span>
- <span class="n">doc</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
- <span class="n">block</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">sole_block</span><span class="p">()</span>
- <span class="c1"># look for DBs with version or release date</span>
- <span class="n">item_strings</span> <span class="o">=</span> <span class="p">[]</span>
- <span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_ma_data_ref_db."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"name"</span><span class="p">,</span> <span class="s2">"?version"</span><span class="p">,</span> <span class="s2">"?release_date"</span><span class="p">])</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span>
- <span class="c1"># add whichever version we find first</span>
- <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">3</span><span class="p">):</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
- <span class="n">item</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">" (</span><span class="si">{</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span><span class="si">}</span><span class="s2">)"</span>
- <span class="k">break</span>
- <span class="n">item_strings</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
- <span class="c1"># and show me...</span>
- <span class="k">if</span> <span class="n">item_strings</span><span class="p">:</span>
- <span class="n">list_top</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"The following reference databases were used: (</span><span class="si">{</span><span class="n">test_file</span><span class="si">}</span><span class="s2">)"</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">_make_list</span><span class="p">(</span><span class="n">list_top</span><span class="p">,</span> <span class="n">item_strings</span><span class="p">))</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No reference databases were listed for </span><span class="si">{</span><span class="n">test_file</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">()</span>
-
-<span class="k">for</span> <span class="n">test_file</span> <span class="ow">in</span> <span class="n">test_files</span><span class="p">:</span>
- <span class="n">_test_ref_db_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
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-<pre>The following reference databases were used: (modelcif_MA_test/c103531_g3_i1_unrelaxed_rank_1_model_3.cif)
-- UniRef30 (2021_03)
-- ColabFold DB (2021_08)
-
-No reference databases were listed for modelcif_MA_test/AF-P38129-F1-model_v3.cif
-
-No reference databases were listed for modelcif_MA_test/ma-bak-cepc-0001.cif
-
-No reference databases were listed for modelcif_MA_test/1crn.cif
-
-No reference databases were listed for modelcif_MA_test/Tara_A0A1B0GTU1-O75152_unrelaxed_rank_1_model_1.cif
-
-No reference databases were listed for modelcif_MA_test/Var3D_I6XD65_1046.cif
-
-The following reference databases were used: (modelcif_MA_test/Var3D_L7N665_1046.cif)
-- BFD (6a634dc6eb105c2e9b4cba7bbae93412)
-- MGnify (2018_12)
-- Uniclust30 (2018_08)
-- Swiss-Prot (2021_03)
-- TrEMBL (2021_03)
-- UniRef90 (2021_03)
-
-No reference databases were listed for modelcif_MA_test/Var3D_P9WIE5_3767.cif
-
-No reference databases were listed for modelcif_MA_test/ORNL_F0JBU9_9DELT.cif
-
-</pre>
-</div>
-</div>
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-</div>
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-</div>
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-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
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-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [47]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># do template parsing</span>
-<span class="k">def</span> <span class="nf">_test_tpl_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">):</span>
- <span class="c1"># get file for testing</span>
- <span class="n">doc</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
- <span class="n">block</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">sole_block</span><span class="p">()</span>
- <span class="c1"># collect info per tpl-id</span>
- <span class="n">tpl_dict</span> <span class="o">=</span> <span class="p">{}</span> <span class="c1"># keyed on template_id</span>
- <span class="c1"># fetch main info</span>
- <span class="n">cols</span> <span class="o">=</span> <span class="p">[</span><span class="s2">"template_id"</span><span class="p">,</span> <span class="s2">"target_asym_id"</span><span class="p">,</span> <span class="s2">"template_auth_asym_id"</span><span class="p">,</span>
- <span class="s2">"?template_label_asym_id"</span><span class="p">]</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_ma_template_details."</span><span class="p">,</span> <span class="n">cols</span><span class="p">):</span>
- <span class="n">tid</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
- <span class="n">tpl_dict</span><span class="p">[</span><span class="n">tid</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
- <span class="s2">"trg_asym_id"</span><span class="p">:</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">1</span><span class="p">),</span>
- <span class="s2">"tpl_auth_asym_id"</span><span class="p">:</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span>
- <span class="p">}</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">3</span><span class="p">):</span>
- <span class="n">tpl_dict</span><span class="p">[</span><span class="n">tid</span><span class="p">][</span><span class="s2">"tpl_label_asym_id"</span><span class="p">]</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span>
- <span class="c1"># add ref DBs</span>
- <span class="n">cols</span> <span class="o">=</span> <span class="p">[</span><span class="s2">"template_id"</span><span class="p">,</span> <span class="s2">"db_accession_code"</span><span class="p">,</span> <span class="s2">"db_name"</span><span class="p">,</span>
- <span class="s2">"?db_name_other_details"</span><span class="p">]</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_ma_template_ref_db_details."</span><span class="p">,</span> <span class="n">cols</span><span class="p">):</span>
- <span class="n">tid</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">tid</span> <span class="ow">in</span> <span class="n">tpl_dict</span><span class="p">:</span>
- <span class="n">tpl_dict</span><span class="p">[</span><span class="n">tid</span><span class="p">][</span><span class="s2">"db_acc"</span><span class="p">]</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span> <span class="o">==</span> <span class="s2">"Other"</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">3</span><span class="p">):</span>
- <span class="n">tpl_dict</span><span class="p">[</span><span class="n">tid</span><span class="p">][</span><span class="s2">"db_name"</span><span class="p">]</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">tpl_dict</span><span class="p">[</span><span class="n">tid</span><span class="p">][</span><span class="s2">"db_name"</span><span class="p">]</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span>
- <span class="c1"># add info for small molecules</span>
- <span class="n">cols</span> <span class="o">=</span> <span class="p">[</span><span class="s2">"template_id"</span><span class="p">,</span> <span class="s2">"?comp_id"</span><span class="p">,</span> <span class="s2">"?details"</span><span class="p">]</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_ma_template_non_poly."</span><span class="p">,</span> <span class="n">cols</span><span class="p">):</span>
- <span class="n">tid</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">tid</span> <span class="ow">in</span> <span class="n">tpl_dict</span><span class="p">:</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">1</span><span class="p">):</span>
- <span class="n">tpl_dict</span><span class="p">[</span><span class="n">tid</span><span class="p">][</span><span class="s2">"non_poly_comp_id"</span><span class="p">]</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">2</span><span class="p">):</span>
- <span class="n">tpl_dict</span><span class="p">[</span><span class="n">tid</span><span class="p">][</span><span class="s2">"non_poly_details"</span><span class="p">]</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span>
- <span class="c1"># aggregate per template for diplaying</span>
- <span class="n">tpl_td</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
- <span class="k">for</span> <span class="n">tpl</span> <span class="ow">in</span> <span class="n">tpl_dict</span><span class="o">.</span><span class="n">values</span><span class="p">():</span>
- <span class="n">did</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'db_name'</span><span class="p">]</span><span class="si">}</span><span class="s2">-</span><span class="si">{</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'db_acc'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">if</span> <span class="n">did</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">tpl_td</span><span class="p">:</span>
- <span class="k">if</span> <span class="n">tpl</span><span class="p">[</span><span class="s1">'db_name'</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"PDB"</span><span class="p">:</span>
- <span class="n">link_url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"http://dx.doi.org/10.2210/pdb</span><span class="si">{</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'db_acc'</span><span class="p">]</span><span class="si">}</span><span class="s2">/pdb"</span>
- <span class="k">elif</span> <span class="n">tpl</span><span class="p">[</span><span class="s1">'db_name'</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"PubChem"</span><span class="p">:</span>
- <span class="n">link_url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"https://pubchem.ncbi.nlm.nih.gov/compound/</span><span class="si">{</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'db_acc'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">link_url</span> <span class="o">=</span> <span class="kc">None</span>
- <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"URLs for </span><span class="si">{</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'db_name'</span><span class="p">]</span><span class="si">}</span><span class="s2"> NOT SUPPORTED YET"</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">link_url</span><span class="p">:</span>
- <span class="n">tpl_text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'db_name'</span><span class="p">]</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">_make_url</span><span class="p">(</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'db_acc'</span><span class="p">],</span> <span class="n">link_url</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">tpl_text</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'db_name'</span><span class="p">]</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'db_acc'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span>
- <span class="n">tpl_td</span><span class="p">[</span><span class="n">did</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
- <span class="s2">"tpl_text"</span><span class="p">:</span> <span class="n">tpl_text</span><span class="p">,</span>
- <span class="s2">"tpl_chains_label"</span><span class="p">:</span> <span class="p">[],</span>
- <span class="s2">"tpl_chains_auth"</span><span class="p">:</span> <span class="p">[],</span>
- <span class="s2">"tpl_chains_all_label"</span><span class="p">:</span> <span class="kc">True</span><span class="p">,</span>
- <span class="s2">"tpl_non_poly_ids"</span><span class="p">:</span> <span class="p">[]</span>
- <span class="p">}</span>
- <span class="c1"># collect chain names</span>
- <span class="k">if</span> <span class="s2">"tpl_label_asym_id"</span> <span class="ow">in</span> <span class="n">tpl</span><span class="p">:</span>
- <span class="c1"># if here it is guaranteed to be non-empty</span>
- <span class="n">tpl_td</span><span class="p">[</span><span class="n">did</span><span class="p">][</span><span class="s2">"tpl_chains_label"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tpl</span><span class="p">[</span><span class="s2">"tpl_label_asym_id"</span><span class="p">])</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="c1"># if any missing, we set all to False and fall back to auth</span>
- <span class="n">tpl_td</span><span class="p">[</span><span class="n">did</span><span class="p">][</span><span class="s2">"tpl_chains_all_label"</span><span class="p">]</span> <span class="o">=</span> <span class="kc">False</span>
- <span class="k">if</span> <span class="n">tpl</span><span class="p">[</span><span class="s2">"tpl_auth_asym_id"</span><span class="p">]:</span>
- <span class="c1"># only add non empty ones</span>
- <span class="n">tpl_td</span><span class="p">[</span><span class="n">did</span><span class="p">][</span><span class="s2">"tpl_chains_auth"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tpl</span><span class="p">[</span><span class="s2">"tpl_auth_asym_id"</span><span class="p">])</span>
- <span class="c1"># collect info on non poly if available (prefer short comp. ID)</span>
- <span class="k">if</span> <span class="s2">"non_poly_comp_id"</span> <span class="ow">in</span> <span class="n">tpl</span><span class="p">:</span>
- <span class="n">tpl_td</span><span class="p">[</span><span class="n">did</span><span class="p">][</span><span class="s2">"tpl_non_poly_ids"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tpl</span><span class="p">[</span><span class="s2">"non_poly_comp_id"</span><span class="p">])</span>
- <span class="k">elif</span> <span class="s2">"non_poly_details"</span> <span class="ow">in</span> <span class="n">tpl</span><span class="p">:</span>
- <span class="n">tpl_td</span><span class="p">[</span><span class="n">did</span><span class="p">][</span><span class="s2">"tpl_non_poly_ids"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tpl</span><span class="p">[</span><span class="s2">"non_poly_details"</span><span class="p">])</span>
- <span class="c1"># turn into text</span>
- <span class="n">item_strings</span> <span class="o">=</span> <span class="p">[]</span>
- <span class="k">for</span> <span class="n">tpl</span> <span class="ow">in</span> <span class="n">tpl_td</span><span class="o">.</span><span class="n">values</span><span class="p">():</span>
- <span class="n">item</span> <span class="o">=</span> <span class="n">tpl</span><span class="p">[</span><span class="s2">"tpl_text"</span><span class="p">]</span>
- <span class="k">if</span> <span class="n">tpl</span><span class="p">[</span><span class="s2">"tpl_chains_all_label"</span><span class="p">]</span> <span class="ow">and</span> <span class="n">tpl</span><span class="p">[</span><span class="s2">"tpl_chains_label"</span><span class="p">]:</span>
- <span class="n">chain_ids</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'tpl_chains_label'</span><span class="p">]))</span>
- <span class="n">item</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">"; chains (label_asym_id): </span><span class="si">{</span><span class="s1">', '</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">chain_ids</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">elif</span> <span class="n">tpl</span><span class="p">[</span><span class="s2">"tpl_chains_auth"</span><span class="p">]:</span>
- <span class="n">chain_ids</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'tpl_chains_auth'</span><span class="p">]))</span>
- <span class="n">item</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">"; chains (auth_asym_id): </span><span class="si">{</span><span class="s1">', '</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">chain_ids</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">if</span> <span class="n">tpl</span><span class="p">[</span><span class="s2">"tpl_non_poly_ids"</span><span class="p">]:</span>
- <span class="n">np_ids</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">tpl</span><span class="p">[</span><span class="s1">'tpl_non_poly_ids'</span><span class="p">]))</span>
- <span class="n">item</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">"; non-polymers: </span><span class="si">{</span><span class="s1">', '</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">np_ids</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span>
- <span class="n">item_strings</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
- <span class="c1"># and show me...</span>
- <span class="k">if</span> <span class="n">item_strings</span><span class="p">:</span>
- <span class="n">list_top</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"The following templates were used: (</span><span class="si">{</span><span class="n">test_file</span><span class="si">}</span><span class="s2">)"</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">_make_list</span><span class="p">(</span><span class="n">list_top</span><span class="p">,</span> <span class="n">item_strings</span><span class="p">))</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No templates were listed for </span><span class="si">{</span><span class="n">test_file</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">()</span>
-
-<span class="k">for</span> <span class="n">test_file</span> <span class="ow">in</span> <span class="n">test_files</span><span class="p">:</span>
- <span class="n">_test_tpl_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
-</pre></div>
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-<pre>No templates were listed for modelcif_MA_test/c103531_g3_i1_unrelaxed_rank_1_model_3.cif
-
-The following templates were used: (modelcif_MA_test/AF-P38129-F1-model_v3.cif)
-- PDB: [6TBM](http://dx.doi.org/10.2210/pdb6TBM/pdb); chains (auth_asym_id): G
-- PDB: [6TB4](http://dx.doi.org/10.2210/pdb6TB4/pdb); chains (auth_asym_id): G
-- PDB: [6F3T](http://dx.doi.org/10.2210/pdb6F3T/pdb); chains (auth_asym_id): A
-- PDB: [6MZC](http://dx.doi.org/10.2210/pdb6MZC/pdb); chains (auth_asym_id): G
-
-No templates were listed for modelcif_MA_test/ma-bak-cepc-0001.cif
-
-No templates were listed for modelcif_MA_test/1crn.cif
-
-No templates were listed for modelcif_MA_test/Tara_A0A1B0GTU1-O75152_unrelaxed_rank_1_model_1.cif
-
-The following templates were used: (modelcif_MA_test/Var3D_I6XD65_1046.cif)
-- PDB: [3PL1](http://dx.doi.org/10.2210/pdb3PL1/pdb); chains (label_asym_id): A, B; non-polymers: FE2
-- PubChem: [1046](https://pubchem.ncbi.nlm.nih.gov/compound/1046); non-polymers: PZA
-
-No templates were listed for modelcif_MA_test/Var3D_L7N665_1046.cif
-
-The following templates were used: (modelcif_MA_test/Var3D_P9WIE5_3767.cif)
-- PDB: [1SJ2](http://dx.doi.org/10.2210/pdb1SJ2/pdb); chains (label_asym_id): A, B, C, D, E, F, G, H, I, J; non-polymers: GOL, HEM
-- PDB: [6CDQ](http://dx.doi.org/10.2210/pdb6CDQ/pdb); chains (label_asym_id): D, E, K, M, N, S; non-polymers: CL, NA, NIZ
-
-No templates were listed for modelcif_MA_test/ORNL_F0JBU9_9DELT.cif
-
-</pre>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [183]:</div>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># do protocol steps parsing</span>
-<span class="k">def</span> <span class="nf">_test_protocol_steps_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">):</span>
- <span class="c1"># get file for testing</span>
- <span class="n">doc</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
- <span class="n">block</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">sole_block</span><span class="p">()</span>
- <span class="c1"># do it</span>
- <span class="n">item_strings</span> <span class="o">=</span> <span class="p">[]</span>
- <span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_ma_protocol_step."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"step_id"</span><span class="p">,</span> <span class="s2">"method_type"</span><span class="p">,</span> <span class="s2">"?details"</span><span class="p">])</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"Step </span><span class="si">{</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span><span class="si">}</span><span class="s2"> - </span><span class="si">{</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">2</span><span class="p">):</span>
- <span class="n">item</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">" : </span><span class="si">{</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span>
- <span class="n">item_strings</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
- <span class="c1"># and show me...</span>
- <span class="k">if</span> <span class="n">item_strings</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"(</span><span class="si">{</span><span class="n">test_file</span><span class="si">}</span><span class="s2">)"</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">_make_multiline_text</span><span class="p">(</span><span class="n">item_strings</span><span class="p">))</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No protocol steps listed in </span><span class="si">{</span><span class="n">test_file</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">()</span>
-
-<span class="k">for</span> <span class="n">test_file</span> <span class="ow">in</span> <span class="n">test_files</span><span class="p">:</span>
- <span class="n">_test_protocol_steps_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
-
-<span class="c1"># NOTE: compared with code in ParseCIF (8.8.22): block.find used without optional '?' there</span>
-<span class="c1"># -> i.e. code above works also if it is lacking details</span>
-</pre></div>
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-<pre>(modelcif_MA_test/c103531_g3_i1_unrelaxed_rank_1_model_3.cif)
-Step 1 - modeling : Model generated using ColabFold v1.2.0 with AlphaFold producing 5 models with 3 recycles each without model relaxation without templates ranked by pLDDT starting from an MSA from MMseqs2 (UniRef+Environmental)
-
-(modelcif_MA_test/AF-P38129-F1-model_v3.cif)
-Step 1 - coevolution MSA
-Step 2 - template search
-Step 3 - modeling
-
-(modelcif_MA_test/ma-bak-cepc-0001.cif)
-Step 1 - coevolution MSA : Create paired MSAs for the dimers
-Step 2 - modeling : Model using AlphaFold with a 200 residue gap between the two chains
-
-No protocol steps listed in modelcif_MA_test/1crn.cif
-
-(modelcif_MA_test/Tara_A0A1B0GTU1-O75152_unrelaxed_rank_1_model_1.cif)
-Step 1 - modeling : Model using AlphaFold-Multimer (AlphaFold v2.2.0), without amber relaxation and producing 5 models with up to 3 recycles each, starting from paired and unparied MSAs for the dimers using MMseqs2.
-Step 2 - model selection : Select best model, which is either the top-ranked model as determined by the ColabFold pipeline (iptmscore*0.8+ptmscore*0.2), or else the model with best congruence with crosslinks reported in the related study.
-
-(modelcif_MA_test/Var3D_I6XD65_1046.cif)
-Step 1 - modeling : Docking of ligand PZA in structure
-
-(modelcif_MA_test/Var3D_L7N665_1046.cif)
-Step 1 - modeling : Modelled the sequence of L7N665 with AlphaFold-Multimer as a homo-2-mer
-
-(modelcif_MA_test/Var3D_P9WIE5_3767.cif)
-Step 1 - modeling : transferred ligand NIZ from experimental structure 6cdq into protein structure
-
-(modelcif_MA_test/ORNL_F0JBU9_9DELT.cif)
-Step 1 - modeling
-Step 2 - model selection
-
-</pre>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [184]:</div>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">_fetch_qa_data</span><span class="p">(</span><span class="n">block</span><span class="p">):</span>
- <span class="c1"># fetch main info</span>
- <span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_ma_qa_metric."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"id"</span><span class="p">,</span> <span class="s2">"name"</span><span class="p">,</span> <span class="s2">"mode"</span><span class="p">,</span> <span class="s2">"type"</span><span class="p">])</span>
- <span class="n">qa_dict</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span> <span class="c1"># for easy access: keyed on "id" and rest as dict</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">:</span>
- <span class="n">d</span> <span class="o">=</span> <span class="p">{</span><span class="n">key</span><span class="p">:</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="n">idx</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">([</span><span class="s2">"name"</span><span class="p">,</span> <span class="s2">"mode"</span><span class="p">,</span> <span class="s2">"type"</span><span class="p">])}</span>
- <span class="n">qa_dict</span><span class="p">[</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)]</span> <span class="o">=</span> <span class="n">d</span>
- <span class="c1"># fetch global scores</span>
- <span class="n">qa_global</span> <span class="o">=</span> <span class="p">[]</span>
- <span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_ma_qa_metric_global."</span><span class="p">,</span> <span class="p">[</span><span class="s2">"metric_id"</span><span class="p">,</span> <span class="s2">"metric_value"</span><span class="p">])</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">:</span>
- <span class="n">metric_id</span> <span class="o">=</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
- <span class="n">metric_value</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">as_number</span><span class="p">(</span><span class="n">row</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span>
- <span class="k">if</span> <span class="n">metric_id</span> <span class="ow">in</span> <span class="n">qa_dict</span><span class="p">:</span>
- <span class="k">assert</span> <span class="n">qa_dict</span><span class="p">[</span><span class="n">metric_id</span><span class="p">][</span><span class="s2">"mode"</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"global"</span>
- <span class="n">qa_dict</span><span class="p">[</span><span class="n">metric_id</span><span class="p">][</span><span class="s2">"value"</span><span class="p">]</span> <span class="o">=</span> <span class="n">metric_value</span>
- <span class="n">qa_global</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">qa_dict</span><span class="p">[</span><span class="n">metric_id</span><span class="p">])</span>
- <span class="c1"># fetch local scores</span>
- <span class="n">qa_local</span> <span class="o">=</span> <span class="p">[</span><span class="n">d</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">qa_dict</span><span class="o">.</span><span class="n">values</span><span class="p">()</span> <span class="k">if</span> <span class="n">d</span><span class="p">[</span><span class="s2">"mode"</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"local"</span><span class="p">]</span>
- <span class="n">qa_local_pairwise</span> <span class="o">=</span> <span class="p">[</span><span class="n">d</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">qa_dict</span><span class="o">.</span><span class="n">values</span><span class="p">()</span> <span class="k">if</span> <span class="n">d</span><span class="p">[</span><span class="s2">"mode"</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"local-pairwise"</span><span class="p">]</span>
- <span class="k">return</span> <span class="n">qa_global</span><span class="p">,</span> <span class="n">qa_local</span><span class="p">,</span> <span class="n">qa_local_pairwise</span>
-
-<span class="n">_fetch_qa_data</span><span class="p">(</span><span class="n">block</span><span class="p">)</span>
-</pre></div>
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-<pre>([{'name': 'pLDDT', 'mode': 'global', 'type': 'pLDDT', 'value': 88.312},
- {'name': 'pTM', 'mode': 'global', 'type': 'pTM', 'value': 0.78}],
- [{'name': 'pLDDT', 'mode': 'local', 'type': 'pLDDT'}],
- [{'name': 'PAE', 'mode': 'local-pairwise', 'type': 'PAE'}])</pre>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># do parsing of QA part and acc. data</span>
-<span class="k">def</span> <span class="nf">_test_qa_acc_data_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">):</span>
- <span class="c1"># get file for testing</span>
- <span class="n">doc</span> <span class="o">=</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
- <span class="n">block</span> <span class="o">=</span> <span class="n">doc</span><span class="o">.</span><span class="n">sole_block</span><span class="p">()</span>
- <span class="c1"># get QA part (can reuse if already used elsewhere)</span>
- <span class="n">qa_global</span><span class="p">,</span> <span class="n">qa_local</span><span class="p">,</span> <span class="n">qa_local_pairwise</span> <span class="o">=</span> <span class="n">_fetch_qa_data</span><span class="p">(</span><span class="n">block</span><span class="p">)</span>
- <span class="c1"># parse accompanying data</span>
- <span class="n">file_contents</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find_values</span><span class="p">(</span><span class="s2">"_ma_entry_associated_files.file_content"</span><span class="p">)</span>
- <span class="n">has_single_zip_file</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">file_contents</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> \
- <span class="n">file_contents</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span> <span class="o">==</span> <span class="s2">"archive with multiple files"</span>
- <span class="k">if</span> <span class="n">has_single_zip_file</span><span class="p">:</span>
- <span class="c1"># override with data from other block</span>
- <span class="n">file_contents</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find_values</span><span class="p">(</span><span class="s2">"_ma_associated_archive_file_details.file_content"</span><span class="p">)</span>
- <span class="n">has_loc_pw_in_acc</span> <span class="o">=</span> <span class="nb">any</span><span class="p">(</span><span class="kc">True</span> <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">file_contents</span> \
- <span class="k">if</span> <span class="n">gemmi</span><span class="o">.</span><span class="n">cif</span><span class="o">.</span><span class="n">as_string</span><span class="p">(</span><span class="n">v</span><span class="p">)</span> <span class="o">==</span> <span class="s2">"local pairwise QA scores"</span><span class="p">)</span>
- <span class="c1"># put together text</span>
- <span class="n">text</span> <span class="o">=</span> <span class="s2">""</span>
- <span class="c1"># text for QA</span>
- <span class="n">item</span> <span class="o">=</span> <span class="s2">""</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">qa_global</span><span class="p">)</span> <span class="o">></span> <span class="mi">1</span><span class="p">:</span>
- <span class="n">score_strings</span> <span class="o">=</span> <span class="p">[</span><span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">v</span><span class="p">[</span><span class="s1">'name'</span><span class="p">]</span><span class="si">}</span><span class="s2"> of </span><span class="si">{</span><span class="n">v</span><span class="p">[</span><span class="s1">'value'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span> <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">qa_global</span><span class="p">]</span>
- <span class="n">item</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"The model has the following global model confidence scores:"</span> \
- <span class="sa">f</span><span class="s2">" </span><span class="si">{</span><span class="s1">', '</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">score_strings</span><span class="p">)</span><span class="si">}</span><span class="s2">."</span>
- <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">qa_global</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"The model has a global model confidence score "</span> \
- <span class="sa">f</span><span class="s2">"(</span><span class="si">{</span><span class="n">qa_global</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="s1">'name'</span><span class="p">]</span><span class="si">}</span><span class="s2">) of </span><span class="si">{</span><span class="n">qa_global</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="s1">'value'</span><span class="p">]</span><span class="si">}</span><span class="s2">."</span>
- <span class="k">if</span> <span class="n">item</span><span class="p">:</span>
- <span class="n">text</span> <span class="o">+=</span> <span class="n">_make_paragraph</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
- <span class="c1"># lots of options for local QA string</span>
- <span class="n">item</span> <span class="o">=</span> <span class="s2">""</span>
- <span class="n">qa_local_names</span> <span class="o">=</span> <span class="s2">", "</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">v</span><span class="p">[</span><span class="s2">"name"</span><span class="p">]</span> <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">qa_local</span><span class="p">])</span>
- <span class="n">qa_loc_pw_names</span> <span class="o">=</span> <span class="s2">", "</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">v</span><span class="p">[</span><span class="s2">"name"</span><span class="p">]</span> <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">qa_local_pairwise</span><span class="p">])</span>
- <span class="k">if</span> <span class="n">qa_local_names</span> <span class="ow">and</span> <span class="n">qa_loc_pw_names</span> <span class="ow">and</span> <span class="n">has_loc_pw_in_acc</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"Local per-residue model confidence scores (</span><span class="si">{</span><span class="n">qa_local_names</span><span class="si">}</span><span class="s2">) "</span> \
- <span class="sa">f</span><span class="s2">"are available in the model mmCIF file "</span> \
- <span class="sa">f</span><span class="s2">"and local per-residue-pair scores (</span><span class="si">{</span><span class="n">qa_loc_pw_names</span><span class="si">}</span><span class="s2">) "</span> \
- <span class="sa">f</span><span class="s2">"in the accompanying data download."</span>
- <span class="k">elif</span> <span class="n">qa_local_names</span> <span class="ow">and</span> <span class="n">qa_loc_pw_names</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">has_loc_pw_in_acc</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"Local per-residue model confidence scores (</span><span class="si">{</span><span class="n">qa_local_names</span><span class="si">}</span><span class="s2">) "</span> \
- <span class="sa">f</span><span class="s2">"and local per-residue-pair scores (</span><span class="si">{</span><span class="n">qa_loc_pw_names</span><span class="si">}</span><span class="s2">) "</span> \
- <span class="sa">f</span><span class="s2">"are available in the model mmCIF file."</span>
- <span class="k">elif</span> <span class="n">qa_local_names</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">qa_loc_pw_names</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"Local per-residue model confidence scores (</span><span class="si">{</span><span class="n">qa_local_names</span><span class="si">}</span><span class="s2">) "</span> \
- <span class="sa">f</span><span class="s2">"are available in the model mmCIF file."</span>
- <span class="k">elif</span> <span class="ow">not</span> <span class="n">qa_local_names</span> <span class="ow">and</span> <span class="n">qa_loc_pw_names</span> <span class="ow">and</span> <span class="n">has_loc_pw_in_acc</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"Local per-residue-pair model confidence scores (</span><span class="si">{</span><span class="n">qa_loc_pw_names</span><span class="si">}</span><span class="s2">) "</span> \
- <span class="sa">f</span><span class="s2">"are available in the accompanying data download."</span>
- <span class="k">elif</span> <span class="ow">not</span> <span class="n">qa_local_names</span> <span class="ow">and</span> <span class="n">qa_loc_pw_names</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">has_loc_pw_in_acc</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"Local per-residue-pair model confidence scores (</span><span class="si">{</span><span class="n">qa_loc_pw_names</span><span class="si">}</span><span class="s2">) "</span> \
- <span class="sa">f</span><span class="s2">"are available in the model mmCIF file."</span>
- <span class="k">if</span> <span class="n">item</span><span class="p">:</span>
- <span class="n">text</span> <span class="o">+=</span> <span class="n">_make_paragraph</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
- <span class="c1"># list files in accompanying data (if any)</span>
- <span class="k">if</span> <span class="n">has_single_zip_file</span><span class="p">:</span>
- <span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_ma_associated_archive_file_details."</span><span class="p">,</span>
- <span class="p">[</span><span class="s2">"file_path"</span><span class="p">,</span> <span class="s2">"?file_content"</span><span class="p">,</span> <span class="s2">"?description"</span><span class="p">])</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="c1"># NOTE: aimed to work legacy-style for Baker-models but should be obsoleted</span>
- <span class="c1"># -> can replace below with "table = None" in future</span>
- <span class="n">table</span> <span class="o">=</span> <span class="n">block</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">"_ma_entry_associated_files."</span><span class="p">,</span>
- <span class="p">[</span><span class="s2">"file_url"</span><span class="p">,</span> <span class="s2">"?file_content"</span><span class="p">,</span> <span class="s2">"?details"</span><span class="p">])</span>
- <span class="k">if</span> <span class="n">table</span><span class="p">:</span>
- <span class="n">list_top</span> <span class="o">=</span> <span class="s2">"Files in accompanying data:"</span>
- <span class="n">list_items</span> <span class="o">=</span> <span class="p">[]</span>
- <span class="k">for</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">table</span><span class="p">:</span>
- <span class="n">item</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">1</span><span class="p">):</span>
- <span class="n">item</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">" (</span><span class="si">{</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span><span class="si">}</span><span class="s2">)"</span>
- <span class="k">if</span> <span class="n">row</span><span class="o">.</span><span class="n">has</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span> <span class="ow">and</span> <span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">2</span><span class="p">):</span>
- <span class="n">item</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">": </span><span class="si">{</span><span class="n">row</span><span class="o">.</span><span class="n">str</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span><span class="si">}</span><span class="s2">"</span>
- <span class="n">list_items</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
- <span class="n">text</span> <span class="o">+=</span> <span class="n">_make_paragraph</span><span class="p">(</span><span class="n">_make_list</span><span class="p">(</span><span class="n">list_top</span><span class="p">,</span> <span class="n">list_items</span><span class="p">))</span>
- <span class="c1"># conclude with standard pointer to ModelCIF file</span>
- <span class="n">model_cif_link</span> <span class="o">=</span> <span class="n">_make_url</span><span class="p">(</span>
- <span class="s2">"ModelCIF format"</span><span class="p">,</span>
- <span class="s2">"https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/"</span>
- <span class="p">)</span>
- <span class="n">text</span> <span class="o">+=</span> <span class="n">_make_paragraph</span><span class="p">(</span>
- <span class="sa">f</span><span class="s2">"Full details are available in </span><span class="si">{</span><span class="n">model_cif_link</span><span class="si">}</span><span class="s2">"</span> \
- <span class="sa">f</span><span class="s2">"in the model mmCIF file."</span>
- <span class="p">)</span>
- <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"(</span><span class="si">{</span><span class="n">test_file</span><span class="si">}</span><span class="s2">)"</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">text</span><span class="p">)</span>
-
-<span class="k">for</span> <span class="n">test_file</span> <span class="ow">in</span> <span class="n">test_files</span><span class="p">:</span>
- <span class="n">_test_qa_acc_data_parsing</span><span class="p">(</span><span class="n">test_file</span><span class="p">)</span>
-</pre></div>
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-<pre>(modelcif_MA_test/c103531_g3_i1_unrelaxed_rank_1_model_3.cif)
-The model has the following global model confidence scores: pLDDT of 88.312, pTM of 0.78.
-
-Local per-residue model confidence scores (pLDDT) are available in the model mmCIF file and local per-residue-pair scores (PAE) in the accompanying data download.
-
-Files in accompanying data:
-- c103531_g3_i1_unrelaxed_rank_1_model_3_local_pairwise_qa.cif (local pairwise QA scores): Predicted aligned error
-
-Full details are available in [ModelCIF format](https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/)in the model mmCIF file.
-
-
-(modelcif_MA_test/AF-P38129-F1-model_v3.cif)
-The model has a global model confidence score (pLDDT) of 73.91.
-
-Local per-residue model confidence scores (pLDDT) are available in the model mmCIF file.
-
-Full details are available in [ModelCIF format](https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/)in the model mmCIF file.
-
-
-(modelcif_MA_test/ma-bak-cepc-0001.cif)
-The model has a global model confidence score (pLDDT) of 67.43.
-
-Local per-residue model confidence scores (pLDDT) are available in the model mmCIF file and local per-residue-pair scores (PAE, contact probability) in the accompanying data download.
-
-Files in accompanying data:
-- ma-bak-cepc-0001_local_pairwise_qa.cif (local pairwise QA scores)
-- ma-bak-cepc-0001_i95.a3m (multiple sequence alignments)
-
-Full details are available in [ModelCIF format](https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/)in the model mmCIF file.
-
-
-(modelcif_MA_test/1crn.cif)
-Full details are available in [ModelCIF format](https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/)in the model mmCIF file.
-
-
-(modelcif_MA_test/Tara_A0A1B0GTU1-O75152_unrelaxed_rank_1_model_1.cif)
-The model has the following global model confidence scores: pLDDT of 32.232, pTM of 0.24.
-
-Local per-residue model confidence scores (pLDDT) are available in the model mmCIF file and local per-residue-pair scores (PAE) in the accompanying data download.
-
-Files in accompanying data:
-- A0A1B0GTU1-O75152_unrelaxed_rank_1_model_1_local_pairwise_qa.cif (local pairwise QA scores): Predicted aligned error.
-
-Full details are available in [ModelCIF format](https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/)in the model mmCIF file.
-
-
-(modelcif_MA_test/Var3D_I6XD65_1046.cif)
-Full details are available in [ModelCIF format](https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/)in the model mmCIF file.
-
-
-(modelcif_MA_test/Var3D_L7N665_1046.cif)
-The model has the following global model confidence scores: pLDDT of 88.204, pTM of 0.884, ipTM of 0.874.
-
-Local per-residue model confidence scores (pLDDT) are available in the model mmCIF file and local per-residue-pair scores (PAE) in the accompanying data download.
-
-Files in accompanying data:
-- tmp/L7N665_1046_local_pairwise_qa.cif (local pairwise QA scores): Predicted aligned error.
-
-Full details are available in [ModelCIF format](https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/)in the model mmCIF file.
-
-
-(modelcif_MA_test/Var3D_P9WIE5_3767.cif)
-Full details are available in [ModelCIF format](https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/)in the model mmCIF file.
-
-
-(modelcif_MA_test/ORNL_F0JBU9_9DELT.cif)
-The model has a global model confidence score (pLDDT) of 92.31.
-
-Local per-residue model confidence scores (pLDDT) and local per-residue-pair scores (PAE) are available in the model mmCIF file.
-
-Full details are available in [ModelCIF format](https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/)in the model mmCIF file.
-
-
-</pre>
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diff --git a/projects/CoFFE-sponge-proteins/tests/test.ipynb b/projects/CoFFE-sponge-proteins/tests/test.ipynb
deleted file mode 100644
index e63d7dff0c5aea066e3d97160a1c1ca379c8b4aa..0000000000000000000000000000000000000000
--- a/projects/CoFFE-sponge-proteins/tests/test.ipynb
+++ /dev/null
@@ -1,1110 +0,0 @@
-{
- "cells": [
- {
- "cell_type": "code",
- "execution_count": 63,
- "id": "a2436da9",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "PROTEINS ONLY in fasta_file: ['c104827_g1_i1', 'c104894_g1_i2']\n",
- "Working on ./PKG Cut...\n",
- " translating c103531_g3_i1_unrelaxed_rank_1_model_3...\n",
- " preparing data... (0.02s)\n",
- " generating ModelCIF objects... (0.00s)\n",
- " processing QA scores... (0.20s)\n",
- " write to disk... (1.15s)\n",
- " ... done with c103531_g3_i1_unrelaxed_rank_1_model_3 (1.37s).\n",
- " translating c103545_g3_i2_unrelaxed_rank_1_model_3...\n",
- " preparing data... (0.08s)\n",
- " generating ModelCIF objects... (0.00s)\n",
- " processing QA scores... (5.47s)\n",
- " write to disk... (19.48s)\n",
- " ... done with c103545_g3_i2_unrelaxed_rank_1_model_3 (25.13s).\n",
- "... done with ./PKG Cut.\n"
- ]
- }
- ],
- "source": [
- "# fetch all functions from there for testing (__name__ hack to avoid executing main)\n",
- "__name__ = \"test\"\n",
- "execfile(\"./scripts/translate2modelcif.py\")\n",
- "_main()"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 3,
- "id": "3c15acf4",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "PROTEINS ONLY in fasta_file: ['c104827_g1_i1', 'c104894_g1_i2']\n"
- ]
- }
- ],
- "source": [
- " # HC filepaths\n",
- " cnfg_file = \"./PKG/config.json\"\n",
- " metadata_file = \"./PKG/model_archive_metadata.csv\"\n",
- " fasta_file = \"./PKG/Spongilla_lacustris_translated_proteome_fixed.fasta\"\n",
- " model_dir = \"./PKG Cut\"\n",
- " # model_dir = \"./PKG-all\"\n",
- " out_dir = \"./modelcif\"\n",
- " compress = False\n",
- " #\n",
- "\n",
- " # parse/fetch global data\n",
- " config_data = _parse_colabfold_config(cnfg_file)\n",
- " metadata = _get_metadata(metadata_file)\n",
- " seq_dict = _get_sequences(fasta_file, metadata)\n",
- " if compress:\n",
- " cifext = \"cif.gz\"\n",
- " else:\n",
- " cifext = \"cif\"\n",
- " # fetch a single randomly chosen UniProt entry for tax info\n",
- " upkb_data = _fetch_upkb_entry(\"P42690\")\n",
- " tax_info = {k: v for k, v in upkb_data.items() \\\n",
- " if k in [\"up_organism\", \"up_ncbi_taxid\"]}"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 4,
- "id": "91657e38",
- "metadata": {},
- "outputs": [],
- "source": [
- "fle = \"c103531_g3_i1_unrelaxed_rank_1_model_3.pdb\""
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 5,
- "id": "281944d3",
- "metadata": {},
- "outputs": [],
- "source": [
- " file_prfx, mdl_name = _check_model_extra_files_present(model_dir,\n",
- " fle)\n",
- " fle = os.path.join(model_dir, fle)\n",
- " mdlcf_json = _create_json(config_data)\n",
- " mdlcf_json[\"tax_info\"] = tax_info\n",
- " # mdl_name = [TITLE]_unrelaxed_rank_X_model_Y.pdb\n",
- " mdl_name_parts = mdl_name.split('_')\n",
- " assert len(mdl_name_parts) == 8\n",
- " assert int(mdl_name_parts[5]) == 1 # rank 1 only\n",
- " mdlcf_json[\"mdl_num\"] = int(mdl_name_parts[7])\n",
- " mdlcf_json[\"mdl_title\"] = '_'.join(mdl_name_parts[:3])"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 6,
- "id": "0c9e86af",
- "metadata": {},
- "outputs": [],
- "source": [
- " ost_ent = _create_model_json(mdlcf_json, fle, seq_dict, metadata)\n",
- "\n",
- " # read quality scores from JSON file\n",
- " _get_scores(mdlcf_json, file_prfx)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 7,
- "id": "aaa3c7d8",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- " generating ModelCIF objects... (0.00s)\n",
- " processing QA scores... (0.34s)\n",
- " write to disk... (1.04s)\n"
- ]
- }
- ],
- "source": [
- " _store_as_modelcif(mdlcf_json, ost_ent, out_dir, mdl_name, compress)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 8,
- "id": "9f1a7a14",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "dict_keys(['max_pae', 'pae', 'plddt', 'ptm'])\n"
- ]
- }
- ],
- "source": [
- "scores = json.load(open(\"./PKG Cut/c103545_g3_i2_unrelaxed_rank_1_model_3_scores.json\"))\n",
- "print(scores.keys())"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 9,
- "id": "afafbf78",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "WEIRD NAME c100000_g1_i2_unrelaxed_rank_c100000_g1_i2_model_3\n",
- "WEIRD NAME c100001_g1_i1_unrelaxed_rank_1_model_c100001_g1_i1\n"
- ]
- }
- ],
- "source": [
- "# check files\n",
- "pdb_files = open(\"./PKG/files_PDB.txt\").readlines()\n",
- "json_files = open(\"./PKG/files_JSON.txt\").readlines()\n",
- "assert len(pdb_files) == len(json_files)\n",
- "\n",
- "mdl_titles = []\n",
- "for pdb_file, json_file in zip(sorted(pdb_files), sorted(json_files)):\n",
- " splitfile = os.path.split(pdb_file.strip())\n",
- " assert len(splitfile) == 2\n",
- " if splitfile[1]:\n",
- " mdl_name, mdl_ext = os.path.splitext(splitfile[1])\n",
- " assert mdl_ext == \".pdb\"\n",
- " splitfile_j = os.path.split(json_file.strip())\n",
- " assert len(splitfile_j) == 2\n",
- " assert splitfile_j[1] == f\"{mdl_name}_scores.json\"\n",
- " mdl_name_parts = mdl_name.split('_')\n",
- " if len(mdl_name_parts) != 8 or mdl_name_parts[5] != '1':\n",
- " print(\"WEIRD NAME\", mdl_name)\n",
- " mdl_title = '_'.join(mdl_name_parts[:3])\n",
- " mdl_titles.append(mdl_title)\n",
- " \n",
- "assert len(set(mdl_titles)) == len(mdl_titles)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 10,
- "id": "9146d967",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "PROTEINS ONLY in metadata: ['c104658_g3_i5', 'c104704_g1_i1', 'c104839_g1_i1', 'c104839_g1_i3', 'c104872_g1_i1', 'c104894_g1_i3', 'c104922_g1_i2', 'c104954_g1_i2', 'c104956_g1_i1', 'c104958_g1_i1', 'c104973_g1_i2']\n"
- ]
- },
- {
- "data": {
- "text/plain": [
- "(41932, 41943, 11)"
- ]
- },
- "execution_count": 10,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "# all in metadata?\n",
- "only_in_metadata = set(metadata.index) - set(mdl_titles)\n",
- "if only_in_metadata:\n",
- " print(\"PROTEINS ONLY in metadata:\", sorted(only_in_metadata))\n",
- "only_in_seqs = set(mdl_titles) - set(metadata.index)\n",
- "assert len(only_in_seqs) == 0\n",
- "len(mdl_titles), len(metadata), len(only_in_metadata)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 11,
- "id": "3e6e7c3b",
- "metadata": {},
- "outputs": [],
- "source": [
- "# check files that were converted (input is std out from run cut to only include \"translating...\")\n",
- "log_lines = open(\"./FromWork/docker_out_clean.txt\").readlines()"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 12,
- "id": "3e67fab0",
- "metadata": {},
- "outputs": [],
- "source": [
- "# plenty of assertions in here should also catch any errors...\n",
- "idx = 0\n",
- "timings = dict()\n",
- "while idx < len(log_lines):\n",
- " l = log_lines[idx].strip()\n",
- " if \"already done...\" in l:\n",
- " idx += 1\n",
- " continue\n",
- " assert l.startswith(\"translating\")\n",
- " mdl_title = \"_\".join(l.split()[1].split('_')[:3])\n",
- " l = log_lines[idx + 1].strip()\n",
- " assert l.startswith(\"preparing data\")\n",
- " assert l.endswith(\"s)\")\n",
- " t_prep = float(l.split()[-1][1:-2])\n",
- " l = log_lines[idx + 2].strip()\n",
- " assert l.startswith(\"generating ModelCIF objects\")\n",
- " assert l.endswith(\"s)\")\n",
- " t_cif = float(l.split()[-1][1:-2])\n",
- " l = log_lines[idx + 3].strip()\n",
- " assert l.startswith(\"processing QA scores\")\n",
- " assert l.endswith(\"s)\")\n",
- " t_qa = float(l.split()[-1][1:-2])\n",
- " l = log_lines[idx + 4].strip()\n",
- " assert l.startswith(\"write to disk\")\n",
- " assert l.endswith(\"s)\")\n",
- " t_write = float(l.split()[-1][1:-2])\n",
- " l = log_lines[idx + 5].strip()\n",
- " assert l.startswith(\"... done with\")\n",
- " assert l.endswith(\"s).\")\n",
- " t_all = float(l.split()[-1][1:-3])\n",
- " timings[mdl_title] = {\n",
- " \"seq_len\": len(seq_dict[mdl_title]),\n",
- " \"t_prep\": t_prep,\n",
- " \"t_cif\": t_cif,\n",
- " \"t_qa\": t_qa,\n",
- " \"t_write\": t_write,\n",
- " \"t_all\": t_all\n",
- " }\n",
- " idx += 6"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 13,
- "id": "fa6b06ac",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "DONE 37738 models\n",
- "MISSING 4194 models\n"
- ]
- }
- ],
- "source": [
- "print(f\"DONE {len(timings)} models\")\n",
- "assert len(set(timings) - set(mdl_titles)) == 0\n",
- "missing_ones = set(mdl_titles) - set(timings)\n",
- "print(f\"MISSING {len(missing_ones)} models\")"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 14,
- "id": "0025c378",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- " 2\n",
- "2.106e-05 x - 4.487e-05 x + 0.05244\n",
- "Average time per model (s): 2.1000026498489452\n"
- ]
- },
- {
- "data": {
- "image/png": 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\n",
- "text/plain": [
- "<Figure size 432x288 with 1 Axes>"
- ]
- },
- "metadata": {},
- "output_type": "display_data"
- }
- ],
- "source": [
- "%matplotlib inline\n",
- "import matplotlib.pyplot as plt\n",
- "x = []\n",
- "y = []\n",
- "y2 = []\n",
- "for v in timings.values():\n",
- " x.append(v[\"seq_len\"])\n",
- " y.append(v[\"t_all\"])\n",
- " y2.append(v[\"t_write\"])\n",
- "# fit quadratic function (for fun)\n",
- "model = np.poly1d(np.polyfit(x, y, 2))\n",
- "print(model)\n",
- "# plot it\n",
- "plt.scatter(x, y)\n",
- "plt.scatter(x, y2)\n",
- "polyline = np.linspace(1, max(x), 50)\n",
- "plt.plot(polyline, model(polyline))\n",
- "plt.xlabel(\"seq. length\")\n",
- "plt.ylabel(\"conversion time\")\n",
- "plt.legend([\"quadratic fit\", \"total time\", \"write time\"])\n",
- "plt.gcf().patch.set_facecolor('white')\n",
- "print(\"Average time per model (s):\", sum(y) / len(y))"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 16,
- "id": "d5be3755",
- "metadata": {},
- "outputs": [],
- "source": [
- "# check results (self-contained version)\n",
- "from ost import io\n",
- "fasta_file = \"./PKG/Spongilla_lacustris_translated_proteome_fixed.fasta\"\n",
- "out_dir = \"./modelcif\"\n",
- "cifext = \"cif\"\n",
- "seqs = io.LoadSequenceList(fasta_file)\n",
- "seq_dict = {'_'.join(s.name.split('_')[:3]): s.string for s in seqs}\n",
- "for out_fle in sorted(os.listdir(out_dir)):\n",
- " if not out_fle.endswith(cifext) or \"_local_pairwise_qa\" in out_fle:\n",
- " continue\n",
- " mdl_name = os.path.splitext(out_fle)[0]\n",
- " mdl_title = '_'.join(mdl_name.split('_')[:3])\n",
- " # check if result can be read and has expected seq.\n",
- " ent = io.LoadMMCIF(os.path.join(out_dir, out_fle))\n",
- " assert ent.chain_count == 1, f\"Bad chain count {mdl_title}\"\n",
- " ent_seq = \"\".join(res.one_letter_code for res in ent.residues)\n",
- " assert ent_seq == seq_dict[mdl_title], f\"Bad seq. {mdl_title}\"\n",
- " # NOTE: can use only this bit in main loop with os.path.join(out_dir, f\"{mdl_name}.{cifext}\")"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 17,
- "id": "27544e00",
- "metadata": {},
- "outputs": [
- {
- "ename": "AssertionError",
- "evalue": "c103545_g3_i2",
- "output_type": "error",
- "traceback": [
- "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
- "\u001b[0;31mAssertionError\u001b[0m Traceback (most recent call last)",
- "Input \u001b[0;32mIn [17]\u001b[0m, in \u001b[0;36m<cell line: 2>\u001b[0;34m()\u001b[0m\n\u001b[1;32m 4\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m line \u001b[38;5;129;01min\u001b[39;00m desc\u001b[38;5;241m.\u001b[39msplitlines():\n\u001b[1;32m 5\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m,\u001b[39m\u001b[38;5;124m\"\u001b[39m \u001b[38;5;129;01min\u001b[39;00m line:\n\u001b[0;32m----> 6\u001b[0m \u001b[38;5;28;01massert\u001b[39;00m line\u001b[38;5;241m.\u001b[39mstartswith(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mCoFFE orthogroups\u001b[39m\u001b[38;5;124m\"\u001b[39m) \u001b[38;5;129;01mor\u001b[39;00m line\u001b[38;5;241m.\u001b[39mstartswith(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mCoFFE GO terms\u001b[39m\u001b[38;5;124m\"\u001b[39m), title\n",
- "\u001b[0;31mAssertionError\u001b[0m: c103545_g3_i2"
- ]
- }
- ],
- "source": [
- "# check ,-separation in metadata\n",
- "for title, row in metadata.iterrows():\n",
- " desc = row.description\n",
- " for line in desc.splitlines():\n",
- " if \",\" in line:\n",
- " assert line.startswith(\"CoFFE orthogroups\") or line.startswith(\"CoFFE GO terms\"), title"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 18,
- "id": "9bb42dd2",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "'CoFFE UniProt function: FUNCTION: Involved in hearing and vision as member of the USH2 complex. Necessary for elongation and maintenance of inner and outer hair cell stereocilia in the organ of Corti in the inner ear. Involved in the maintenance of the hair bundle ankle region, which connects stereocilia in cochlear hair cells of the inner ear. In retina photoreceptors, required for the maintenance of periciliary membrane complex that seems to play a role in regulating intracellular protein transport. {ECO:0000250|UniProtKB:Q80VW5}.'"
- ]
- },
- "execution_count": 18,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "line"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 19,
- "id": "963be9a1",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "c2495_g1_i1 CoFFE UniProt function: FUNCTION: Protein O-mannose kinase that specifically mediates phosphorylation at the 6-position of an O-mannose of the trisaccharide (N-acetylgalactosamine (GalNAc)-beta-1,3-N-acetylglucosamine (GlcNAc)-beta-1,4-mannose) to generate phosphorylated O-mannosyl trisaccharide (N-acetylgalactosamine-beta-1,3-N-acetylglucosamine-beta-1,4-(phosphate-6-)mannose). Phosphorylated O-mannosyl trisaccharide is a carbohydrate structure present in alpha-dystroglycan (DAG1), which is required for binding laminin G-like domain-containing extracellular proteins with high affinity. Only shows kinase activity when the GalNAc-beta-3-GlcNAc-beta-terminus is linked to the 4-position of O-mannose, suggesting that this disaccharide serves as the substrate recognition motif (By similarity). {ECO:0000250}.\n"
- ]
- }
- ],
- "source": [
- "# ok so we cannot blindly assume that commas are bad...\n",
- "\n",
- "# check longest tokens in metadata\n",
- "new_desc = dict()\n",
- "for title, row in metadata.iterrows():\n",
- " desc = row.description\n",
- " new_lines = []\n",
- " for line in desc.splitlines():\n",
- " is_loi = line.startswith(\"CoFFE orthogroups\") \\\n",
- " or line.startswith(\"CoFFE GO terms\") \\\n",
- " or line.startswith(\"Emapper orthogroups\") \\\n",
- " or line.startswith(\"Emapper GO terms\") \\\n",
- " or line.startswith(\"CoFFE PFAM domains\") \\\n",
- " or line.startswith(\"Emapper PFAM domains\")\n",
- " if \",\" in line and is_loi:\n",
- " new_line = line.replace(\",\", \", \")\n",
- " else:\n",
- " new_line = line\n",
- " token_lengths = [len(token) for token in new_line.split()]\n",
- " if token_lengths and max(token_lengths) > 80:\n",
- " print(title, new_line)\n",
- " new_lines.append(new_line)\n",
- " new_desc[title] = \"\\n\".join(new_lines)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 20,
- "id": "a62a49f5",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "[[19286, 'c90048_g1_i1'],\n",
- " [20561, 'c104513_g1_i1'],\n",
- " [22685, 'c91485_g1_i1'],\n",
- " [27674, 'c95514_g1_i1'],\n",
- " [27687, 'c95514_g1_i3']]"
- ]
- },
- "execution_count": 20,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "# c2495_g1_i1 tested in MA and ok...let's check largest ones\n",
- "sorted([len(desc), title] for title, desc in new_desc.items())[-5:]\n",
- "# looks ok too..."
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 35,
- "id": "f9b0899e",
- "metadata": {
- "scrolled": false
- },
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "Model generated using ColabFold v1.2.0 with AlphaFold producing 5 models with 3 recycles each without model relaxation without templates ranked by pLDDT starting from an MSA from MMseqs2 (UniRef+Environmental)\n",
- "Emapper preferred name [EggNOG]: -\n",
- "Emapper description [EggNOG]: -\n",
- "CoFFE preferred name [E\n",
- "--------------------------------------------------------------------------------\n",
- "Model generated using ColabFold v1.2.0 with AlphaFold producing 5 models with 3 recycles each without model relaxation without templates ranked by pLDDT starting from an MSA from MMseqs2 (UniRef+Environmental)\n",
- "\n",
- "Emapper preferred name [EggNOG]: -\n",
- "Emapper description [EggNOG]: -\n",
- "CoFFE preferred name [\n"
- ]
- }
- ],
- "source": [
- "# checking multiline details and markdown\n",
- "from ost import io\n",
- "import modelcif.reader\n",
- "file_path = \"./modelcif/c103531_g3_i1_unrelaxed_rank_1_model_3.cif\"\n",
- "ent, info = io.LoadMMCIF(file_path, info=True)\n",
- "with open(file_path) as fh:\n",
- " s, = modelcif.reader.read(fh)\n",
- "print(info.GetStructDetails().model_details[:300])\n",
- "print('-' * 80)\n",
- "print(s.model_details[:300])\n",
- "# NOTE: there may be a bug in OST's multiline parsing in terms of keeping line breaks intact...\n",
- "# ...and lines are stripped so that we lose the trailing 2 spaces..."
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 36,
- "id": "84326bee",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "isoform ID: c103531_g3_i1\n",
- "\n",
- "And **fat** and *emphasized* markdown with lists:\n",
- "\n",
- "- item1\n",
- "- item2\n",
- "\n",
- "and [links](https://github.com).\n",
- "\n",
- "Note that markdown ignores linebreaks\n",
- "unless two spaces at end \n",
- "<- as in line above\n",
- "--------------------------------------------------------------------------------\n",
- "<p>isoform ID: c103531_g3_i1</p>\n",
- "<p>And <strong>fat</strong> and <em>emphasized</em> markdown with lists:</p>\n",
- "<ul>\n",
- "<li>item1</li>\n",
- "<li>item2</li>\n",
- "</ul>\n",
- "<p>and <a href=\"https://github.com\">links</a>.</p>\n",
- "<p>Note that markdown ignores linebreaks\n",
- "unless two spaces at end<br />\n",
- "<- as in line above</p>\n"
- ]
- }
- ],
- "source": [
- "import markdown\n",
- "markdown_test = \"\"\"isoform ID: c103531_g3_i1\n",
- "\n",
- "And **fat** and *emphasized* markdown with lists:\n",
- "\n",
- "- item1\n",
- "- item2\n",
- "\n",
- "and [links](https://github.com).\n",
- "\n",
- "Note that markdown ignores linebreaks\n",
- "unless two spaces at end \n",
- "<- as in line above\"\"\"\n",
- "print(markdown_test)\n",
- "print('-' * 80)\n",
- "print(markdown.markdown(markdown_test))"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 2,
- "id": "c4be6188",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "- none : 3.84s vs 25.59s, 27824253\n",
- "- gzip : 2.70s vs 25.59s, 5417406\n",
- "- gz : 0.87s vs 25.59s, 5389143\n",
- "- gz(9): 2.74s vs 25.59s, 5417802\n",
- "- bz : 1.61s vs 25.59s, 3802066\n",
- "- bz(9): 1.56s vs 25.59s, 3802066\n",
- "- lzma : 22.27s vs 25.59s, 2083062\n"
- ]
- }
- ],
- "source": [
- "# test zip file speed and size\n",
- "from timeit import default_timer as timer\n",
- "import os, zipfile, gzip, shutil\n",
- "\n",
- "def zip_test(compression, level=None):\n",
- " zip_file = \"test.zip\"\n",
- " files = [\"modelcif/c103531_g3_i1_unrelaxed_rank_1_model_3_local_pairwise_qa.cif\"]\n",
- " files.append(\"modelcif/c103545_g3_i2_unrelaxed_rank_1_model_3_local_pairwise_qa.cif\")\n",
- " pstart = timer()\n",
- " if compression == \"gzip\":\n",
- " file_size = 0\n",
- " for file in files:\n",
- " with open(file, 'rb') as f_in:\n",
- " with gzip.open(zip_file, 'wb') as f_out:\n",
- " shutil.copyfileobj(f_in, f_out)\n",
- " file_size += os.path.getsize(zip_file)\n",
- " else:\n",
- " with zipfile.ZipFile(zip_file, 'w', compression, compresslevel=level) as myzip:\n",
- " for file in files:\n",
- " myzip.write(file)\n",
- " file_size = os.path.getsize(zip_file)\n",
- " # for comparison full translation time for the files (i.e. from running _main)\n",
- " if len(files) == 1:\n",
- " ref_time = \"1.38s\"\n",
- " else:\n",
- " ref_time = f\"{1.38+24.21}s\"\n",
- " if compression == zipfile.ZIP_STORED:\n",
- " label = \"none \"\n",
- " elif compression == zipfile.ZIP_DEFLATED:\n",
- " if level:\n",
- " label = f\"gz({level})\"\n",
- " else:\n",
- " label = \"gz \"\n",
- " elif compression == zipfile.ZIP_BZIP2:\n",
- " if level:\n",
- " label = f\"bz({level})\"\n",
- " else:\n",
- " label = \"bz \"\n",
- " elif compression == zipfile.ZIP_LZMA:\n",
- " label = \"lzma \"\n",
- " else:\n",
- " label = \"gzip \"\n",
- " print(f\"- {label}: {timer()-pstart:.2f}s vs {ref_time}, {file_size}\")\n",
- " os.remove(zip_file)\n",
- "\n",
- "zip_test(zipfile.ZIP_STORED)\n",
- "zip_test(\"gzip\")\n",
- "zip_test(zipfile.ZIP_DEFLATED)\n",
- "zip_test(zipfile.ZIP_DEFLATED, 9)\n",
- "zip_test(zipfile.ZIP_BZIP2)\n",
- "zip_test(zipfile.ZIP_BZIP2, 9)\n",
- "zip_test(zipfile.ZIP_LZMA)"
- ]
- },
- {
- "cell_type": "markdown",
- "id": "a9dc14c2",
- "metadata": {},
- "source": [
- "FAZIT: lzma is too slow but bzip2 has good compromise of size vs speed"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 1,
- "id": "2f604e78",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "137179 vs 184836 in 0.25s\n"
- ]
- }
- ],
- "source": [
- "# check out pdbx\n",
- "import os\n",
- "from timeit import default_timer as timer\n",
- "from pdbx.reader.PdbxReader import PdbxReader\n",
- "from pdbx.writer.PdbxWriter import PdbxWriter\n",
- "test_file = \"modelcif_MA_test/c103531_g3_i1_unrelaxed_rank_1_model_3.cif\"\n",
- "# test_file = \"modelcif_MA_test/AF-P38129-F1-model_v3.cif\"\n",
- "# test_file = \"modelcif_MA_test/ma-bak-cepc-0001.cif\"\n",
- "# test_file = \"modelcif_MA_test/1crn.cif\"\n",
- "test_file_out = \"modelcif_MA_test/test.cif\"\n",
- "pstart = timer()\n",
- "pdbx_data = []\n",
- "with open(test_file, 'r') as f_in:\n",
- " pdbxR = PdbxReader(f_in)\n",
- " pdbxR.read(pdbx_data)\n",
- "with open(test_file_out, 'w') as f_out:\n",
- " pdbxW = PdbxWriter(f_out)\n",
- " pdbxW.write(pdbx_data)\n",
- "print(f\"{os.path.getsize(test_file)} vs {os.path.getsize(test_file_out)}\" \\\n",
- " f\" in {timer()-pstart:.2f}s\")"
- ]
- },
- {
- "cell_type": "markdown",
- "id": "210ec7ee",
- "metadata": {},
- "source": [
- "FAZIT: adds lots of spaces but doesn't remove anything \n",
- "ISSUE: quotes around \"stop_...\" removed..."
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 2,
- "id": "ddad4236",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "137179 vs 137099 in 0.03s\n"
- ]
- }
- ],
- "source": [
- "# check out gemmi\n",
- "import gemmi\n",
- "pstart = timer()\n",
- "doc = gemmi.cif.read(test_file)\n",
- "doc.write_file(test_file_out)\n",
- "print(f\"{os.path.getsize(test_file)} vs {os.path.getsize(test_file_out)}\" \\\n",
- " f\" in {timer()-pstart:.2f}s\")"
- ]
- },
- {
- "cell_type": "markdown",
- "id": "9aa4244e",
- "metadata": {},
- "source": [
- "FAZIT: much faster than pdbx, space handling similar to python-modelcif and also not removing anything and handling \"stop_...\" properly\n",
- "\n",
- "Also note that neither of the two messes up the order of tables and so files are easily comparable!\n",
- "\n",
- "**FAZIT**: gemmi is good!"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 14,
- "id": "dde612e7",
- "metadata": {},
- "outputs": [],
- "source": [
- "# quick test changing data_ block name\n",
- "doc = gemmi.cif.read(test_file)\n",
- "doc.sole_block().name = 'test'\n",
- "doc.write_file(test_file_out)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 3,
- "id": "cf4898d9",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "ma_qa_metric\n",
- "['id', 'name', 'description', 'type', 'mode', 'type_other_details', 'software_group_id']\n",
- "[['1', 'pLDDT', 'Predicted accuracy according to the CA-only lDDT in [0,100]', 'pLDDT', 'global', '.', '.'], ['2', 'pTM', 'Predicted accuracy according to the TM-score score in [0,1]', 'pTM', 'global', '.', '.'], ['3', 'pLDDT', 'Predicted accuracy according to the CA-only lDDT in [0,100]', 'pLDDT', 'local', '.', '.'], ['4', 'PAE', 'Predicted aligned error (in Angstroms)', 'PAE', 'local-pairwise', '.', '.']]\n"
- ]
- }
- ],
- "source": [
- "# parsing pdbx\n",
- "# see https://mmcif.wwpdb.org/docs/sw-examples/python/html/\n",
- "# -> all very low level\n",
- "block = pdbx_data[0]\n",
- "if block.exists(\"ma_qa_metric\"):\n",
- " dc = block.getObj(\"ma_qa_metric\")\n",
- " categoryName, attributeNameList, rowList = dc.get()\n",
- " print(categoryName)\n",
- " print(attributeNameList)\n",
- " print(rowList)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 4,
- "id": "a43fc1fb",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "_ma_qa_metric.\n",
- "['_ma_qa_metric.id', '_ma_qa_metric.name', '_ma_qa_metric.description', '_ma_qa_metric.type', '_ma_qa_metric.mode', '_ma_qa_metric.type_other_details', '_ma_qa_metric.software_group_id']\n",
- "[['1', 'pLDDT', \"'Predicted accuracy according to the CA-only lDDT in [0,100]'\", 'pLDDT', 'global', '.', '.'], ['2', 'pTM', \"'Predicted accuracy according to the TM-score score in [0,1]'\", 'pTM', 'global', '.', '.'], ['3', 'pLDDT', \"'Predicted accuracy according to the CA-only lDDT in [0,100]'\", 'pLDDT', 'local', '.', '.'], ['4', 'PAE', \"'Predicted aligned error (in Angstroms)'\", 'PAE', 'local-pairwise', '.', '.']]\n"
- ]
- }
- ],
- "source": [
- "# parsing gemmi\n",
- "# see https://gemmi.readthedocs.io/en/latest/cif.html#block\n",
- "block = doc.sole_block()\n",
- "table = block.find_mmcif_category(\"_ma_qa_metric.\")\n",
- "if table:\n",
- " print(table.get_prefix())\n",
- " print([tag for tag in table.tags])\n",
- " print([[col for col in row] for row in table])"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 15,
- "id": "fdd15c7c",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "[['1', 'pLDDT', 'Predicted accuracy according to the CA-only lDDT in [0,100]', 'pLDDT', 'global', '', ''], ['2', 'pTM', 'Predicted accuracy according to the TM-score score in [0,1]', 'pTM', 'global', '', ''], ['3', 'pLDDT', 'Predicted accuracy according to the CA-only lDDT in [0,100]', 'pLDDT', 'local', '', ''], ['4', 'PAE', 'Predicted aligned error (in Angstroms)', 'PAE', 'local-pairwise', '', '']]\n",
- "\"\"\n"
- ]
- }
- ],
- "source": [
- "# note: \"row.str(#) or \"gemmi.cif.as_string\" map \".\" or \"?\" to \"\" and remove quotes from strings\n",
- "if table:\n",
- " print([[gemmi.cif.as_string(col) for col in row] for row in table])\n",
- "print(f'\"{gemmi.cif.as_string(\"?\")}\"')"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 8,
- "id": "17b4fcbd",
- "metadata": {
- "scrolled": false
- },
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "False\n",
- "<gemmi.cif.Table.Row: 3 local pLDDT pLDDT None>\n",
- "{'id': ['1', '2', '3', '4'], 'name': ['pLDDT', 'pTM', 'pLDDT', 'PAE'], 'description': [\"'Predicted accuracy according to the CA-only lDDT in [0,100]'\", \"'Predicted accuracy according to the TM-score score in [0,1]'\", \"'Predicted accuracy according to the CA-only lDDT in [0,100]'\", \"'Predicted aligned error (in Angstroms)'\"], 'type': ['pLDDT', 'pTM', 'pLDDT', 'PAE'], 'mode': ['global', 'global', 'local', 'local-pairwise'], 'type_other_details': ['.', '.', '.', '.'], 'software_group_id': ['.', '.', '.', '.']}\n"
- ]
- },
- {
- "data": {
- "text/plain": [
- "{'id': ['1', '2', '3', '4'],\n",
- " 'name': ['pLDDT', 'pTM', 'pLDDT', 'PAE'],\n",
- " 'description': ['Predicted accuracy according to the CA-only lDDT in [0,100]',\n",
- " 'Predicted accuracy according to the TM-score score in [0,1]',\n",
- " 'Predicted accuracy according to the CA-only lDDT in [0,100]',\n",
- " 'Predicted aligned error (in Angstroms)'],\n",
- " 'type': ['pLDDT', 'pTM', 'pLDDT', 'PAE'],\n",
- " 'mode': ['global', 'global', 'local', 'local-pairwise'],\n",
- " 'type_other_details': [False, False, False, False],\n",
- " 'software_group_id': [False, False, False, False]}"
- ]
- },
- "execution_count": 8,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "# use find with desired columns (incl. optional ones)\n",
- "table = block.find(\"_ma_qa_metric.\", [\"id\", \"mode\", \"name\", \"type\", \"?meh\"])\n",
- "print(table.has_column(4))\n",
- "# and look for rows according to first column\n",
- "print(table.find_row(\"3\"))\n",
- "# and get dictionary (as is)\n",
- "print(block.get_mmcif_category(\"_ma_qa_metric.\", raw=True))\n",
- "# or nicely processed (? and . becoming None)\n",
- "block.get_mmcif_category(\"_ma_qa_metric.\")"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 206,
- "id": "f60a0c20",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "[[True, True, True, True, False],\n",
- " [True, True, False, True, False],\n",
- " [True, True, False, True, False]]"
- ]
- },
- "metadata": {},
- "output_type": "display_data"
- },
- {
- "data": {
- "text/plain": [
- "[['ColabFold', 'https://github.com/sokrypton/ColabFold', '1.2.0', '1', ''],\n",
- " ['MMseqs2', 'https://github.com/soedinglab/mmseqs2', '', '2', ''],\n",
- " ['AlphaFold', 'https://github.com/deepmind/alphafold', '', '3', '']]"
- ]
- },
- "metadata": {},
- "output_type": "display_data"
- }
- ],
- "source": [
- "# some ways to deal with optional and missing (? or .) data\n",
- "table = block.find(\"_software.\", [\"name\", \"?location\", \"?version\", \"?citation_id\", \"?meh\"])\n",
- "display([[(row.has(idx) and bool(row.str(idx))) for idx in range(len(row))] for row in table])\n",
- "display([[(row.str(idx) if row.has(idx) else '') for idx in range(len(row))] for row in table])"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 17,
- "id": "f554c63c",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "[]"
- ]
- },
- "metadata": {},
- "output_type": "display_data"
- }
- ],
- "source": [
- "# note that the above also works for completely missing tables\n",
- "table = block.find(\"_meh.\", [\"name\", \"?location\", \"?version\", \"?citation_id\", \"?meh\"])\n",
- "display([[(row.has(idx) and bool(row.str(idx))) for idx in range(len(row))] for row in table])"
- ]
- },
- {
- "cell_type": "markdown",
- "id": "36fb3920",
- "metadata": {},
- "source": [
- "# ModelCIF -> MA"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 50,
- "id": "6424ff93",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "USAGE: python test_modelCIF_MA.py [CIF-FILE]\n"
- ]
- }
- ],
- "source": [
- "# fetch all functions from there for testing (__name__ hack to avoid executing main)\n",
- "__name__ = \"test\"\n",
- "execfile(\"./scripts/test_modelCIF_MA.py\")\n",
- "_main()"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 51,
- "id": "6dc9b31d",
- "metadata": {},
- "outputs": [],
- "source": [
- "# define test files for translations below\n",
- "test_files = [\n",
- " \"modelcif_MA_test/c103531_g3_i1_unrelaxed_rank_1_model_3.cif\",\n",
- " \"modelcif_MA_test/AF-P38129-F1-model_v3.cif\",\n",
- " \"modelcif_MA_test/ma-bak-cepc-0001.cif\",\n",
- " \"modelcif_MA_test/1crn.cif\",\n",
- " \"modelcif_MA_test/Tara_A0A1B0GTU1-O75152_unrelaxed_rank_1_model_1.cif\",\n",
- " \"modelcif_MA_test/Var3D_I6XD65_1046.cif\",\n",
- " \"modelcif_MA_test/Var3D_L7N665_1046.cif\",\n",
- " \"modelcif_MA_test/Var3D_P9WIE5_3767.cif\",\n",
- " \"modelcif_MA_test/ORNL_F0JBU9_9DELT.cif\",\n",
- "]\n",
- "\n",
- "# open one for quick testing\n",
- "doc = gemmi.cif.read(test_files[-4])\n",
- "block = doc.sole_block()"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 53,
- "id": "f8258452",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "ModelCIF->MA for modelcif_MA_test/AF-P38129-F1-model_v3.cif\n",
- "--------------------------------------------------------------------------------\n",
- "TITLE: NO TITLE\n",
- "--------------------------------------------------------------------------------\n",
- "OVERVIEW:\n",
- "--------------------------------------------------------------------------------\n",
- "NO ABSTRACT\n",
- "\n",
- "This model is part of the dataset \"TOFILL\"\n",
- "\n",
- "\n",
- "--------------------------------------------------------------------------------\n",
- "MATERIAL:\n",
- "--------------------------------------------------------------------------------\n",
- "The following molecular entities are in the model:\n",
- "- Transcription initiation factor TFIID subunit 5 (chains: A)\n",
- "UniProt: [P38129](https://www.uniprot.org/uniprot/P38129) 1-798; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)\n",
- "\n",
- "The following software was used:\n",
- "- AlphaFold (v2.0)\n",
- "- dssp (4)\n",
- "\n",
- "The following templates were used:\n",
- "- PDB: [6TBM](http://dx.doi.org/10.2210/pdb6TBM/pdb); chains (auth_asym_id): G\n",
- "- PDB: [6TB4](http://dx.doi.org/10.2210/pdb6TB4/pdb); chains (auth_asym_id): G\n",
- "- PDB: [6F3T](http://dx.doi.org/10.2210/pdb6F3T/pdb); chains (auth_asym_id): A\n",
- "- PDB: [6MZC](http://dx.doi.org/10.2210/pdb6MZC/pdb); chains (auth_asym_id): G\n",
- "\n",
- "\n",
- "--------------------------------------------------------------------------------\n",
- "PROCEDURE:\n",
- "--------------------------------------------------------------------------------\n",
- "Step 1 - coevolution MSA\n",
- "Step 2 - template search\n",
- "Step 3 - modeling\n",
- "\n",
- "The model has a global model confidence score (pLDDT) of 73.91.\n",
- "\n",
- "Local per-residue model confidence scores (pLDDT) are available in the model mmCIF file.\n",
- "\n",
- "Full details are available in [ModelCIF format](https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/)in the model mmCIF file.\n",
- "\n",
- "\n",
- "--------------------------------------------------------------------------------\n"
- ]
- }
- ],
- "source": [
- "_process_file(test_files[1])"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": null,
- "id": "e4368fa1",
- "metadata": {},
- "outputs": [],
- "source": []
- }
- ],
- "metadata": {
- "kernelspec": {
- "display_name": "Python 3 (ipykernel)",
- "language": "python",
- "name": "python3"
- },
- "language_info": {
- "codemirror_mode": {
- "name": "ipython",
- "version": 3
- },
- "file_extension": ".py",
- "mimetype": "text/x-python",
- "name": "python",
- "nbconvert_exporter": "python",
- "pygments_lexer": "ipython3",
- "version": "3.8.10"
- }
- },
- "nbformat": 4,
- "nbformat_minor": 5
-}
diff --git a/projects/CoFFE-sponge-proteins/tests/test_modelCIF_MA.py b/projects/CoFFE-sponge-proteins/tests/test_modelCIF_MA.py
deleted file mode 100644
index 5fdd23c63bcc52b6de6aeba5421c7064bbe49c76..0000000000000000000000000000000000000000
--- a/projects/CoFFE-sponge-proteins/tests/test_modelCIF_MA.py
+++ /dev/null
@@ -1,470 +0,0 @@
-# USAGE: python test_modelCIF_MA.py [CIF-FILE]
-# OUTPUT: preview of MA entry
-
-import gemmi, sys
-
-################################################################################
-# define converters for printing or for html (here markdown used for display)
-def _make_url(link_text, link_url):
- return f"[{link_text}]({link_url})"
-def _make_list(list_top, list_items):
- list_texts = [f"- {item}" for item in list_items]
- list_text = '\n'.join(list_texts)
- if list_texts:
- return(f"{list_top}\n{list_text}")
-def _make_multiline_text(lines):
- return '\n'.join(lines)
-def _make_paragraph(text):
- return f"{text}\n\n"
-################################################################################
-
-################################################################################
-# HELPERS
-################################################################################
-def _get_chain_entity(block):
- # NOTE: adapted from ParseCIF (asym_ids as list and handle optional fields)
- chain_entity = {}
-
- ma_target_entity = block.find(
- "_ma_target_entity_instance.", ["asym_id", "entity_id"]
- )
- if ma_target_entity:
- for row in ma_target_entity:
- if row["entity_id"] in chain_entity:
- chain_entity[row["entity_id"]]["asym_ids"].append(
- gemmi.cif.as_string(row["asym_id"])
- )
- else:
- chain_entity[row["entity_id"]] = {
- "asym_ids": [row["asym_id"]],
- "ma_target_ref_db_details": [],
- }
-
- for row in block.find("_entity.", ["id", "pdbx_description"]):
- chain_entity[row["id"]].update(
- {"pdbx_description": gemmi.cif.as_string(row["pdbx_description"])}
- )
-
- cols = [
- "target_entity_id",
- "db_accession",
- "db_name",
- "?db_name_other_details",
- "?organism_scientific",
- "?seq_db_align_begin",
- "?seq_db_align_end",
- ]
- # NOTE: row[col] doesn't work with '?' in find! Bad crashed happen if you try...
- for row in block.find("_ma_target_ref_db_details.", cols):
- json_obj = {}
- target_entity_id = row[0] # make sure this stays at idx 0 in cols!
- for idx, cq in enumerate(cols):
- if cq.startswith('?'):
- col = cq[1:]
- if not row.has(idx):
- json_obj[col] = None
- continue
- else:
- col = cq
- if col != "target_entity_id":
- if col.find("seq_db_align") > -1:
- json_obj[col] = gemmi.cif.as_int(row[idx])
- else:
- json_obj[col] = gemmi.cif.as_string(row[idx])
- chain_entity[target_entity_id][
- "ma_target_ref_db_details"
- ].append(json_obj)
-
- for row in block.find(
- "_entity_poly.",
- ["entity_id", "pdbx_strand_id", "pdbx_seq_one_letter_code"],
- ):
- chain_entity[row["entity_id"]]["olc"] = gemmi.cif.as_string(
- row["pdbx_seq_one_letter_code"]
- ).replace("\n", "")
-
- return chain_entity
-
-def _fetch_qa_data(block):
- """Get 3 lists of QA scores and extract global scores."""
- # fetch main info
- table = block.find("_ma_qa_metric.", ["id", "name", "mode", "type"])
- qa_dict = dict() # for easy access: keyed on "id" and rest as dict
- for row in table:
- d = {key: row.str(idx + 1) for idx, key in enumerate(["name", "mode", "type"])}
- qa_dict[row.str(0)] = d
- # fetch global scores
- qa_global = []
- table = block.find("_ma_qa_metric_global.", ["metric_id", "metric_value"])
- for row in table:
- metric_id = row.str(0)
- metric_value = gemmi.cif.as_number(row.get(1))
- if metric_id in qa_dict:
- assert qa_dict[metric_id]["mode"] == "global"
- qa_dict[metric_id]["value"] = metric_value
- qa_global.append(qa_dict[metric_id])
- # fetch local scores
- qa_local = [d for d in qa_dict.values() if d["mode"] == "local"]
- qa_local_pairwise = [d for d in qa_dict.values() if d["mode"] == "local-pairwise"]
- return qa_global, qa_local, qa_local_pairwise
-################################################################################
-
-################################################################################
-# TEXT GETTERS
-# -> each function turns gemmi-block into a text
-# -> bits that could be reused elsewhere are given by helpers above
-################################################################################
-def _get_title_text(block):
- title = block.find_value("_struct.title")
- if title:
- title = gemmi.cif.as_string(title)
- if title:
- return title
- else:
- return "NO TITLE"
-
-def _get_overview_text(block):
- abstract = block.find_value("_struct.pdbx_model_details")
- if abstract:
- abstract = gemmi.cif.as_string(abstract)
- if abstract:
- text = _make_paragraph(abstract)
- else:
- text = _make_paragraph("NO ABSTRACT")
- # TODO: "TOFILL" below to be filled by MA using info from model set
- text += _make_paragraph('This model is part of the dataset "TOFILL"')
- return text
-
-def _get_entity_text(block):
- # NOTE: reuse (updated!) code from ParseCIF
- chain_entity = _get_chain_entity(block)
- # do it
- item_strings = []
- for ent in chain_entity:
- item_title = f"{chain_entity[ent]['pdbx_description']} " \
- f"(chains: {', '.join(chain_entity[ent]['asym_ids'])})"
- db_links = [item_title]
- for i, ref in enumerate(chain_entity[ent]["ma_target_ref_db_details"]):
- if ref["db_name"] == "UNP":
- link_text = ref['db_accession']
- link_url = f"https://www.uniprot.org/uniprot/{ref['db_accession']}"
- db_link = f"UniProt: {_make_url(link_text, link_url)}"
- elif ref["db_name"] == "OrthoDB":
- link_text = ref['db_accession']
- link_url = f"https://www.orthodb.org/?query={ref['db_accession']}"
- db_link = f"OrthoDB: {_make_url(link_text, link_url)}"
- elif ref["db_name"] == "Other" and ref["db_name_other_details"]:
- db_link = f"{ref['db_name_other_details']}: {ref['db_accession']}"
- else:
- db_link = f"{ref['db_name']}: {ref['db_accession']}"
- if ref['seq_db_align_begin'] and ref['seq_db_align_end']:
- db_link += f" {ref['seq_db_align_begin']}-{ref['seq_db_align_end']}"
- if ref['organism_scientific']:
- db_link += f"; {ref['organism_scientific']}"
- db_links.append(db_link)
- item_strings.append(_make_multiline_text(db_links))
- # and into a paragraph...
- if item_strings:
- list_top = f"The following molecular entities are in the model:"
- return _make_paragraph(_make_list(list_top, item_strings))
- else:
- return ""
-
-def _get_sw_text(block):
- # get author names for each citation
- tmp = dict()
- for row in block.find("_citation_author.", ["citation_id", "name"]):
- cid = row.str(0)
- name = row.str(1)
- if cid not in tmp:
- tmp[cid] = {"name": name.split()[0].split(",")[0], "etal": ""}
- else:
- tmp[cid]["etal"] = " et al."
- cit_names = {cid: (d["name"] + d["etal"]) for cid, d in tmp.items()}
- # add year if available
- table = block.find("_citation.", ["id", "?year"])
- if table.has_column(1):
- for row in table:
- cid = row.str(0)
- year = row.str(1)
- if cid in cit_names and year:
- cit_names[cid] += " " + year
- # add URL if available
- cit_urls = {}
- table = block.find("_citation.", ["id", "?pdbx_database_id_DOI", "?pdbx_database_id_PubMed"])
- formatters = ["https://doi.org/%s",
- "https://www.ncbi.nlm.nih.gov/pubmed/%s"]
- for row in table:
- cid = row.str(0)
- # add whichever URL we find first
- for i in range(1, table.width()):
- if row.has(i) and row.str(i):
- cit_urls[cid] = formatters[i - 1] % row.str(i)
- break
- # now map this to software
- item_strings = []
- table = block.find("_software.", ["name", "?location", "?version", "?citation_id"])
- for row in table:
- sw_name = row.str(0)
- if row.has(1) and row.str(1):
- item = _make_url(sw_name, row.str(1))
- else:
- item = sw_name
- if row.has(2) and row.str(2):
- item += f" ({row.str(2)})"
- if row.has(3) and row.str(3) in cit_names:
- cid = row.str(3)
- if cid in cit_urls:
- item += f" ({_make_url(cit_names[cid], cit_urls[cid])})"
- else:
- item += f" ({cit_names[cid]})"
- item_strings.append(item)
- # and into a paragraph...
- if item_strings:
- list_top = f"The following software was used:"
- return _make_paragraph(_make_list(list_top, item_strings))
- else:
- return ""
-
-def _get_ref_db_text(block):
- # look for DBs with version or release date
- item_strings = []
- table = block.find("_ma_data_ref_db.", ["name", "?version", "?release_date"])
- for row in table:
- item = f"{row.str(0)}"
- # add whichever version we find first
- for i in range(1, 3):
- if row.has(i) and row.str(i):
- item += f" ({row.str(i)})"
- break
- item_strings.append(item)
- # and into a paragraph...
- if item_strings:
- list_top = f"The following reference databases were used:"
- return _make_paragraph(_make_list(list_top, item_strings))
- else:
- return ""
-
-def _get_tpl_text(block):
- # collect info per tpl-id
- tpl_dict = {} # keyed on template_id
- # fetch main info
- cols = ["template_id", "target_asym_id", "template_auth_asym_id",
- "?template_label_asym_id"]
- for row in block.find("_ma_template_details.", cols):
- tid = row.str(0)
- tpl_dict[tid] = {
- "trg_asym_id": row.str(1),
- "tpl_auth_asym_id": row.str(2)
- }
- if row.has(3) and row.str(3):
- tpl_dict[tid]["tpl_label_asym_id"] = row.str(3)
- # add ref DBs
- cols = ["template_id", "db_accession_code", "db_name",
- "?db_name_other_details"]
- for row in block.find("_ma_template_ref_db_details.", cols):
- tid = row.str(0)
- if tid in tpl_dict:
- tpl_dict[tid]["db_acc"] = row.str(1)
- if row.str(2) == "Other" and row.has(3) and row.str(3):
- tpl_dict[tid]["db_name"] = row.str(3)
- else:
- tpl_dict[tid]["db_name"] = row.str(2)
- # add info for small molecules
- cols = ["template_id", "?comp_id", "?details"]
- for row in block.find("_ma_template_non_poly.", cols):
- tid = row.str(0)
- if tid in tpl_dict:
- if row.has(1) and row.str(1):
- tpl_dict[tid]["non_poly_comp_id"] = row.str(1)
- if row.has(2) and row.str(2):
- tpl_dict[tid]["non_poly_details"] = row.str(2)
- # aggregate per template for diplaying
- tpl_td = dict()
- for tpl in tpl_dict.values():
- did = f"{tpl['db_name']}-{tpl['db_acc']}"
- if did not in tpl_td:
- if tpl['db_name'] == "PDB":
- link_url = f"http://dx.doi.org/10.2210/pdb{tpl['db_acc']}/pdb"
- elif tpl['db_name'] == "PubChem":
- link_url = f"https://pubchem.ncbi.nlm.nih.gov/compound/{tpl['db_acc']}"
- else:
- link_url = None
- print(f"URLs for {tpl['db_name']} NOT SUPPORTED YET")
- if link_url:
- tpl_text = f"{tpl['db_name']}: {_make_url(tpl['db_acc'], link_url)}"
- else:
- tpl_text = f"{tpl['db_name']}: {tpl['db_acc']}"
- tpl_td[did] = {
- "tpl_text": tpl_text,
- "tpl_chains_label": [],
- "tpl_chains_auth": [],
- "tpl_chains_all_label": True,
- "tpl_non_poly_ids": []
- }
- # collect chain names
- if "tpl_label_asym_id" in tpl:
- # if here it is guaranteed to be non-empty
- tpl_td[did]["tpl_chains_label"].append(tpl["tpl_label_asym_id"])
- else:
- # if any missing, we set all to False and fall back to auth
- tpl_td[did]["tpl_chains_all_label"] = False
- if tpl["tpl_auth_asym_id"]:
- # only add non empty ones
- tpl_td[did]["tpl_chains_auth"].append(tpl["tpl_auth_asym_id"])
- # collect info on non poly if available (prefer short comp. ID)
- if "non_poly_comp_id" in tpl:
- tpl_td[did]["tpl_non_poly_ids"].append(tpl["non_poly_comp_id"])
- elif "non_poly_details" in tpl:
- tpl_td[did]["tpl_non_poly_ids"].append(tpl["non_poly_details"])
- # turn into text
- item_strings = []
- for tpl in tpl_td.values():
- item = tpl["tpl_text"]
- if tpl["tpl_chains_all_label"] and tpl["tpl_chains_label"]:
- chain_ids = sorted(set(tpl['tpl_chains_label']))
- item += f"; chains (label_asym_id): {', '.join(chain_ids)}"
- elif tpl["tpl_chains_auth"]:
- chain_ids = sorted(set(tpl['tpl_chains_auth']))
- item += f"; chains (auth_asym_id): {', '.join(chain_ids)}"
- if tpl["tpl_non_poly_ids"]:
- np_ids = sorted(set(tpl['tpl_non_poly_ids']))
- item += f"; non-polymers: {', '.join(np_ids)}"
- item_strings.append(item)
- # and into a paragraph...
- if item_strings:
- list_top = f"The following templates were used:"
- return _make_paragraph(_make_list(list_top, item_strings))
- else:
- return ""
-
-def _get_protocol_steps_text(block):
- # do it
- item_strings = []
- table = block.find("_ma_protocol_step.", ["step_id", "method_type", "?details"])
- for row in table:
- item = f"Step {row.str(0)} - {row.str(1)}"
- if row.has(2) and row.str(2):
- item += f" : {row.str(2)}"
- item_strings.append(item)
- # and into a paragraph...
- if item_strings:
- return _make_paragraph(_make_multiline_text(item_strings))
- else:
- return ""
-
-def _get_qa_acc_text(block):
- # get QA part (can reuse if already used elsewhere)
- qa_global, qa_local, qa_local_pairwise = _fetch_qa_data(block)
- # parse accompanying data
- file_contents = block.find_values("_ma_entry_associated_files.file_content")
- has_single_zip_file = len(file_contents) == 1 and \
- file_contents.str(0) == "archive with multiple files"
- if has_single_zip_file:
- # override with data from other block
- file_contents = block.find_values("_ma_associated_archive_file_details.file_content")
- has_loc_pw_in_acc = any(True for v in file_contents \
- if gemmi.cif.as_string(v) == "local pairwise QA scores")
- # put together text
- text = ""
- # text for QA
- item = ""
- if len(qa_global) > 1:
- score_strings = [f"{v['name']} of {v['value']}" for v in qa_global]
- item = f"The model has the following global model confidence scores:" \
- f" {', '.join(score_strings)}."
- elif len(qa_global) == 1:
- item = f"The model has a global model confidence score " \
- f"({qa_global[0]['name']}) of {qa_global[0]['value']}."
- if item:
- text += _make_paragraph(item)
- # lots of options for local QA string
- item = ""
- qa_local_names = ", ".join([v["name"] for v in qa_local])
- qa_loc_pw_names = ", ".join([v["name"] for v in qa_local_pairwise])
- if qa_local_names and qa_loc_pw_names and has_loc_pw_in_acc:
- item = f"Local per-residue model confidence scores ({qa_local_names}) " \
- f"are available in the model mmCIF file " \
- f"and local per-residue-pair scores ({qa_loc_pw_names}) " \
- f"in the accompanying data download."
- elif qa_local_names and qa_loc_pw_names and not has_loc_pw_in_acc:
- item = f"Local per-residue model confidence scores ({qa_local_names}) " \
- f"and local per-residue-pair scores ({qa_loc_pw_names}) " \
- f"are available in the model mmCIF file."
- elif qa_local_names and not qa_loc_pw_names:
- item = f"Local per-residue model confidence scores ({qa_local_names}) " \
- f"are available in the model mmCIF file."
- elif not qa_local_names and qa_loc_pw_names and has_loc_pw_in_acc:
- item = f"Local per-residue-pair model confidence scores ({qa_loc_pw_names}) " \
- f"are available in the accompanying data download."
- elif not qa_local_names and qa_loc_pw_names and not has_loc_pw_in_acc:
- item = f"Local per-residue-pair model confidence scores ({qa_loc_pw_names}) " \
- f"are available in the model mmCIF file."
- if item:
- text += _make_paragraph(item)
- # list files in accompanying data (if any)
- if has_single_zip_file:
- table = block.find("_ma_associated_archive_file_details.",
- ["file_path", "?file_content", "?description"])
- else:
- # NOTE: aimed to work legacy-style for Baker-models but should be obsoleted
- # -> can replace below with "table = None" in future
- table = block.find("_ma_entry_associated_files.",
- ["file_url", "?file_content", "?details"])
- if table:
- list_top = "Files in accompanying data:"
- list_items = []
- for row in table:
- item = f"{row.str(0)}"
- if row.has(1) and row.str(1):
- item += f" ({row.str(1)})"
- if row.has(2) and row.str(2):
- item += f": {row.str(2)}"
- list_items.append(item)
- text += _make_paragraph(_make_list(list_top, list_items))
- # conclude with standard pointer to ModelCIF file
- model_cif_link = _make_url(
- "ModelCIF format",
- "https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/"
- )
- text += _make_paragraph(
- f"Full details are available in {model_cif_link}" \
- f"in the model mmCIF file."
- )
- return text
-################################################################################
-
-# full parsing of file
-def _process_file(file_path):
- print(f"ModelCIF->MA for {file_path}")
- doc = gemmi.cif.read(file_path)
- block = doc.sole_block()
- print('-'*80)
- print(f"TITLE: {_get_title_text(block)}")
- print('-'*80)
- print(f"OVERVIEW:\n{'-'*80}")
- print(_get_overview_text(block))
- print('-'*80)
- print(f"MATERIAL:\n{'-'*80}")
- material_text = _get_entity_text(block) \
- + _get_sw_text(block) \
- + _get_ref_db_text(block) \
- + _get_tpl_text(block)
- print(material_text)
- print('-'*80)
- print(f"PROCEDURE:\n{'-'*80}")
- procedure_text = _get_protocol_steps_text(block) \
- + _get_qa_acc_text(block)
- print(procedure_text)
- print('-'*80)
-
-def _main():
- # get file to process
- if len(sys.argv) == 2:
- file_path = sys.argv[1]
- _process_file(file_path)
- else:
- print("USAGE: python test_modelCIF_MA.py [CIF-FILE]")
-
-if __name__ == "__main__":
- _main()
diff --git a/projects/USDA-ASFVG/README.md b/projects/USDA-ASFVG/README.md
index 60f8e4900521c6a69193ef1f014440a8ebe6719b..6afb9aabd405a576d51cdf9a4a5c74d08d21e233 100644
--- a/projects/USDA-ASFVG/README.md
+++ b/projects/USDA-ASFVG/README.md
@@ -1,8 +1,6 @@
# Modelling of African Swine Fever proteome from USDA
-Main links:
-- [Link Project in MA](https://modelarchive.org/doi/10.5452/ma-asfv-asfvg) (incl. background on project itself)
-- [Jira-story](https://jira.biozentrum.unibas.ch/browse/SCHWED-5651)
+[Link to project in ModelArchive](https://modelarchive.org/doi/10.5452/ma-asfv-asfvg) (incl. background on project itself)
Setup:
- Using AlphaFold for monomer predictions with default CASP14 setup (no PAE, no pTM, templates used and relaxation enabled)
@@ -21,6 +19,3 @@ Special features here:
Content:
- translate2modelcif.py : script to do conversion based on CoFFE-sponge-proteins project (identical Docker setup used)
-- tests folder with
- - test_modelCIF_MA.py to convert ModelCIF to content displayed in ModelArchive (needs gemmi library)
- - test.ipynb and .html for tests performed during development
diff --git a/projects/USDA-ASFVG/tests/test-220823.html b/projects/USDA-ASFVG/tests/test-220823.html
deleted file mode 100644
index 993e6ad6274cfc4b323d320f33cd7354710816ae..0000000000000000000000000000000000000000
--- a/projects/USDA-ASFVG/tests/test-220823.html
+++ /dev/null
@@ -1,16332 +0,0 @@
-<!DOCTYPE html>
-<html>
-<head><meta charset="utf-8" />
-<meta name="viewport" content="width=device-width, initial-scale=1.0">
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- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(255, 255, 255, 0.3); }
- .bp3-dark .bp3-button[class*="bp3-intent-"] .bp3-button-spinner .bp3-spinner-head{
- stroke:#8a9ba8; }
- .bp3-button:disabled::before,
- .bp3-button:disabled .bp3-icon, .bp3-button:disabled .bp3-icon-standard, .bp3-button:disabled .bp3-icon-large, .bp3-button.bp3-disabled::before,
- .bp3-button.bp3-disabled .bp3-icon, .bp3-button.bp3-disabled .bp3-icon-standard, .bp3-button.bp3-disabled .bp3-icon-large, .bp3-button[class*="bp3-intent-"]::before,
- .bp3-button[class*="bp3-intent-"] .bp3-icon, .bp3-button[class*="bp3-intent-"] .bp3-icon-standard, .bp3-button[class*="bp3-intent-"] .bp3-icon-large{
- color:inherit !important; }
- .bp3-button.bp3-minimal{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-button.bp3-minimal:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-button.bp3-minimal:active, .bp3-button.bp3-minimal.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-button.bp3-minimal:disabled, .bp3-button.bp3-minimal:disabled:hover, .bp3-button.bp3-minimal.bp3-disabled, .bp3-button.bp3-minimal.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-button.bp3-minimal:disabled.bp3-active, .bp3-button.bp3-minimal:disabled:hover.bp3-active, .bp3-button.bp3-minimal.bp3-disabled.bp3-active, .bp3-button.bp3-minimal.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-button.bp3-minimal{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-button.bp3-minimal:hover, .bp3-dark .bp3-button.bp3-minimal:active, .bp3-dark .bp3-button.bp3-minimal.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-button.bp3-minimal:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-button.bp3-minimal:active, .bp3-dark .bp3-button.bp3-minimal.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-button.bp3-minimal:disabled, .bp3-dark .bp3-button.bp3-minimal:disabled:hover, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-button.bp3-minimal:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal:disabled:hover.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-primary{
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:hover, .bp3-button.bp3-minimal.bp3-intent-primary:active, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:active, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:disabled, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-primary:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-success{
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:hover, .bp3-button.bp3-minimal.bp3-intent-success:active, .bp3-button.bp3-minimal.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:active, .bp3-button.bp3-minimal.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:disabled, .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-success:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-success .bp3-button-spinner .bp3-spinner-head{
- stroke:#0d8050; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success{
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.2);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(61, 204, 145, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-warning{
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:hover, .bp3-button.bp3-minimal.bp3-intent-warning:active, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:active, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:disabled, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(191, 115, 38, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-warning:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head{
- stroke:#bf7326; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning{
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.2);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(255, 179, 102, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-danger{
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:hover, .bp3-button.bp3-minimal.bp3-intent-danger:active, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.15);
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:active, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:disabled, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(194, 48, 48, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-danger:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-danger .bp3-button-spinner .bp3-spinner-head{
- stroke:#c23030; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger{
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.2);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(255, 115, 115, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-outlined{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- border:1px solid rgba(24, 32, 38, 0.2);
- -webkit-box-sizing:border-box;
- box-sizing:border-box; }
- .bp3-button.bp3-outlined:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-button.bp3-outlined:active, .bp3-button.bp3-outlined.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-button.bp3-outlined:disabled, .bp3-button.bp3-outlined:disabled:hover, .bp3-button.bp3-outlined.bp3-disabled, .bp3-button.bp3-outlined.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-button.bp3-outlined:disabled.bp3-active, .bp3-button.bp3-outlined:disabled:hover.bp3-active, .bp3-button.bp3-outlined.bp3-disabled.bp3-active, .bp3-button.bp3-outlined.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-button.bp3-outlined{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-button.bp3-outlined:hover, .bp3-dark .bp3-button.bp3-outlined:active, .bp3-dark .bp3-button.bp3-outlined.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-button.bp3-outlined:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-button.bp3-outlined:active, .bp3-dark .bp3-button.bp3-outlined.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-button.bp3-outlined:disabled, .bp3-dark .bp3-button.bp3-outlined:disabled:hover, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-button.bp3-outlined:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined:disabled:hover.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-primary{
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:hover, .bp3-button.bp3-outlined.bp3-intent-primary:active, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:active, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-primary:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-success{
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:hover, .bp3-button.bp3-outlined.bp3-intent-success:active, .bp3-button.bp3-outlined.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:active, .bp3-button.bp3-outlined.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-success:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-success .bp3-button-spinner .bp3-spinner-head{
- stroke:#0d8050; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success{
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.2);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(61, 204, 145, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-warning{
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:hover, .bp3-button.bp3-outlined.bp3-intent-warning:active, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:active, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(191, 115, 38, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-warning:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head{
- stroke:#bf7326; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning{
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.2);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(255, 179, 102, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-danger{
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:hover, .bp3-button.bp3-outlined.bp3-intent-danger:active, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.15);
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:active, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(194, 48, 48, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-danger:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-danger .bp3-button-spinner .bp3-spinner-head{
- stroke:#c23030; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger{
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.2);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(255, 115, 115, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-outlined:disabled, .bp3-button.bp3-outlined.bp3-disabled, .bp3-button.bp3-outlined:disabled:hover, .bp3-button.bp3-outlined.bp3-disabled:hover{
- border-color:rgba(92, 112, 128, 0.1); }
- .bp3-dark .bp3-button.bp3-outlined{
- border-color:rgba(255, 255, 255, 0.4); }
- .bp3-dark .bp3-button.bp3-outlined:disabled, .bp3-dark .bp3-button.bp3-outlined:disabled:hover, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled:hover{
- border-color:rgba(255, 255, 255, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-primary{
- border-color:rgba(16, 107, 163, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- border-color:rgba(16, 107, 163, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary{
- border-color:rgba(72, 175, 240, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- border-color:rgba(72, 175, 240, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-success{
- border-color:rgba(13, 128, 80, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- border-color:rgba(13, 128, 80, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success{
- border-color:rgba(61, 204, 145, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- border-color:rgba(61, 204, 145, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-warning{
- border-color:rgba(191, 115, 38, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- border-color:rgba(191, 115, 38, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning{
- border-color:rgba(255, 179, 102, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- border-color:rgba(255, 179, 102, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-danger{
- border-color:rgba(194, 48, 48, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- border-color:rgba(194, 48, 48, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger{
- border-color:rgba(255, 115, 115, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- border-color:rgba(255, 115, 115, 0.2); }
-
-a.bp3-button{
- text-align:center;
- text-decoration:none;
- -webkit-transition:none;
- transition:none; }
- a.bp3-button, a.bp3-button:hover, a.bp3-button:active{
- color:#182026; }
- a.bp3-button.bp3-disabled{
- color:rgba(92, 112, 128, 0.6); }
-
-.bp3-button-text{
- -webkit-box-flex:0;
- -ms-flex:0 1 auto;
- flex:0 1 auto; }
-
-.bp3-button.bp3-align-left .bp3-button-text, .bp3-button.bp3-align-right .bp3-button-text,
-.bp3-button-group.bp3-align-left .bp3-button-text,
-.bp3-button-group.bp3-align-right .bp3-button-text{
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto; }
-.bp3-button-group{
- display:-webkit-inline-box;
- display:-ms-inline-flexbox;
- display:inline-flex; }
- .bp3-button-group .bp3-button{
- -webkit-box-flex:0;
- -ms-flex:0 0 auto;
- flex:0 0 auto;
- position:relative;
- z-index:4; }
- .bp3-button-group .bp3-button:focus{
- z-index:5; }
- .bp3-button-group .bp3-button:hover{
- z-index:6; }
- .bp3-button-group .bp3-button:active, .bp3-button-group .bp3-button.bp3-active{
- z-index:7; }
- .bp3-button-group .bp3-button:disabled, .bp3-button-group .bp3-button.bp3-disabled{
- z-index:3; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]{
- z-index:9; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:focus{
- z-index:10; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:hover{
- z-index:11; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:active, .bp3-button-group .bp3-button[class*="bp3-intent-"].bp3-active{
- z-index:12; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:disabled, .bp3-button-group .bp3-button[class*="bp3-intent-"].bp3-disabled{
- z-index:8; }
- .bp3-button-group:not(.bp3-minimal) > .bp3-popover-wrapper:not(:first-child) .bp3-button,
- .bp3-button-group:not(.bp3-minimal) > .bp3-button:not(:first-child){
- border-bottom-left-radius:0;
- border-top-left-radius:0; }
- .bp3-button-group:not(.bp3-minimal) > .bp3-popover-wrapper:not(:last-child) .bp3-button,
- .bp3-button-group:not(.bp3-minimal) > .bp3-button:not(:last-child){
- border-bottom-right-radius:0;
- border-top-right-radius:0;
- margin-right:-1px; }
- .bp3-button-group.bp3-minimal .bp3-button{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-button-group.bp3-minimal .bp3-button:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-button-group.bp3-minimal .bp3-button:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-button-group.bp3-minimal .bp3-button:disabled, .bp3-button-group.bp3-minimal .bp3-button:disabled:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-button-group.bp3-minimal .bp3-button:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button:disabled:hover.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:hover, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled:hover, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled:hover.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary{
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success{
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success .bp3-button-spinner .bp3-spinner-head{
- stroke:#0d8050; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success{
- color:#3dcc91; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.2);
- color:#3dcc91; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#3dcc91; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(61, 204, 145, 0.5); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning{
- color:#bf7326; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#bf7326; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#bf7326; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(191, 115, 38, 0.5); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head{
- stroke:#bf7326; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning{
- color:#ffb366; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.2);
- color:#ffb366; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#ffb366; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(255, 179, 102, 0.5); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning:disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger{
- color:#c23030; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#c23030; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.15);
- color:#c23030; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#c23030; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(194, 48, 48, 0.5); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger .bp3-button-spinner .bp3-spinner-head{
- stroke:#c23030; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger{
- color:#ff7373; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.2);
- color:#ff7373; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#ff7373; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(255, 115, 115, 0.5); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger:disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button-group .bp3-popover-wrapper,
- .bp3-button-group .bp3-popover-target{
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto; }
- .bp3-button-group.bp3-fill{
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- width:100%; }
- .bp3-button-group .bp3-button.bp3-fill,
- .bp3-button-group.bp3-fill .bp3-button:not(.bp3-fixed){
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto; }
- .bp3-button-group.bp3-vertical{
- -webkit-box-align:stretch;
- -ms-flex-align:stretch;
- align-items:stretch;
- -webkit-box-orient:vertical;
- -webkit-box-direction:normal;
- -ms-flex-direction:column;
- flex-direction:column;
- vertical-align:top; }
- .bp3-button-group.bp3-vertical.bp3-fill{
- height:100%;
- width:unset; }
- .bp3-button-group.bp3-vertical .bp3-button{
- margin-right:0 !important;
- width:100%; }
- .bp3-button-group.bp3-vertical:not(.bp3-minimal) > .bp3-popover-wrapper:first-child .bp3-button,
- .bp3-button-group.bp3-vertical:not(.bp3-minimal) > .bp3-button:first-child{
- border-radius:3px 3px 0 0; }
- .bp3-button-group.bp3-vertical:not(.bp3-minimal) > .bp3-popover-wrapper:last-child .bp3-button,
- .bp3-button-group.bp3-vertical:not(.bp3-minimal) > .bp3-button:last-child{
- border-radius:0 0 3px 3px; }
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- background-color:rgba(167, 182, 194, 0.6); }
- .bp3-active.bp3-dialog-step-viewed .bp3-dialog-step-icon{
- background-color:#2b95d6; }
- .bp3-dialog-step-viewed .bp3-dialog-step-icon{
- background-color:#8a9ba8; }
-
-.bp3-dialog-step-title{
- color:rgba(92, 112, 128, 0.6);
- -webkit-box-flex:1;
- -ms-flex:1;
- flex:1;
- padding-left:10px; }
- .bp3-dark .bp3-dialog-step-title{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-active.bp3-dialog-step-viewed .bp3-dialog-step-title{
- color:#2b95d6; }
- .bp3-dialog-step-viewed:not(.bp3-active) .bp3-dialog-step-title{
- color:#182026; }
- .bp3-dark .bp3-dialog-step-viewed:not(.bp3-active) .bp3-dialog-step-title{
- color:#f5f8fa; }
-.bp3-drawer{
- background:#ffffff;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 4px 8px rgba(16, 22, 26, 0.2), 0 18px 46px 6px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 4px 8px rgba(16, 22, 26, 0.2), 0 18px 46px 6px rgba(16, 22, 26, 0.2);
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- -webkit-box-orient:vertical;
- -webkit-box-direction:normal;
- -ms-flex-direction:column;
- flex-direction:column;
- margin:0;
- padding:0; }
- .bp3-drawer:focus{
- outline:0; }
- .bp3-drawer.bp3-position-top{
- height:50%;
- left:0;
- right:0;
- top:0; }
- .bp3-drawer.bp3-position-top.bp3-overlay-enter, .bp3-drawer.bp3-position-top.bp3-overlay-appear{
- -webkit-transform:translateY(-100%);
- transform:translateY(-100%); }
- .bp3-drawer.bp3-position-top.bp3-overlay-enter-active, .bp3-drawer.bp3-position-top.bp3-overlay-appear-active{
- -webkit-transform:translateY(0);
- transform:translateY(0);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:200ms;
- transition-duration:200ms;
- -webkit-transition-property:-webkit-transform;
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- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer.bp3-position-top.bp3-overlay-exit{
- -webkit-transform:translateY(0);
- transform:translateY(0); }
- .bp3-drawer.bp3-position-top.bp3-overlay-exit-active{
- -webkit-transform:translateY(-100%);
- transform:translateY(-100%);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:100ms;
- transition-duration:100ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer.bp3-position-bottom{
- bottom:0;
- height:50%;
- left:0;
- right:0; }
- .bp3-drawer.bp3-position-bottom.bp3-overlay-enter, .bp3-drawer.bp3-position-bottom.bp3-overlay-appear{
- -webkit-transform:translateY(100%);
- transform:translateY(100%); }
- .bp3-drawer.bp3-position-bottom.bp3-overlay-enter-active, .bp3-drawer.bp3-position-bottom.bp3-overlay-appear-active{
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- transform:translateY(0);
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- transition-delay:0;
- -webkit-transition-duration:200ms;
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- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer.bp3-position-bottom.bp3-overlay-exit{
- -webkit-transform:translateY(0);
- transform:translateY(0); }
- .bp3-drawer.bp3-position-bottom.bp3-overlay-exit-active{
- -webkit-transform:translateY(100%);
- transform:translateY(100%);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:100ms;
- transition-duration:100ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer.bp3-position-left{
- bottom:0;
- left:0;
- top:0;
- width:50%; }
- .bp3-drawer.bp3-position-left.bp3-overlay-enter, .bp3-drawer.bp3-position-left.bp3-overlay-appear{
- -webkit-transform:translateX(-100%);
- transform:translateX(-100%); }
- .bp3-drawer.bp3-position-left.bp3-overlay-enter-active, .bp3-drawer.bp3-position-left.bp3-overlay-appear-active{
- -webkit-transform:translateX(0);
- transform:translateX(0);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:200ms;
- transition-duration:200ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer.bp3-position-left.bp3-overlay-exit{
- -webkit-transform:translateX(0);
- transform:translateX(0); }
- .bp3-drawer.bp3-position-left.bp3-overlay-exit-active{
- -webkit-transform:translateX(-100%);
- transform:translateX(-100%);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:100ms;
- transition-duration:100ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer.bp3-position-right{
- bottom:0;
- right:0;
- top:0;
- width:50%; }
- .bp3-drawer.bp3-position-right.bp3-overlay-enter, .bp3-drawer.bp3-position-right.bp3-overlay-appear{
- -webkit-transform:translateX(100%);
- transform:translateX(100%); }
- .bp3-drawer.bp3-position-right.bp3-overlay-enter-active, .bp3-drawer.bp3-position-right.bp3-overlay-appear-active{
- -webkit-transform:translateX(0);
- transform:translateX(0);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:200ms;
- transition-duration:200ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer.bp3-position-right.bp3-overlay-exit{
- -webkit-transform:translateX(0);
- transform:translateX(0); }
- .bp3-drawer.bp3-position-right.bp3-overlay-exit-active{
- -webkit-transform:translateX(100%);
- transform:translateX(100%);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:100ms;
- transition-duration:100ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right):not(.bp3-vertical){
- bottom:0;
- right:0;
- top:0;
- width:50%; }
- .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right):not(.bp3-vertical).bp3-overlay-enter, .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right):not(.bp3-vertical).bp3-overlay-appear{
- -webkit-transform:translateX(100%);
- transform:translateX(100%); }
- .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right):not(.bp3-vertical).bp3-overlay-enter-active, .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right):not(.bp3-vertical).bp3-overlay-appear-active{
- -webkit-transform:translateX(0);
- transform:translateX(0);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:200ms;
- transition-duration:200ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right):not(.bp3-vertical).bp3-overlay-exit{
- -webkit-transform:translateX(0);
- transform:translateX(0); }
- .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right):not(.bp3-vertical).bp3-overlay-exit-active{
- -webkit-transform:translateX(100%);
- transform:translateX(100%);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:100ms;
- transition-duration:100ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right).bp3-vertical{
- bottom:0;
- height:50%;
- left:0;
- right:0; }
- .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right).bp3-vertical.bp3-overlay-enter, .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right).bp3-vertical.bp3-overlay-appear{
- -webkit-transform:translateY(100%);
- transform:translateY(100%); }
- .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right).bp3-vertical.bp3-overlay-enter-active, .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right).bp3-vertical.bp3-overlay-appear-active{
- -webkit-transform:translateY(0);
- transform:translateY(0);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:200ms;
- transition-duration:200ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right).bp3-vertical.bp3-overlay-exit{
- -webkit-transform:translateY(0);
- transform:translateY(0); }
- .bp3-drawer:not(.bp3-position-top):not(.bp3-position-bottom):not(.bp3-position-left):not(
- .bp3-position-right).bp3-vertical.bp3-overlay-exit-active{
- -webkit-transform:translateY(100%);
- transform:translateY(100%);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:100ms;
- transition-duration:100ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-drawer.bp3-dark,
- .bp3-dark .bp3-drawer{
- background:#30404d;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 4px 8px rgba(16, 22, 26, 0.4), 0 18px 46px 6px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 4px 8px rgba(16, 22, 26, 0.4), 0 18px 46px 6px rgba(16, 22, 26, 0.4);
- color:#f5f8fa; }
-
-.bp3-drawer-header{
- -webkit-box-align:center;
- -ms-flex-align:center;
- align-items:center;
- border-radius:0;
- -webkit-box-shadow:0 1px 0 rgba(16, 22, 26, 0.15);
- box-shadow:0 1px 0 rgba(16, 22, 26, 0.15);
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- -webkit-box-flex:0;
- -ms-flex:0 0 auto;
- flex:0 0 auto;
- min-height:40px;
- padding:5px;
- padding-left:20px;
- position:relative; }
- .bp3-drawer-header .bp3-icon-large,
- .bp3-drawer-header .bp3-icon{
- color:#5c7080;
- -webkit-box-flex:0;
- -ms-flex:0 0 auto;
- flex:0 0 auto;
- margin-right:10px; }
- .bp3-drawer-header .bp3-heading{
- overflow:hidden;
- text-overflow:ellipsis;
- white-space:nowrap;
- word-wrap:normal;
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto;
- line-height:inherit;
- margin:0; }
- .bp3-drawer-header .bp3-heading:last-child{
- margin-right:20px; }
- .bp3-dark .bp3-drawer-header{
- -webkit-box-shadow:0 1px 0 rgba(16, 22, 26, 0.4);
- box-shadow:0 1px 0 rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-drawer-header .bp3-icon-large,
- .bp3-dark .bp3-drawer-header .bp3-icon{
- color:#a7b6c2; }
-
-.bp3-drawer-body{
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto;
- line-height:18px;
- overflow:auto; }
-
-.bp3-drawer-footer{
- -webkit-box-shadow:inset 0 1px 0 rgba(16, 22, 26, 0.15);
- box-shadow:inset 0 1px 0 rgba(16, 22, 26, 0.15);
- -webkit-box-flex:0;
- -ms-flex:0 0 auto;
- flex:0 0 auto;
- padding:10px 20px;
- position:relative; }
- .bp3-dark .bp3-drawer-footer{
- -webkit-box-shadow:inset 0 1px 0 rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 1px 0 rgba(16, 22, 26, 0.4); }
-.bp3-editable-text{
- cursor:text;
- display:inline-block;
- max-width:100%;
- position:relative;
- vertical-align:top;
- white-space:nowrap; }
- .bp3-editable-text::before{
- bottom:-3px;
- left:-3px;
- position:absolute;
- right:-3px;
- top:-3px;
- border-radius:3px;
- content:"";
- -webkit-transition:background-color 100ms cubic-bezier(0.4, 1, 0.75, 0.9), -webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:background-color 100ms cubic-bezier(0.4, 1, 0.75, 0.9), -webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:background-color 100ms cubic-bezier(0.4, 1, 0.75, 0.9), box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:background-color 100ms cubic-bezier(0.4, 1, 0.75, 0.9), box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9), -webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-editable-text:hover::before{
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.15);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.15); }
- .bp3-editable-text.bp3-editable-text-editing::before{
- background-color:#ffffff;
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-editable-text.bp3-disabled::before{
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- box-shadow:none; }
- .bp3-editable-text.bp3-intent-primary .bp3-editable-text-input,
- .bp3-editable-text.bp3-intent-primary .bp3-editable-text-content{
- color:#137cbd; }
- .bp3-editable-text.bp3-intent-primary:hover::before{
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(19, 124, 189, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(19, 124, 189, 0.4); }
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- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-editable-text.bp3-intent-success .bp3-editable-text-input,
- .bp3-editable-text.bp3-intent-success .bp3-editable-text-content{
- color:#0f9960; }
- .bp3-editable-text.bp3-intent-success:hover::before{
- -webkit-box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px rgba(15, 153, 96, 0.4);
- box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px rgba(15, 153, 96, 0.4); }
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- -webkit-box-shadow:0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
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- .bp3-editable-text.bp3-intent-warning .bp3-editable-text-content{
- color:#d9822b; }
- .bp3-editable-text.bp3-intent-warning:hover::before{
- -webkit-box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px rgba(217, 130, 43, 0.4);
- box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px rgba(217, 130, 43, 0.4); }
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- -webkit-box-shadow:0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-editable-text.bp3-intent-danger .bp3-editable-text-input,
- .bp3-editable-text.bp3-intent-danger .bp3-editable-text-content{
- color:#db3737; }
- .bp3-editable-text.bp3-intent-danger:hover::before{
- -webkit-box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px rgba(219, 55, 55, 0.4);
- box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px rgba(219, 55, 55, 0.4); }
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- box-shadow:0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-editable-text:hover::before{
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(255, 255, 255, 0.15);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(255, 255, 255, 0.15); }
- .bp3-dark .bp3-editable-text.bp3-editable-text-editing::before{
- background-color:rgba(16, 22, 26, 0.3);
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-editable-text.bp3-disabled::before{
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- box-shadow:none; }
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-.bp3-editable-text-input{
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-.bp3-editable-text-content{
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-.bp3-editable-text.bp3-multiline{
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- margin-right:-1px; }
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- border-radius:3px 3px 0 0;
- margin-top:0; }
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- border-radius:0 0 3px 3px; }
-.bp3-control{
- cursor:pointer;
- display:block;
- margin-bottom:10px;
- position:relative;
- text-transform:none; }
- .bp3-control input:checked ~ .bp3-control-indicator{
- background-color:#137cbd;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.1)), to(rgba(255, 255, 255, 0)));
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- background-color:#106ba3;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2); }
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- background:#0e5a8a;
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- background:rgba(19, 124, 189, 0.5);
- -webkit-box-shadow:none;
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- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
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- background-color:#106ba3;
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- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
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- background:rgba(14, 90, 138, 0.5);
- -webkit-box-shadow:none;
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- padding-left:26px; }
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- color:rgba(92, 112, 128, 0.6);
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- margin-right:20px; }
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- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.8)), to(rgba(255, 255, 255, 0)));
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- cursor:pointer;
- display:inline-block;
- font-size:16px;
- height:1em;
- margin-right:10px;
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- position:relative;
- -webkit-user-select:none;
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- user-select:none;
- vertical-align:middle;
- width:1em; }
- .bp3-control .bp3-control-indicator::before{
- content:"";
- display:block;
- height:1em;
- width:1em; }
- .bp3-control:hover .bp3-control-indicator{
- background-color:#ebf1f5; }
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- background:#d8e1e8;
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- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
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- background:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
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- cursor:not-allowed; }
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- outline-offset:2px;
- -moz-outline-radius:6px; }
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- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.1)), to(rgba(255, 255, 255, 0)));
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- color:#ffffff; }
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- background-color:#106ba3;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
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- .bp3-control.bp3-checkbox input:disabled:indeterminate ~ .bp3-control-indicator{
- background:rgba(19, 124, 189, 0.5);
- -webkit-box-shadow:none;
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- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-checkbox:hover input:indeterminate ~ .bp3-control-indicator{
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- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
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- background-color:#0e5a8a;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-control.bp3-checkbox input:disabled:indeterminate ~ .bp3-control-indicator{
- background:rgba(14, 90, 138, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-control.bp3-checkbox .bp3-control-indicator{
- border-radius:3px; }
- .bp3-control.bp3-checkbox input:checked ~ .bp3-control-indicator::before{
- background-image:url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16'%3e%3cpath fill-rule='evenodd' clip-rule='evenodd' d='M12 5c-.28 0-.53.11-.71.29L7 9.59l-2.29-2.3a1.003 1.003 0 00-1.42 1.42l3 3c.18.18.43.29.71.29s.53-.11.71-.29l5-5A1.003 1.003 0 0012 5z' fill='white'/%3e%3c/svg%3e"); }
- .bp3-control.bp3-checkbox input:indeterminate ~ .bp3-control-indicator::before{
- background-image:url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16'%3e%3cpath fill-rule='evenodd' clip-rule='evenodd' d='M11 7H5c-.55 0-1 .45-1 1s.45 1 1 1h6c.55 0 1-.45 1-1s-.45-1-1-1z' fill='white'/%3e%3c/svg%3e"); }
- .bp3-control.bp3-radio .bp3-control-indicator{
- border-radius:50%; }
- .bp3-control.bp3-radio input:checked ~ .bp3-control-indicator::before{
- background-image:radial-gradient(#ffffff, #ffffff 28%, transparent 32%); }
- .bp3-control.bp3-radio input:checked:disabled ~ .bp3-control-indicator::before{
- opacity:0.5; }
- .bp3-control.bp3-radio input:focus ~ .bp3-control-indicator{
- -moz-outline-radius:16px; }
- .bp3-control.bp3-switch input ~ .bp3-control-indicator{
- background:rgba(167, 182, 194, 0.5); }
- .bp3-control.bp3-switch:hover input ~ .bp3-control-indicator{
- background:rgba(115, 134, 148, 0.5); }
- .bp3-control.bp3-switch input:not(:disabled):active ~ .bp3-control-indicator{
- background:rgba(92, 112, 128, 0.5); }
- .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator{
- background:rgba(206, 217, 224, 0.5); }
- .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator::before{
- background:rgba(255, 255, 255, 0.8); }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator{
- background:#137cbd; }
- .bp3-control.bp3-switch:hover input:checked ~ .bp3-control-indicator{
- background:#106ba3; }
- .bp3-control.bp3-switch input:checked:not(:disabled):active ~ .bp3-control-indicator{
- background:#0e5a8a; }
- .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator{
- background:rgba(19, 124, 189, 0.5); }
- .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator::before{
- background:rgba(255, 255, 255, 0.8); }
- .bp3-control.bp3-switch:not(.bp3-align-right){
- padding-left:38px; }
- .bp3-control.bp3-switch:not(.bp3-align-right) .bp3-control-indicator{
- margin-left:-38px; }
- .bp3-control.bp3-switch.bp3-align-right{
- padding-right:38px; }
- .bp3-control.bp3-switch.bp3-align-right .bp3-control-indicator{
- margin-right:-38px; }
- .bp3-control.bp3-switch .bp3-control-indicator{
- border:none;
- border-radius:1.75em;
- -webkit-box-shadow:none !important;
- box-shadow:none !important;
- min-width:1.75em;
- -webkit-transition:background-color 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:background-color 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- width:auto; }
- .bp3-control.bp3-switch .bp3-control-indicator::before{
- background:#ffffff;
- border-radius:50%;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 1px 1px rgba(16, 22, 26, 0.2);
- height:calc(1em - 4px);
- left:0;
- margin:2px;
- position:absolute;
- -webkit-transition:left 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:left 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- width:calc(1em - 4px); }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator::before{
- left:calc(100% - 1em); }
- .bp3-control.bp3-switch.bp3-large:not(.bp3-align-right){
- padding-left:45px; }
- .bp3-control.bp3-switch.bp3-large:not(.bp3-align-right) .bp3-control-indicator{
- margin-left:-45px; }
- .bp3-control.bp3-switch.bp3-large.bp3-align-right{
- padding-right:45px; }
- .bp3-control.bp3-switch.bp3-large.bp3-align-right .bp3-control-indicator{
- margin-right:-45px; }
- .bp3-dark .bp3-control.bp3-switch input ~ .bp3-control-indicator{
- background:rgba(16, 22, 26, 0.5); }
- .bp3-dark .bp3-control.bp3-switch:hover input ~ .bp3-control-indicator{
- background:rgba(16, 22, 26, 0.7); }
- .bp3-dark .bp3-control.bp3-switch input:not(:disabled):active ~ .bp3-control-indicator{
- background:rgba(16, 22, 26, 0.9); }
- .bp3-dark .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator{
- background:rgba(57, 75, 89, 0.5); }
- .bp3-dark .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator::before{
- background:rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator{
- background:#137cbd; }
- .bp3-dark .bp3-control.bp3-switch:hover input:checked ~ .bp3-control-indicator{
- background:#106ba3; }
- .bp3-dark .bp3-control.bp3-switch input:checked:not(:disabled):active ~ .bp3-control-indicator{
- background:#0e5a8a; }
- .bp3-dark .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator{
- background:rgba(14, 90, 138, 0.5); }
- .bp3-dark .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator::before{
- background:rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-switch .bp3-control-indicator::before{
- background:#394b59;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator::before{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-control.bp3-switch .bp3-switch-inner-text{
- font-size:0.7em;
- text-align:center; }
- .bp3-control.bp3-switch .bp3-control-indicator-child:first-child{
- line-height:0;
- margin-left:0.5em;
- margin-right:1.2em;
- visibility:hidden; }
- .bp3-control.bp3-switch .bp3-control-indicator-child:last-child{
- line-height:1em;
- margin-left:1.2em;
- margin-right:0.5em;
- visibility:visible; }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator .bp3-control-indicator-child:first-child{
- line-height:1em;
- visibility:visible; }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator .bp3-control-indicator-child:last-child{
- line-height:0;
- visibility:hidden; }
- .bp3-dark .bp3-control{
- color:#f5f8fa; }
- .bp3-dark .bp3-control.bp3-disabled{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-control .bp3-control-indicator{
- background-color:#394b59;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.05)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.05), rgba(255, 255, 255, 0));
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control:hover .bp3-control-indicator{
- background-color:#30404d; }
- .bp3-dark .bp3-control input:not(:disabled):active ~ .bp3-control-indicator{
- background:#202b33;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-control input:disabled ~ .bp3-control-indicator{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- cursor:not-allowed; }
- .bp3-dark .bp3-control.bp3-checkbox input:disabled:checked ~ .bp3-control-indicator, .bp3-dark .bp3-control.bp3-checkbox input:disabled:indeterminate ~ .bp3-control-indicator{
- color:rgba(167, 182, 194, 0.6); }
-.bp3-file-input{
- cursor:pointer;
- display:inline-block;
- height:30px;
- position:relative; }
- .bp3-file-input input{
- margin:0;
- min-width:200px;
- opacity:0; }
- .bp3-file-input input:disabled + .bp3-file-upload-input,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input{
- background:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- resize:none; }
- .bp3-file-input input:disabled + .bp3-file-upload-input::after,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after{
- background-color:rgba(206, 217, 224, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- outline:none; }
- .bp3-file-input input:disabled + .bp3-file-upload-input::after.bp3-active, .bp3-file-input input:disabled + .bp3-file-upload-input::after.bp3-active:hover,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after.bp3-active,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after.bp3-active:hover{
- background:rgba(206, 217, 224, 0.7); }
- .bp3-dark .bp3-file-input input:disabled + .bp3-file-upload-input, .bp3-dark
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-input input:disabled + .bp3-file-upload-input::after, .bp3-dark
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after{
- background-color:rgba(57, 75, 89, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-input input:disabled + .bp3-file-upload-input::after.bp3-active, .bp3-dark
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after.bp3-active{
- background:rgba(57, 75, 89, 0.7); }
- .bp3-file-input.bp3-file-input-has-selection .bp3-file-upload-input{
- color:#182026; }
- .bp3-dark .bp3-file-input.bp3-file-input-has-selection .bp3-file-upload-input{
- color:#f5f8fa; }
- .bp3-file-input.bp3-fill{
- width:100%; }
- .bp3-file-input.bp3-large,
- .bp3-large .bp3-file-input{
- height:40px; }
- .bp3-file-input .bp3-file-upload-input-custom-text::after{
- content:attr(bp3-button-text); }
-
-.bp3-file-upload-input{
- -webkit-appearance:none;
- -moz-appearance:none;
- appearance:none;
- background:#ffffff;
- border:none;
- border-radius:3px;
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- color:#182026;
- font-size:14px;
- font-weight:400;
- height:30px;
- line-height:30px;
- outline:none;
- padding:0 10px;
- -webkit-transition:-webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:-webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9), -webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- vertical-align:middle;
- overflow:hidden;
- text-overflow:ellipsis;
- white-space:nowrap;
- word-wrap:normal;
- color:rgba(92, 112, 128, 0.6);
- left:0;
- padding-right:80px;
- position:absolute;
- right:0;
- top:0;
- -webkit-user-select:none;
- -moz-user-select:none;
- -ms-user-select:none;
- user-select:none; }
- .bp3-file-upload-input::-webkit-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input::-moz-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input:-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input::-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input::placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input:focus, .bp3-file-upload-input.bp3-active{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-file-upload-input[type="search"], .bp3-file-upload-input.bp3-round{
- border-radius:30px;
- -webkit-box-sizing:border-box;
- box-sizing:border-box;
- padding-left:10px; }
- .bp3-file-upload-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.15);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.15); }
- .bp3-file-upload-input:disabled, .bp3-file-upload-input.bp3-disabled{
- background:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- resize:none; }
- .bp3-file-upload-input::after{
- background-color:#f5f8fa;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.8)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.8), rgba(255, 255, 255, 0));
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- color:#182026;
- min-height:24px;
- min-width:24px;
- overflow:hidden;
- text-overflow:ellipsis;
- white-space:nowrap;
- word-wrap:normal;
- border-radius:3px;
- content:"Browse";
- line-height:24px;
- margin:3px;
- position:absolute;
- right:0;
- text-align:center;
- top:0;
- width:70px; }
- .bp3-file-upload-input::after:hover{
- background-clip:padding-box;
- background-color:#ebf1f5;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
- .bp3-file-upload-input::after:active, .bp3-file-upload-input::after.bp3-active{
- background-color:#d8e1e8;
- background-image:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-file-upload-input::after:disabled, .bp3-file-upload-input::after.bp3-disabled{
- background-color:rgba(206, 217, 224, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- outline:none; }
- .bp3-file-upload-input::after:disabled.bp3-active, .bp3-file-upload-input::after:disabled.bp3-active:hover, .bp3-file-upload-input::after.bp3-disabled.bp3-active, .bp3-file-upload-input::after.bp3-disabled.bp3-active:hover{
- background:rgba(206, 217, 224, 0.7); }
- .bp3-file-upload-input:hover::after{
- background-clip:padding-box;
- background-color:#ebf1f5;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
- .bp3-file-upload-input:active::after{
- background-color:#d8e1e8;
- background-image:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-large .bp3-file-upload-input{
- font-size:16px;
- height:40px;
- line-height:40px;
- padding-right:95px; }
- .bp3-large .bp3-file-upload-input[type="search"], .bp3-large .bp3-file-upload-input.bp3-round{
- padding:0 15px; }
- .bp3-large .bp3-file-upload-input::after{
- min-height:30px;
- min-width:30px;
- line-height:30px;
- margin:5px;
- width:85px; }
- .bp3-dark .bp3-file-upload-input{
- background:rgba(16, 22, 26, 0.3);
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::-webkit-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::-moz-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input:-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-file-upload-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-file-upload-input:disabled, .bp3-dark .bp3-file-upload-input.bp3-disabled{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::after{
- background-color:#394b59;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.05)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.05), rgba(255, 255, 255, 0));
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa; }
- .bp3-dark .bp3-file-upload-input::after:hover, .bp3-dark .bp3-file-upload-input::after:active, .bp3-dark .bp3-file-upload-input::after.bp3-active{
- color:#f5f8fa; }
- .bp3-dark .bp3-file-upload-input::after:hover{
- background-color:#30404d;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-file-upload-input::after:active, .bp3-dark .bp3-file-upload-input::after.bp3-active{
- background-color:#202b33;
- background-image:none;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-file-upload-input::after:disabled, .bp3-dark .bp3-file-upload-input::after.bp3-disabled{
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- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
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- padding-left:10px; }
- .bp3-input[readonly]{
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- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.15); }
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- .bp3-input.bp3-fill{
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- -ms-flex:1 1 auto;
- flex:1 1 auto;
- width:100%; }
- .bp3-dark .bp3-input{
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- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
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- .bp3-dark .bp3-input::-ms-input-placeholder{
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- .bp3-dark .bp3-input:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input:disabled, .bp3-dark .bp3-input.bp3-disabled{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-input.bp3-intent-primary{
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-primary:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-primary[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #137cbd;
- box-shadow:inset 0 0 0 1px #137cbd; }
- .bp3-input.bp3-intent-primary:disabled, .bp3-input.bp3-intent-primary.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-primary{
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-primary:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-primary[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #137cbd;
- box-shadow:inset 0 0 0 1px #137cbd; }
- .bp3-dark .bp3-input.bp3-intent-primary:disabled, .bp3-dark .bp3-input.bp3-intent-primary.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input.bp3-intent-success{
- -webkit-box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-success:focus{
- -webkit-box-shadow:0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-success[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #0f9960;
- box-shadow:inset 0 0 0 1px #0f9960; }
- .bp3-input.bp3-intent-success:disabled, .bp3-input.bp3-intent-success.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-success{
- -webkit-box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-success:focus{
- -webkit-box-shadow:0 0 0 1px #0f9960, 0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #0f9960, 0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-success[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #0f9960;
- box-shadow:inset 0 0 0 1px #0f9960; }
- .bp3-dark .bp3-input.bp3-intent-success:disabled, .bp3-dark .bp3-input.bp3-intent-success.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input.bp3-intent-warning{
- -webkit-box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-warning:focus{
- -webkit-box-shadow:0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-warning[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #d9822b;
- box-shadow:inset 0 0 0 1px #d9822b; }
- .bp3-input.bp3-intent-warning:disabled, .bp3-input.bp3-intent-warning.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-warning{
- -webkit-box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-warning:focus{
- -webkit-box-shadow:0 0 0 1px #d9822b, 0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #d9822b, 0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-warning[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #d9822b;
- box-shadow:inset 0 0 0 1px #d9822b; }
- .bp3-dark .bp3-input.bp3-intent-warning:disabled, .bp3-dark .bp3-input.bp3-intent-warning.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input.bp3-intent-danger{
- -webkit-box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-danger:focus{
- -webkit-box-shadow:0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-danger[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #db3737;
- box-shadow:inset 0 0 0 1px #db3737; }
- .bp3-input.bp3-intent-danger:disabled, .bp3-input.bp3-intent-danger.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-danger{
- -webkit-box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-danger:focus{
- -webkit-box-shadow:0 0 0 1px #db3737, 0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #db3737, 0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-danger[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #db3737;
- box-shadow:inset 0 0 0 1px #db3737; }
- .bp3-dark .bp3-input.bp3-intent-danger:disabled, .bp3-dark .bp3-input.bp3-intent-danger.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input::-ms-clear{
- display:none; }
-textarea.bp3-input{
- max-width:100%;
- padding:10px; }
- textarea.bp3-input, textarea.bp3-input.bp3-large, textarea.bp3-input.bp3-small{
- height:auto;
- line-height:inherit; }
- textarea.bp3-input.bp3-small{
- padding:8px; }
- .bp3-dark textarea.bp3-input{
- background:rgba(16, 22, 26, 0.3);
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa; }
- .bp3-dark textarea.bp3-input::-webkit-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input::-moz-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input:-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input::-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input::placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark textarea.bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark textarea.bp3-input:disabled, .bp3-dark textarea.bp3-input.bp3-disabled{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
-label.bp3-label{
- display:block;
- margin-bottom:15px;
- margin-top:0; }
- label.bp3-label .bp3-html-select,
- label.bp3-label .bp3-input,
- label.bp3-label .bp3-select,
- label.bp3-label .bp3-slider,
- label.bp3-label .bp3-popover-wrapper{
- display:block;
- margin-top:5px;
- text-transform:none; }
- label.bp3-label .bp3-button-group{
- margin-top:5px; }
- label.bp3-label .bp3-select select,
- label.bp3-label .bp3-html-select select{
- font-weight:400;
- vertical-align:top;
- width:100%; }
- label.bp3-label.bp3-disabled,
- label.bp3-label.bp3-disabled .bp3-text-muted{
- color:rgba(92, 112, 128, 0.6); }
- label.bp3-label.bp3-inline{
- line-height:30px; }
- label.bp3-label.bp3-inline .bp3-html-select,
- label.bp3-label.bp3-inline .bp3-input,
- label.bp3-label.bp3-inline .bp3-input-group,
- label.bp3-label.bp3-inline .bp3-select,
- label.bp3-label.bp3-inline .bp3-popover-wrapper{
- display:inline-block;
- margin:0 0 0 5px;
- vertical-align:top; }
- label.bp3-label.bp3-inline .bp3-button-group{
- margin:0 0 0 5px; }
- label.bp3-label.bp3-inline .bp3-input-group .bp3-input{
- margin-left:0; }
- label.bp3-label.bp3-inline.bp3-large{
- line-height:40px; }
- label.bp3-label:not(.bp3-inline) .bp3-popover-target{
- display:block; }
- .bp3-dark label.bp3-label{
- color:#f5f8fa; }
- .bp3-dark label.bp3-label.bp3-disabled,
- .bp3-dark label.bp3-label.bp3-disabled .bp3-text-muted{
- color:rgba(167, 182, 194, 0.6); }
-.bp3-numeric-input .bp3-button-group.bp3-vertical > .bp3-button{
- -webkit-box-flex:1;
- -ms-flex:1 1 14px;
- flex:1 1 14px;
- min-height:0;
- padding:0;
- width:30px; }
- .bp3-numeric-input .bp3-button-group.bp3-vertical > .bp3-button:first-child{
- border-radius:0 3px 0 0; }
- .bp3-numeric-input .bp3-button-group.bp3-vertical > .bp3-button:last-child{
- border-radius:0 0 3px 0; }
-
-.bp3-numeric-input .bp3-button-group.bp3-vertical:first-child > .bp3-button:first-child{
- border-radius:3px 0 0 0; }
-
-.bp3-numeric-input .bp3-button-group.bp3-vertical:first-child > .bp3-button:last-child{
- border-radius:0 0 0 3px; }
-
-.bp3-numeric-input.bp3-large .bp3-button-group.bp3-vertical > .bp3-button{
- width:40px; }
-
-form{
- display:block; }
-.bp3-html-select select,
-.bp3-select select{
- display:-webkit-inline-box;
- display:-ms-inline-flexbox;
- display:inline-flex;
- -webkit-box-orient:horizontal;
- -webkit-box-direction:normal;
- -ms-flex-direction:row;
- flex-direction:row;
- -webkit-box-align:center;
- -ms-flex-align:center;
- align-items:center;
- border:none;
- border-radius:3px;
- cursor:pointer;
- font-size:14px;
- -webkit-box-pack:center;
- -ms-flex-pack:center;
- justify-content:center;
- padding:5px 10px;
- text-align:left;
- vertical-align:middle;
- background-color:#f5f8fa;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.8)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.8), rgba(255, 255, 255, 0));
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- color:#182026;
- -moz-appearance:none;
- -webkit-appearance:none;
- border-radius:3px;
- height:30px;
- padding:0 25px 0 10px;
- width:100%; }
- .bp3-html-select select > *, .bp3-select select > *{
- -webkit-box-flex:0;
- -ms-flex-positive:0;
- flex-grow:0;
- -ms-flex-negative:0;
- flex-shrink:0; }
- .bp3-html-select select > .bp3-fill, .bp3-select select > .bp3-fill{
- -webkit-box-flex:1;
- -ms-flex-positive:1;
- flex-grow:1;
- -ms-flex-negative:1;
- flex-shrink:1; }
- .bp3-html-select select::before,
- .bp3-select select::before, .bp3-html-select select > *, .bp3-select select > *{
- margin-right:7px; }
- .bp3-html-select select:empty::before,
- .bp3-select select:empty::before,
- .bp3-html-select select > :last-child,
- .bp3-select select > :last-child{
- margin-right:0; }
- .bp3-html-select select:hover,
- .bp3-select select:hover{
- background-clip:padding-box;
- background-color:#ebf1f5;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
- .bp3-html-select select:active,
- .bp3-select select:active, .bp3-html-select select.bp3-active,
- .bp3-select select.bp3-active{
- background-color:#d8e1e8;
- background-image:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-html-select select:disabled,
- .bp3-select select:disabled, .bp3-html-select select.bp3-disabled,
- .bp3-select select.bp3-disabled{
- background-color:rgba(206, 217, 224, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- outline:none; }
- .bp3-html-select select:disabled.bp3-active,
- .bp3-select select:disabled.bp3-active, .bp3-html-select select:disabled.bp3-active:hover,
- .bp3-select select:disabled.bp3-active:hover, .bp3-html-select select.bp3-disabled.bp3-active,
- .bp3-select select.bp3-disabled.bp3-active, .bp3-html-select select.bp3-disabled.bp3-active:hover,
- .bp3-select select.bp3-disabled.bp3-active:hover{
- background:rgba(206, 217, 224, 0.7); }
-
-.bp3-html-select.bp3-minimal select,
-.bp3-select.bp3-minimal select{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-html-select.bp3-minimal select:hover,
- .bp3-select.bp3-minimal select:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-html-select.bp3-minimal select:active,
- .bp3-select.bp3-minimal select:active, .bp3-html-select.bp3-minimal select.bp3-active,
- .bp3-select.bp3-minimal select.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-html-select.bp3-minimal select:disabled,
- .bp3-select.bp3-minimal select:disabled, .bp3-html-select.bp3-minimal select:disabled:hover,
- .bp3-select.bp3-minimal select:disabled:hover, .bp3-html-select.bp3-minimal select.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-disabled, .bp3-html-select.bp3-minimal select.bp3-disabled:hover,
- .bp3-select.bp3-minimal select.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-html-select.bp3-minimal select:disabled.bp3-active,
- .bp3-select.bp3-minimal select:disabled.bp3-active, .bp3-html-select.bp3-minimal select:disabled:hover.bp3-active,
- .bp3-select.bp3-minimal select:disabled:hover.bp3-active, .bp3-html-select.bp3-minimal select.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-disabled:hover.bp3-active,
- .bp3-select.bp3-minimal select.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-html-select.bp3-minimal select, .bp3-html-select.bp3-minimal .bp3-dark select,
- .bp3-dark .bp3-select.bp3-minimal select, .bp3-select.bp3-minimal .bp3-dark select{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-html-select.bp3-minimal select:hover, .bp3-html-select.bp3-minimal .bp3-dark select:hover,
- .bp3-dark .bp3-select.bp3-minimal select:hover, .bp3-select.bp3-minimal .bp3-dark select:hover, .bp3-dark .bp3-html-select.bp3-minimal select:active, .bp3-html-select.bp3-minimal .bp3-dark select:active,
- .bp3-dark .bp3-select.bp3-minimal select:active, .bp3-select.bp3-minimal .bp3-dark select:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-html-select.bp3-minimal select:hover, .bp3-html-select.bp3-minimal .bp3-dark select:hover,
- .bp3-dark .bp3-select.bp3-minimal select:hover, .bp3-select.bp3-minimal .bp3-dark select:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-html-select.bp3-minimal select:active, .bp3-html-select.bp3-minimal .bp3-dark select:active,
- .bp3-dark .bp3-select.bp3-minimal select:active, .bp3-select.bp3-minimal .bp3-dark select:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-html-select.bp3-minimal select:disabled, .bp3-html-select.bp3-minimal .bp3-dark select:disabled,
- .bp3-dark .bp3-select.bp3-minimal select:disabled, .bp3-select.bp3-minimal .bp3-dark select:disabled, .bp3-dark .bp3-html-select.bp3-minimal select:disabled:hover, .bp3-html-select.bp3-minimal .bp3-dark select:disabled:hover,
- .bp3-dark .bp3-select.bp3-minimal select:disabled:hover, .bp3-select.bp3-minimal .bp3-dark select:disabled:hover, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled:hover, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled:hover,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled:hover, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-html-select.bp3-minimal select:disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select:disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select:disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select:disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select:disabled:hover.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select:disabled:hover.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select:disabled:hover.bp3-active, .bp3-select.bp3-minimal .bp3-dark select:disabled:hover.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled:hover.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled:hover.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled:hover.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary,
- .bp3-select.bp3-minimal select.bp3-intent-primary{
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:hover,
- .bp3-select.bp3-minimal select.bp3-intent-primary:hover, .bp3-html-select.bp3-minimal select.bp3-intent-primary:active,
- .bp3-select.bp3-minimal select.bp3-intent-primary:active, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:hover,
- .bp3-select.bp3-minimal select.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:active,
- .bp3-select.bp3-minimal select.bp3-intent-primary:active, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled,
- .bp3-select.bp3-minimal select.bp3-intent-primary:disabled, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head, .bp3-select.bp3-minimal select.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:hover, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:hover,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:hover, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-success,
- .bp3-select.bp3-minimal select.bp3-intent-success{
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:hover,
- .bp3-select.bp3-minimal select.bp3-intent-success:hover, .bp3-html-select.bp3-minimal select.bp3-intent-success:active,
- .bp3-select.bp3-minimal select.bp3-intent-success:active, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:hover,
- .bp3-select.bp3-minimal select.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:active,
- .bp3-select.bp3-minimal select.bp3-intent-success:active, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled,
- .bp3-select.bp3-minimal select.bp3-intent-success:disabled, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success:disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-success .bp3-button-spinner .bp3-spinner-head, .bp3-select.bp3-minimal select.bp3-intent-success .bp3-button-spinner .bp3-spinner-head{
- stroke:#0d8050; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success{
- color:#3dcc91; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:hover, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:hover,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success:hover, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.2);
- color:#3dcc91; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success:active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#3dcc91; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success:disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success:disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(61, 204, 145, 0.5); }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success:disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success:disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success.bp3-disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning,
- .bp3-select.bp3-minimal select.bp3-intent-warning{
- color:#bf7326; }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning:hover,
- .bp3-select.bp3-minimal select.bp3-intent-warning:hover, .bp3-html-select.bp3-minimal select.bp3-intent-warning:active,
- .bp3-select.bp3-minimal select.bp3-intent-warning:active, .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#bf7326; }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning:hover,
- .bp3-select.bp3-minimal select.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning:active,
- .bp3-select.bp3-minimal select.bp3-intent-warning:active, .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#bf7326; }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning:disabled,
- .bp3-select.bp3-minimal select.bp3-intent-warning:disabled, .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(191, 115, 38, 0.5); }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning:disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-warning:disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head, .bp3-select.bp3-minimal select.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head{
- stroke:#bf7326; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning{
- color:#ffb366; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning:hover, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning:hover,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning:hover, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.2);
- color:#ffb366; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning:active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning:active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning:active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#ffb366; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning:disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning:disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning:disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning:disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(255, 179, 102, 0.5); }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning:disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning:disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning:disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning:disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-warning.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-warning.bp3-disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-danger,
- .bp3-select.bp3-minimal select.bp3-intent-danger{
- color:#c23030; }
- .bp3-html-select.bp3-minimal select.bp3-intent-danger:hover,
- .bp3-select.bp3-minimal select.bp3-intent-danger:hover, .bp3-html-select.bp3-minimal select.bp3-intent-danger:active,
- .bp3-select.bp3-minimal select.bp3-intent-danger:active, .bp3-html-select.bp3-minimal select.bp3-intent-danger.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-danger.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#c23030; }
- .bp3-html-select.bp3-minimal select.bp3-intent-danger:hover,
- .bp3-select.bp3-minimal select.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.15);
- color:#c23030; }
- .bp3-html-select.bp3-minimal select.bp3-intent-danger:active,
- .bp3-select.bp3-minimal select.bp3-intent-danger:active, .bp3-html-select.bp3-minimal select.bp3-intent-danger.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#c23030; }
- .bp3-html-select.bp3-minimal select.bp3-intent-danger:disabled,
- .bp3-select.bp3-minimal select.bp3-intent-danger:disabled, .bp3-html-select.bp3-minimal select.bp3-intent-danger.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(194, 48, 48, 0.5); }
- .bp3-html-select.bp3-minimal select.bp3-intent-danger:disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-danger:disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-intent-danger.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
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- background-color:rgba(219, 55, 55, 0.7); }
- .bp3-tag.bp3-fill{
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- width:100%; }
- .bp3-tag.bp3-minimal > .bp3-icon, .bp3-tag.bp3-minimal .bp3-icon-standard, .bp3-tag.bp3-minimal .bp3-icon-large{
- fill:#5c7080; }
- .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]){
- background-color:rgba(138, 155, 168, 0.2);
- color:#182026; }
- .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive{
- cursor:pointer; }
- .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive:hover{
- background-color:rgba(92, 112, 128, 0.3); }
- .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive.bp3-active, .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive:active{
- background-color:rgba(92, 112, 128, 0.4); }
- .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]){
- color:#f5f8fa; }
- .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive{
- cursor:pointer; }
- .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive:hover{
- background-color:rgba(191, 204, 214, 0.3); }
- .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive.bp3-active, .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]).bp3-interactive:active{
- background-color:rgba(191, 204, 214, 0.4); }
- .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]) > .bp3-icon, .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]) .bp3-icon-standard, .bp3-dark .bp3-tag.bp3-minimal:not([class*="bp3-intent-"]) .bp3-icon-large{
- fill:#a7b6c2; }
- .bp3-tag.bp3-minimal.bp3-intent-primary{
- background-color:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-tag.bp3-minimal.bp3-intent-primary.bp3-interactive{
- cursor:pointer; }
- .bp3-tag.bp3-minimal.bp3-intent-primary.bp3-interactive:hover{
- background-color:rgba(19, 124, 189, 0.25); }
- .bp3-tag.bp3-minimal.bp3-intent-primary.bp3-interactive.bp3-active, .bp3-tag.bp3-minimal.bp3-intent-primary.bp3-interactive:active{
- background-color:rgba(19, 124, 189, 0.35); }
- .bp3-tag.bp3-minimal.bp3-intent-primary > .bp3-icon, .bp3-tag.bp3-minimal.bp3-intent-primary .bp3-icon-standard, .bp3-tag.bp3-minimal.bp3-intent-primary .bp3-icon-large{
- fill:#137cbd; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-primary{
- background-color:rgba(19, 124, 189, 0.25);
- color:#48aff0; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-primary.bp3-interactive{
- cursor:pointer; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-primary.bp3-interactive:hover{
- background-color:rgba(19, 124, 189, 0.35); }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-primary.bp3-interactive.bp3-active, .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-primary.bp3-interactive:active{
- background-color:rgba(19, 124, 189, 0.45); }
- .bp3-tag.bp3-minimal.bp3-intent-success{
- background-color:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-tag.bp3-minimal.bp3-intent-success.bp3-interactive{
- cursor:pointer; }
- .bp3-tag.bp3-minimal.bp3-intent-success.bp3-interactive:hover{
- background-color:rgba(15, 153, 96, 0.25); }
- .bp3-tag.bp3-minimal.bp3-intent-success.bp3-interactive.bp3-active, .bp3-tag.bp3-minimal.bp3-intent-success.bp3-interactive:active{
- background-color:rgba(15, 153, 96, 0.35); }
- .bp3-tag.bp3-minimal.bp3-intent-success > .bp3-icon, .bp3-tag.bp3-minimal.bp3-intent-success .bp3-icon-standard, .bp3-tag.bp3-minimal.bp3-intent-success .bp3-icon-large{
- fill:#0f9960; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-success{
- background-color:rgba(15, 153, 96, 0.25);
- color:#3dcc91; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-success.bp3-interactive{
- cursor:pointer; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-success.bp3-interactive:hover{
- background-color:rgba(15, 153, 96, 0.35); }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-success.bp3-interactive.bp3-active, .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-success.bp3-interactive:active{
- background-color:rgba(15, 153, 96, 0.45); }
- .bp3-tag.bp3-minimal.bp3-intent-warning{
- background-color:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
- .bp3-tag.bp3-minimal.bp3-intent-warning.bp3-interactive{
- cursor:pointer; }
- .bp3-tag.bp3-minimal.bp3-intent-warning.bp3-interactive:hover{
- background-color:rgba(217, 130, 43, 0.25); }
- .bp3-tag.bp3-minimal.bp3-intent-warning.bp3-interactive.bp3-active, .bp3-tag.bp3-minimal.bp3-intent-warning.bp3-interactive:active{
- background-color:rgba(217, 130, 43, 0.35); }
- .bp3-tag.bp3-minimal.bp3-intent-warning > .bp3-icon, .bp3-tag.bp3-minimal.bp3-intent-warning .bp3-icon-standard, .bp3-tag.bp3-minimal.bp3-intent-warning .bp3-icon-large{
- fill:#d9822b; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-warning{
- background-color:rgba(217, 130, 43, 0.25);
- color:#ffb366; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-warning.bp3-interactive{
- cursor:pointer; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-warning.bp3-interactive:hover{
- background-color:rgba(217, 130, 43, 0.35); }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-warning.bp3-interactive.bp3-active, .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-warning.bp3-interactive:active{
- background-color:rgba(217, 130, 43, 0.45); }
- .bp3-tag.bp3-minimal.bp3-intent-danger{
- background-color:rgba(219, 55, 55, 0.15);
- color:#c23030; }
- .bp3-tag.bp3-minimal.bp3-intent-danger.bp3-interactive{
- cursor:pointer; }
- .bp3-tag.bp3-minimal.bp3-intent-danger.bp3-interactive:hover{
- background-color:rgba(219, 55, 55, 0.25); }
- .bp3-tag.bp3-minimal.bp3-intent-danger.bp3-interactive.bp3-active, .bp3-tag.bp3-minimal.bp3-intent-danger.bp3-interactive:active{
- background-color:rgba(219, 55, 55, 0.35); }
- .bp3-tag.bp3-minimal.bp3-intent-danger > .bp3-icon, .bp3-tag.bp3-minimal.bp3-intent-danger .bp3-icon-standard, .bp3-tag.bp3-minimal.bp3-intent-danger .bp3-icon-large{
- fill:#db3737; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-danger{
- background-color:rgba(219, 55, 55, 0.25);
- color:#ff7373; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-danger.bp3-interactive{
- cursor:pointer; }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-danger.bp3-interactive:hover{
- background-color:rgba(219, 55, 55, 0.35); }
- .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-danger.bp3-interactive.bp3-active, .bp3-dark .bp3-tag.bp3-minimal.bp3-intent-danger.bp3-interactive:active{
- background-color:rgba(219, 55, 55, 0.45); }
-
-.bp3-tag-remove{
- background:none;
- border:none;
- color:inherit;
- cursor:pointer;
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- margin-bottom:-2px;
- margin-right:-6px !important;
- margin-top:-2px;
- opacity:0.5;
- padding:2px;
- padding-left:0; }
- .bp3-tag-remove:hover{
- background:none;
- opacity:0.8;
- text-decoration:none; }
- .bp3-tag-remove:active{
- opacity:1; }
- .bp3-tag-remove:empty::before{
- font-family:"Icons16", sans-serif;
- font-size:16px;
- font-style:normal;
- font-weight:400;
- line-height:1;
- -moz-osx-font-smoothing:grayscale;
- -webkit-font-smoothing:antialiased;
- content:""; }
- .bp3-large .bp3-tag-remove{
- margin-right:-10px !important;
- padding:0 5px 0 0; }
- .bp3-large .bp3-tag-remove:empty::before{
- font-family:"Icons20", sans-serif;
- font-size:20px;
- font-style:normal;
- font-weight:400;
- line-height:1; }
-.bp3-tag-input{
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- -webkit-box-orient:horizontal;
- -webkit-box-direction:normal;
- -ms-flex-direction:row;
- flex-direction:row;
- -webkit-box-align:start;
- -ms-flex-align:start;
- align-items:flex-start;
- cursor:text;
- height:auto;
- line-height:inherit;
- min-height:30px;
- padding-left:5px;
- padding-right:0; }
- .bp3-tag-input > *{
- -webkit-box-flex:0;
- -ms-flex-positive:0;
- flex-grow:0;
- -ms-flex-negative:0;
- flex-shrink:0; }
- .bp3-tag-input > .bp3-tag-input-values{
- -webkit-box-flex:1;
- -ms-flex-positive:1;
- flex-grow:1;
- -ms-flex-negative:1;
- flex-shrink:1; }
- .bp3-tag-input .bp3-tag-input-icon{
- color:#5c7080;
- margin-left:2px;
- margin-right:7px;
- margin-top:7px; }
- .bp3-tag-input .bp3-tag-input-values{
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- -webkit-box-orient:horizontal;
- -webkit-box-direction:normal;
- -ms-flex-direction:row;
- flex-direction:row;
- -webkit-box-align:center;
- -ms-flex-align:center;
- align-items:center;
- -ms-flex-item-align:stretch;
- align-self:stretch;
- -ms-flex-wrap:wrap;
- flex-wrap:wrap;
- margin-right:7px;
- margin-top:5px;
- min-width:0; }
- .bp3-tag-input .bp3-tag-input-values > *{
- -webkit-box-flex:0;
- -ms-flex-positive:0;
- flex-grow:0;
- -ms-flex-negative:0;
- flex-shrink:0; }
- .bp3-tag-input .bp3-tag-input-values > .bp3-fill{
- -webkit-box-flex:1;
- -ms-flex-positive:1;
- flex-grow:1;
- -ms-flex-negative:1;
- flex-shrink:1; }
- .bp3-tag-input .bp3-tag-input-values::before,
- .bp3-tag-input .bp3-tag-input-values > *{
- margin-right:5px; }
- .bp3-tag-input .bp3-tag-input-values:empty::before,
- .bp3-tag-input .bp3-tag-input-values > :last-child{
- margin-right:0; }
- .bp3-tag-input .bp3-tag-input-values:first-child .bp3-input-ghost:first-child{
- padding-left:5px; }
- .bp3-tag-input .bp3-tag-input-values > *{
- margin-bottom:5px; }
- .bp3-tag-input .bp3-tag{
- overflow-wrap:break-word; }
- .bp3-tag-input .bp3-tag.bp3-active{
- outline:rgba(19, 124, 189, 0.6) auto 2px;
- outline-offset:0;
- -moz-outline-radius:6px; }
- .bp3-tag-input .bp3-input-ghost{
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto;
- line-height:20px;
- width:80px; }
- .bp3-tag-input .bp3-input-ghost:disabled, .bp3-tag-input .bp3-input-ghost.bp3-disabled{
- cursor:not-allowed; }
- .bp3-tag-input .bp3-button,
- .bp3-tag-input .bp3-spinner{
- margin:3px;
- margin-left:0; }
- .bp3-tag-input .bp3-button{
- min-height:24px;
- min-width:24px;
- padding:0 7px; }
- .bp3-tag-input.bp3-large{
- height:auto;
- min-height:40px; }
- .bp3-tag-input.bp3-large::before,
- .bp3-tag-input.bp3-large > *{
- margin-right:10px; }
- .bp3-tag-input.bp3-large:empty::before,
- .bp3-tag-input.bp3-large > :last-child{
- margin-right:0; }
- .bp3-tag-input.bp3-large .bp3-tag-input-icon{
- margin-left:5px;
- margin-top:10px; }
- .bp3-tag-input.bp3-large .bp3-input-ghost{
- line-height:30px; }
- .bp3-tag-input.bp3-large .bp3-button{
- min-height:30px;
- min-width:30px;
- padding:5px 10px;
- margin:5px;
- margin-left:0; }
- .bp3-tag-input.bp3-large .bp3-spinner{
- margin:8px;
- margin-left:0; }
- .bp3-tag-input.bp3-active{
- background-color:#ffffff;
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-tag-input.bp3-active.bp3-intent-primary{
- -webkit-box-shadow:0 0 0 1px #106ba3, 0 0 0 3px rgba(16, 107, 163, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #106ba3, 0 0 0 3px rgba(16, 107, 163, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
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- -webkit-box-shadow:0 0 0 1px #0d8050, 0 0 0 3px rgba(13, 128, 80, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #0d8050, 0 0 0 3px rgba(13, 128, 80, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
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- -webkit-box-shadow:0 0 0 1px #bf7326, 0 0 0 3px rgba(191, 115, 38, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #bf7326, 0 0 0 3px rgba(191, 115, 38, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
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- -webkit-box-shadow:0 0 0 1px #c23030, 0 0 0 3px rgba(194, 48, 48, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #c23030, 0 0 0 3px rgba(194, 48, 48, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-tag-input .bp3-tag-input-icon, .bp3-tag-input.bp3-dark .bp3-tag-input-icon{
- color:#a7b6c2; }
- .bp3-dark .bp3-tag-input .bp3-input-ghost, .bp3-tag-input.bp3-dark .bp3-input-ghost{
- color:#f5f8fa; }
- .bp3-dark .bp3-tag-input .bp3-input-ghost::-webkit-input-placeholder, .bp3-tag-input.bp3-dark .bp3-input-ghost::-webkit-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-tag-input .bp3-input-ghost::-moz-placeholder, .bp3-tag-input.bp3-dark .bp3-input-ghost::-moz-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-tag-input .bp3-input-ghost:-ms-input-placeholder, .bp3-tag-input.bp3-dark .bp3-input-ghost:-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-tag-input .bp3-input-ghost::-ms-input-placeholder, .bp3-tag-input.bp3-dark .bp3-input-ghost::-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-tag-input .bp3-input-ghost::placeholder, .bp3-tag-input.bp3-dark .bp3-input-ghost::placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-tag-input.bp3-active, .bp3-tag-input.bp3-dark.bp3-active{
- background-color:rgba(16, 22, 26, 0.3);
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-tag-input.bp3-active.bp3-intent-primary, .bp3-tag-input.bp3-dark.bp3-active.bp3-intent-primary{
- -webkit-box-shadow:0 0 0 1px #106ba3, 0 0 0 3px rgba(16, 107, 163, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #106ba3, 0 0 0 3px rgba(16, 107, 163, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-tag-input.bp3-active.bp3-intent-success, .bp3-tag-input.bp3-dark.bp3-active.bp3-intent-success{
- -webkit-box-shadow:0 0 0 1px #0d8050, 0 0 0 3px rgba(13, 128, 80, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #0d8050, 0 0 0 3px rgba(13, 128, 80, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-tag-input.bp3-active.bp3-intent-warning, .bp3-tag-input.bp3-dark.bp3-active.bp3-intent-warning{
- -webkit-box-shadow:0 0 0 1px #bf7326, 0 0 0 3px rgba(191, 115, 38, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #bf7326, 0 0 0 3px rgba(191, 115, 38, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-tag-input.bp3-active.bp3-intent-danger, .bp3-tag-input.bp3-dark.bp3-active.bp3-intent-danger{
- -webkit-box-shadow:0 0 0 1px #c23030, 0 0 0 3px rgba(194, 48, 48, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #c23030, 0 0 0 3px rgba(194, 48, 48, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
-
-.bp3-input-ghost{
- background:none;
- border:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- padding:0; }
- .bp3-input-ghost::-webkit-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input-ghost::-moz-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
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- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
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- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input-ghost::placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input-ghost:focus{
- outline:none !important; }
-.bp3-toast{
- -webkit-box-align:start;
- -ms-flex-align:start;
- align-items:flex-start;
- background-color:#ffffff;
- border-radius:3px;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 2px 4px rgba(16, 22, 26, 0.2), 0 8px 24px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 2px 4px rgba(16, 22, 26, 0.2), 0 8px 24px rgba(16, 22, 26, 0.2);
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- margin:20px 0 0;
- max-width:500px;
- min-width:300px;
- pointer-events:all;
- position:relative !important; }
- .bp3-toast.bp3-toast-enter, .bp3-toast.bp3-toast-appear{
- -webkit-transform:translateY(-40px);
- transform:translateY(-40px); }
- .bp3-toast.bp3-toast-enter-active, .bp3-toast.bp3-toast-appear-active{
- -webkit-transform:translateY(0);
- transform:translateY(0);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:300ms;
- transition-duration:300ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.54, 1.12, 0.38, 1.11);
- transition-timing-function:cubic-bezier(0.54, 1.12, 0.38, 1.11); }
- .bp3-toast.bp3-toast-enter ~ .bp3-toast, .bp3-toast.bp3-toast-appear ~ .bp3-toast{
- -webkit-transform:translateY(-40px);
- transform:translateY(-40px); }
- .bp3-toast.bp3-toast-enter-active ~ .bp3-toast, .bp3-toast.bp3-toast-appear-active ~ .bp3-toast{
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- transform:translateY(0);
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- transition-delay:0;
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-
-.bp3-dark .bp3-tree .bp3-icon, .bp3-dark .bp3-tree .bp3-icon-standard, .bp3-dark .bp3-tree .bp3-icon-large{
- color:#a7b6c2; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-primary, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-primary, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-primary{
- color:#137cbd; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-success, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-success, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-success{
- color:#0f9960; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-warning, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-warning, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-warning{
- color:#d9822b; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-danger, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-danger, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-danger{
- color:#db3737; }
-
-.bp3-dark .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content{
- background-color:#137cbd; }
-.bp3-omnibar{
- -webkit-filter:blur(0);
- filter:blur(0);
- opacity:1;
- background-color:#ffffff;
- border-radius:3px;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 4px 8px rgba(16, 22, 26, 0.2), 0 18px 46px 6px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 4px 8px rgba(16, 22, 26, 0.2), 0 18px 46px 6px rgba(16, 22, 26, 0.2);
- left:calc(50% - 250px);
- top:20vh;
- width:500px;
- z-index:21; }
- .bp3-omnibar.bp3-overlay-enter, .bp3-omnibar.bp3-overlay-appear{
- -webkit-filter:blur(20px);
- filter:blur(20px);
- opacity:0.2; }
- .bp3-omnibar.bp3-overlay-enter-active, .bp3-omnibar.bp3-overlay-appear-active{
- -webkit-filter:blur(0);
- filter:blur(0);
- opacity:1;
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:200ms;
- transition-duration:200ms;
- -webkit-transition-property:opacity, -webkit-filter;
- transition-property:opacity, -webkit-filter;
- transition-property:filter, opacity;
- transition-property:filter, opacity, -webkit-filter;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-omnibar.bp3-overlay-exit{
- -webkit-filter:blur(0);
- filter:blur(0);
- opacity:1; }
- .bp3-omnibar.bp3-overlay-exit-active{
- -webkit-filter:blur(20px);
- filter:blur(20px);
- opacity:0.2;
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:200ms;
- transition-duration:200ms;
- -webkit-transition-property:opacity, -webkit-filter;
- transition-property:opacity, -webkit-filter;
- transition-property:filter, opacity;
- transition-property:filter, opacity, -webkit-filter;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-omnibar .bp3-input{
- background-color:transparent;
- border-radius:0; }
- .bp3-omnibar .bp3-input, .bp3-omnibar .bp3-input:focus{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-omnibar .bp3-menu{
- background-color:transparent;
- border-radius:0;
- -webkit-box-shadow:inset 0 1px 0 rgba(16, 22, 26, 0.15);
- box-shadow:inset 0 1px 0 rgba(16, 22, 26, 0.15);
- max-height:calc(60vh - 40px);
- overflow:auto; }
- .bp3-omnibar .bp3-menu:empty{
- display:none; }
- .bp3-dark .bp3-omnibar, .bp3-omnibar.bp3-dark{
- background-color:#30404d;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 4px 8px rgba(16, 22, 26, 0.4), 0 18px 46px 6px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 4px 8px rgba(16, 22, 26, 0.4), 0 18px 46px 6px rgba(16, 22, 26, 0.4); }
-
-.bp3-omnibar-overlay .bp3-overlay-backdrop{
- background-color:rgba(16, 22, 26, 0.2); }
-
-.bp3-select-popover .bp3-popover-content{
- padding:5px; }
-
-.bp3-select-popover .bp3-input-group{
- margin-bottom:0; }
-
-.bp3-select-popover .bp3-menu{
- max-height:300px;
- max-width:400px;
- overflow:auto;
- padding:0; }
- .bp3-select-popover .bp3-menu:not(:first-child){
- padding-top:5px; }
-
-.bp3-multi-select{
- min-width:150px; }
-
-.bp3-multi-select-popover .bp3-menu{
- max-height:300px;
- max-width:400px;
- overflow:auto; }
-
-.bp3-select-popover .bp3-popover-content{
- padding:5px; }
-
-.bp3-select-popover .bp3-input-group{
- margin-bottom:0; }
-
-.bp3-select-popover .bp3-menu{
- max-height:300px;
- max-width:400px;
- overflow:auto;
- padding:0; }
- .bp3-select-popover .bp3-menu:not(:first-child){
- padding-top:5px; }
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/* This file was auto-generated by ensureUiComponents() in @jupyterlab/buildutils */
-
-/**
- * (DEPRECATED) Support for consuming icons as CSS background images
- */
-
-/* Icons urls */
-
-:root {
- --jp-icon-add: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTE5IDEzaC02djZoLTJ2LTZINXYtMmg2VjVoMnY2aDZ2MnoiLz4KICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-bug: url(data:image/svg+xml;base64,PHN2ZyB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIxNiIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICA8ZyBjbGFzcz0ianAtaWNvbjMganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNjE2MTYxIj4KICAgIDxwYXRoIGQ9Ik0yMCA4aC0yLjgxYy0uNDUtLjc4LTEuMDctMS40NS0xLjgyLTEuOTZMMTcgNC40MSAxNS41OSAzbC0yLjE3IDIuMTdDMTIuOTYgNS4wNiAxMi40OSA1IDEyIDVjLS40OSAwLS45Ni4wNi0xLjQxLjE3TDguNDEgMyA3IDQuNDFsMS42MiAxLjYzQzcuODggNi41NSA3LjI2IDcuMjIgNi44MSA4SDR2MmgyLjA5Yy0uMDUuMzMtLjA5LjY2LS4wOSAxdjFINHYyaDJ2MWMwIC4zNC4wNC42Ny4wOSAxSDR2MmgyLjgxYzEuMDQgMS43OSAyLjk3IDMgNS4xOSAzczQuMTUtMS4yMSA1LjE5LTNIMjB2LTJoLTIuMDljLjA1LS4zMy4wOS0uNjYuMDktMXYtMWgydi0yaC0ydi0xYzAtLjM0LS4wNC0uNjctLjA5LTFIMjBWOHptLTYgOGgtNHYtMmg0djJ6bTAtNGgtNHYtMmg0djJ6Ii8+CiAgPC9nPgo8L3N2Zz4K);
- --jp-icon-build: url(data:image/svg+xml;base64,PHN2ZyB3aWR0aD0iMTYiIHZpZXdCb3g9IjAgMCAyNCAyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTE0LjkgMTcuNDVDMTYuMjUgMTcuNDUgMTcuMzUgMTYuMzUgMTcuMzUgMTVDMTcuMzUgMTMuNjUgMTYuMjUgMTIuNTUgMTQuOSAxMi41NUMxMy41NCAxMi41NSAxMi40NSAxMy42NSAxMi40NSAxNUMxMi40NSAxNi4zNSAxMy41NCAxNy40NSAxNC45IDE3LjQ1Wk0yMC4xIDE1LjY4TDIxLjU4IDE2Ljg0QzIxLjcxIDE2Ljk1IDIxLjc1IDE3LjEzIDIxLjY2IDE3LjI5TDIwLjI2IDE5LjcxQzIwLjE3IDE5Ljg2IDIwIDE5LjkyIDE5LjgzIDE5Ljg2TDE4LjA5IDE5LjE2QzE3LjczIDE5LjQ0IDE3LjMzIDE5LjY3IDE2LjkxIDE5Ljg1TDE2LjY0IDIxLjdDMTYuNjIgMjEuODcgMTYuNDcgMjIgMTYuMyAyMkgxMy41QzEzLjMyIDIyIDEzLjE4IDIxLjg3IDEzLjE1IDIxLjdMMTIuODkgMTkuODVDMTIuNDYgMTkuNjcgMTIuMDcgMTkuNDQgMTEuNzEgMTkuMTZMOS45NjAwMiAxOS44NkM5LjgxMDAyIDE5LjkyIDkuNjIwMDIgMTkuODYgOS41NDAwMiAxOS43MUw4LjE0MDAyIDE3LjI5QzguMDUwMDIgMTcuMTMgOC4wOTAwMiAxNi45NSA4LjIyMDAyIDE2Ljg0TDkuNzAwMDIgMTUuNjhMOS42NTAwMSAxNUw5LjcwMDAyIDE0LjMxTDguMjIwMDIgMTMuMTZDOC4wOTAwMiAxMy4wNSA4LjA1MDAyIDEyLjg2IDguMTQwMDIgMTIuNzFMOS41NDAwMiAxMC4yOUM5LjYyMDAyIDEwLjEzIDkuODEwMDIgMTAuMDcgOS45NjAwMiAxMC4xM0wxMS43MSAxMC44NEMxMi4wNyAxMC41NiAxMi40NiAxMC4zMiAxMi44OSAxMC4xNUwxMy4xNSA4LjI4OTk4QzEzLjE4IDguMTI5OTggMTMuMzIgNy45OTk5OCAxMy41IDcuOTk5OThIMTYuM0MxNi40NyA3Ljk5OTk4IDE2LjYyIDguMTI5OTggMTYuNjQgOC4yODk5OEwxNi45MSAxMC4xNUMxNy4zMyAxMC4zMiAxNy43MyAxMC41NiAxOC4wOSAxMC44NEwxOS44MyAxMC4xM0MyMCAxMC4wNyAyMC4xNyAxMC4xMyAyMC4yNiAxMC4yOUwyMS42NiAxMi43MUMyMS43NSAxMi44NiAyMS43MSAxMy4wNSAyMS41OCAxMy4xNkwyMC4xIDE0LjMxTDIwLjE1IDE1TDIwLjEgMTUuNjhaIi8+CiAgICA8cGF0aCBkPSJNNy4zMjk2NiA3LjQ0NDU0QzguMDgzMSA3LjAwOTU0IDguMzM5MzIgNi4wNTMzMiA3LjkwNDMyIDUuMjk5ODhDNy40NjkzMiA0LjU0NjQzIDYuNTA4MSA0LjI4MTU2IDUuNzU0NjYgNC43MTY1NkM1LjM5MTc2IDQuOTI2MDggNS4xMjY5NSA1LjI3MTE4IDUuMDE4NDkgNS42NzU5NEM0LjkxMDA0IDYuMDgwNzEgNC45NjY4MiA2LjUxMTk4IDUuMTc2MzQgNi44NzQ4OEM1LjYxMTM0IDcuNjI4MzIgNi41NzYyMiA3Ljg3OTU0IDcuMzI5NjYgNy40NDQ1NFpNOS42NTcxOCA0Ljc5NTkzTDEwLjg2NzIgNC45NTE3OUMxMC45NjI4IDQuOTc3NDEgMTEuMDQwMiA1LjA3MTMzIDExLjAzODIgNS4xODc5M0wxMS4wMzg4IDYuOTg4OTNDMTEuMDQ1NSA3LjEwMDU0IDEwLjk2MTYgNy4xOTUxOCAxMC44NTUgNy4yMTA1NEw5LjY2MDAxIDcuMzgwODNMOS4yMzkxNSA4LjEzMTg4TDkuNjY5NjEgOS4yNTc0NUM5LjcwNzI5IDkuMzYyNzEgOS42NjkzNCA5LjQ3Njk5IDkuNTc0MDggOS41MzE5OUw4LjAxNTIzIDEwLjQzMkM3LjkxMTMxIDEwLjQ5MiA3Ljc5MzM3IDEwLjQ2NzcgNy43MjEwNSAxMC4zODI0TDYuOTg3NDggOS40MzE4OEw2LjEwOTMxIDkuNDMwODNMNS4zNDcwNCAxMC4zOTA1QzUuMjg5MDkgMTAuNDcwMiA1LjE3MzgzIDEwLjQ5MDUgNS4wNzE4NyAxMC40MzM5TDMuNTEyNDUgOS41MzI5M0MzLjQxMDQ5IDkuNDc2MzMgMy4zNzY0NyA5LjM1NzQxIDMuNDEwNzUgOS4yNTY3OUwzLjg2MzQ3IDguMTQwOTNMMy42MTc0OSA3Ljc3NDg4TDMuNDIzNDcgNy4zNzg4M0wyLjIzMDc1IDcuMjEyOTdDMi4xMjY0NyA3LjE5MjM1IDIuMDQwNDkgNy4xMDM0MiAyLjA0MjQ1IDYuOTg2ODJMMi4wNDE4NyA1LjE4NTgyQzIuMDQzODMgNS4wNjkyMiAyLjExOTA5IDQuOTc5NTggMi4yMTcwNCA0Ljk2OTIyTDMuNDIwNjUgNC43OTM5M0wzLjg2NzQ5IDQuMDI3ODhMMy40MTEwNSAyLjkxNzMxQzMuMzczMzcgMi44MTIwNCAzLjQxMTMxIDIuNjk3NzYgMy41MTUyMyAyLjYzNzc2TDUuMDc0MDggMS43Mzc3NkM1LjE2OTM0IDEuNjgyNzYgNS4yODcyOSAxLjcwNzA0IDUuMzU5NjEgMS43OTIzMUw2LjExOTE1IDIuNzI3ODhMNi45ODAwMSAyLjczODkzTDcuNzI0OTYgMS43ODkyMkM3Ljc5MTU2IDEuNzA0NTggNy45MTU0OCAxLjY3OTIyIDguMDA4NzkgMS43NDA4Mkw5LjU2ODIxIDIuNjQxODJDOS42NzAxNyAyLjY5ODQyIDkuNzEyODUgMi44MTIzNCA5LjY4NzIzIDIuOTA3OTdMOS4yMTcxOCA0LjAzMzgzTDkuNDYzMTYgNC4zOTk4OEw5LjY1NzE4IDQuNzk1OTNaIi8+CiAgPC9nPgo8L3N2Zz4K);
- --jp-icon-caret-down-empty-thin: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDIwIDIwIj4KCTxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSIgc2hhcGUtcmVuZGVyaW5nPSJnZW9tZXRyaWNQcmVjaXNpb24iPgoJCTxwb2x5Z29uIGNsYXNzPSJzdDEiIHBvaW50cz0iOS45LDEzLjYgMy42LDcuNCA0LjQsNi42IDkuOSwxMi4yIDE1LjQsNi43IDE2LjEsNy40ICIvPgoJPC9nPgo8L3N2Zz4K);
- --jp-icon-caret-down-empty: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiIHNoYXBlLXJlbmRlcmluZz0iZ2VvbWV0cmljUHJlY2lzaW9uIj4KICAgIDxwYXRoIGQ9Ik01LjIsNS45TDksOS43bDMuOC0zLjhsMS4yLDEuMmwtNC45LDVsLTQuOS01TDUuMiw1Ljl6Ii8+CiAgPC9nPgo8L3N2Zz4K);
- --jp-icon-caret-down: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiIHNoYXBlLXJlbmRlcmluZz0iZ2VvbWV0cmljUHJlY2lzaW9uIj4KICAgIDxwYXRoIGQ9Ik01LjIsNy41TDksMTEuMmwzLjgtMy44SDUuMnoiLz4KICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-caret-left: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KCTxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSIgc2hhcGUtcmVuZGVyaW5nPSJnZW9tZXRyaWNQcmVjaXNpb24iPgoJCTxwYXRoIGQ9Ik0xMC44LDEyLjhMNy4xLDlsMy44LTMuOGwwLDcuNkgxMC44eiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-caret-right: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiIHNoYXBlLXJlbmRlcmluZz0iZ2VvbWV0cmljUHJlY2lzaW9uIj4KICAgIDxwYXRoIGQ9Ik03LjIsNS4yTDEwLjksOWwtMy44LDMuOFY1LjJINy4yeiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-caret-up-empty-thin: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDIwIDIwIj4KCTxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSIgc2hhcGUtcmVuZGVyaW5nPSJnZW9tZXRyaWNQcmVjaXNpb24iPgoJCTxwb2x5Z29uIGNsYXNzPSJzdDEiIHBvaW50cz0iMTUuNCwxMy4zIDkuOSw3LjcgNC40LDEzLjIgMy42LDEyLjUgOS45LDYuMyAxNi4xLDEyLjYgIi8+Cgk8L2c+Cjwvc3ZnPgo=);
- --jp-icon-caret-up: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KCTxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSIgc2hhcGUtcmVuZGVyaW5nPSJnZW9tZXRyaWNQcmVjaXNpb24iPgoJCTxwYXRoIGQ9Ik01LjIsMTAuNUw5LDYuOGwzLjgsMy44SDUuMnoiLz4KICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-case-sensitive: url(data:image/svg+xml;base64,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);
- --jp-icon-check: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNjE2MTYxIj4KICAgIDxwYXRoIGQ9Ik05IDE2LjE3TDQuODMgMTJsLTEuNDIgMS40MUw5IDE5IDIxIDdsLTEuNDEtMS40MXoiLz4KICA8L2c+Cjwvc3ZnPgo=);
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- --jp-icon-jupyterlab-wordmark: 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- --jp-icon-keyboard: url(data:image/svg+xml;base64,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);
- --jp-icon-launcher: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8cGF0aCBjbGFzcz0ianAtaWNvbjMganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNjE2MTYxIiBkPSJNMTkgMTlINVY1aDdWM0g1YTIgMiAwIDAwLTIgMnYxNGEyIDIgMCAwMDIgMmgxNGMxLjEgMCAyLS45IDItMnYtN2gtMnY3ek0xNCAzdjJoMy41OWwtOS44MyA5LjgzIDEuNDEgMS40MUwxOSA2LjQxVjEwaDJWM2gtN3oiLz4KPC9zdmc+Cg==);
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- --jp-icon-link: url(data:image/svg+xml;base64,PHN2ZyB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIxNiIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTMuOSAxMmMwLTEuNzEgMS4zOS0zLjEgMy4xLTMuMWg0VjdIN2MtMi43NiAwLTUgMi4yNC01IDVzMi4yNCA1IDUgNWg0di0xLjlIN2MtMS43MSAwLTMuMS0xLjM5LTMuMS0zLjF6TTggMTNoOHYtMkg4djJ6bTktNmgtNHYxLjloNGMxLjcxIDAgMy4xIDEuMzkgMy4xIDMuMXMtMS4zOSAzLjEtMy4xIDMuMWgtNFYxN2g0YzIuNzYgMCA1LTIuMjQgNS01cy0yLjI0LTUtNS01eiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-list: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICAgIDxwYXRoIGNsYXNzPSJqcC1pY29uMiBqcC1pY29uLXNlbGVjdGFibGUiIGZpbGw9IiM2MTYxNjEiIGQ9Ik0xOSA1djE0SDVWNWgxNG0xLjEtMkgzLjljLS41IDAtLjkuNC0uOS45djE2LjJjMCAuNC40LjkuOS45aDE2LjJjLjQgMCAuOS0uNS45LS45VjMuOWMwLS41LS41LS45LS45LS45ek0xMSA3aDZ2MmgtNlY3em0wIDRoNnYyaC02di0yem0wIDRoNnYyaC02ek03IDdoMnYySDd6bTAgNGgydjJIN3ptMCA0aDJ2Mkg3eiIvPgo8L3N2Zz4=);
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- --jp-icon-pdf: url(data:image/svg+xml;base64,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);
- --jp-icon-python: url(data:image/svg+xml;base64,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);
- --jp-icon-r-kernel: url(data:image/svg+xml;base64,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);
- --jp-icon-react: url(data:image/svg+xml;base64,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);
- --jp-icon-redo: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIGhlaWdodD0iMjQiIHZpZXdCb3g9IjAgMCAyNCAyNCIgd2lkdGg9IjE2Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgICA8cGF0aCBkPSJNMCAwaDI0djI0SDB6IiBmaWxsPSJub25lIi8+PHBhdGggZD0iTTE4LjQgMTAuNkMxNi41NSA4Ljk5IDE0LjE1IDggMTEuNSA4Yy00LjY1IDAtOC41OCAzLjAzLTkuOTYgNy4yMkwzLjkgMTZjMS4wNS0zLjE5IDQuMDUtNS41IDcuNi01LjUgMS45NSAwIDMuNzMuNzIgNS4xMiAxLjg4TDEzIDE2aDlWN2wtMy42IDMuNnoiLz4KICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-refresh: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTkgMTMuNWMtMi40OSAwLTQuNS0yLjAxLTQuNS00LjVTNi41MSA0LjUgOSA0LjVjMS4yNCAwIDIuMzYuNTIgMy4xNyAxLjMzTDEwIDhoNVYzbC0xLjc2IDEuNzZDMTIuMTUgMy42OCAxMC42NiAzIDkgMyA1LjY5IDMgMy4wMSA1LjY5IDMuMDEgOVM1LjY5IDE1IDkgMTVjMi45NyAwIDUuNDMtMi4xNiA1LjktNWgtMS41MmMtLjQ2IDItMi4yNCAzLjUtNC4zOCAzLjV6Ii8+CiAgICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-regex: url(data:image/svg+xml;base64,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);
- --jp-icon-run: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTggNXYxNGwxMS03eiIvPgogICAgPC9nPgo8L3N2Zz4K);
- --jp-icon-running: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDUxMiA1MTIiPgogIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICA8cGF0aCBkPSJNMjU2IDhDMTE5IDggOCAxMTkgOCAyNTZzMTExIDI0OCAyNDggMjQ4IDI0OC0xMTEgMjQ4LTI0OFMzOTMgOCAyNTYgOHptOTYgMzI4YzAgOC44LTcuMiAxNi0xNiAxNkgxNzZjLTguOCAwLTE2LTcuMi0xNi0xNlYxNzZjMC04LjggNy4yLTE2IDE2LTE2aDE2MGM4LjggMCAxNiA3LjIgMTYgMTZ2MTYweiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-save: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTE3IDNINWMtMS4xMSAwLTIgLjktMiAydjE0YzAgMS4xLjg5IDIgMiAyaDE0YzEuMSAwIDItLjkgMi0yVjdsLTQtNHptLTUgMTZjLTEuNjYgMC0zLTEuMzQtMy0zczEuMzQtMyAzLTMgMyAxLjM0IDMgMy0xLjM0IDMtMyAzem0zLTEwSDVWNWgxMHY0eiIvPgogICAgPC9nPgo8L3N2Zz4K);
- --jp-icon-search: url(data:image/svg+xml;base64,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);
- --jp-icon-settings: url(data:image/svg+xml;base64,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);
- --jp-icon-spreadsheet: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDIyIDIyIj4KICA8cGF0aCBjbGFzcz0ianAtaWNvbi1jb250cmFzdDEganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNENBRjUwIiBkPSJNMi4yIDIuMnYxNy42aDE3LjZWMi4ySDIuMnptMTUuNCA3LjdoLTUuNVY0LjRoNS41djUuNXpNOS45IDQuNHY1LjVINC40VjQuNGg1LjV6bS01LjUgNy43aDUuNXY1LjVINC40di01LjV6bTcuNyA1LjV2LTUuNWg1LjV2NS41aC01LjV6Ii8+Cjwvc3ZnPgo=);
- --jp-icon-stop: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTAgMGgyNHYyNEgweiIgZmlsbD0ibm9uZSIvPgogICAgICAgIDxwYXRoIGQ9Ik02IDZoMTJ2MTJINnoiLz4KICAgIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-tab: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTIxIDNIM2MtMS4xIDAtMiAuOS0yIDJ2MTRjMCAxLjEuOSAyIDIgMmgxOGMxLjEgMCAyLS45IDItMlY1YzAtMS4xLS45LTItMi0yem0wIDE2SDNWNWgxMHY0aDh2MTB6Ii8+CiAgPC9nPgo8L3N2Zz4K);
- --jp-icon-table-rows: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTAgMGgyNHYyNEgweiIgZmlsbD0ibm9uZSIvPgogICAgICAgIDxwYXRoIGQ9Ik0yMSw4SDNWNGgxOFY4eiBNMjEsMTBIM3Y0aDE4VjEweiBNMjEsMTZIM3Y0aDE4VjE2eiIvPgogICAgPC9nPgo8L3N2Zz4=);
- --jp-icon-tag: url(data:image/svg+xml;base64,PHN2ZyB3aWR0aD0iMjgiIGhlaWdodD0iMjgiIHZpZXdCb3g9IjAgMCA0MyAyOCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KCTxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CgkJPHBhdGggZD0iTTI4LjgzMzIgMTIuMzM0TDMyLjk5OTggMTYuNTAwN0wzNy4xNjY1IDEyLjMzNEgyOC44MzMyWiIvPgoJCTxwYXRoIGQ9Ik0xNi4yMDk1IDIxLjYxMDRDMTUuNjg3MyAyMi4xMjk5IDE0Ljg0NDMgMjIuMTI5OSAxNC4zMjQ4IDIxLjYxMDRMNi45ODI5IDE0LjcyNDVDNi41NzI0IDE0LjMzOTQgNi4wODMxMyAxMy42MDk4IDYuMDQ3ODYgMTMuMDQ4MkM1Ljk1MzQ3IDExLjUyODggNi4wMjAwMiA4LjYxOTQ0IDYuMDY2MjEgNy4wNzY5NUM2LjA4MjgxIDYuNTE0NzcgNi41NTU0OCA2LjA0MzQ3IDcuMTE4MDQgNi4wMzA1NUM5LjA4ODYzIDUuOTg0NzMgMTMuMjYzOCA1LjkzNTc5IDEzLjY1MTggNi4zMjQyNUwyMS43MzY5IDEzLjYzOUMyMi4yNTYgMTQuMTU4NSAyMS43ODUxIDE1LjQ3MjQgMjEuMjYyIDE1Ljk5NDZMMTYuMjA5NSAyMS42MTA0Wk05Ljc3NTg1IDguMjY1QzkuMzM1NTEgNy44MjU2NiA4LjYyMzUxIDcuODI1NjYgOC4xODI4IDguMjY1QzcuNzQzNDYgOC43MDU3MSA3Ljc0MzQ2IDkuNDE3MzMgOC4xODI4IDkuODU2NjdDOC42MjM4MiAxMC4yOTY0IDkuMzM1ODIgMTAuMjk2NCA5Ljc3NTg1IDkuODU2NjdDMTAuMjE1NiA5LjQxNzMzIDEwLjIxNTYgOC43MDUzMyA5Ljc3NTg1IDguMjY1WiIvPgoJPC9nPgo8L3N2Zz4K);
- --jp-icon-terminal: url(data:image/svg+xml;base64,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);
- --jp-icon-text-editor: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8cGF0aCBjbGFzcz0ianAtaWNvbjMganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNjE2MTYxIiBkPSJNMTUgMTVIM3YyaDEydi0yem0wLThIM3YyaDEyVjd6TTMgMTNoMTh2LTJIM3Yyem0wIDhoMTh2LTJIM3Yyek0zIDN2MmgxOFYzSDN6Ii8+Cjwvc3ZnPgo=);
- --jp-icon-toc: url(data:image/svg+xml;base64,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);
- --jp-icon-tree-view: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTAgMGgyNHYyNEgweiIgZmlsbD0ibm9uZSIvPgogICAgICAgIDxwYXRoIGQ9Ik0yMiAxMVYzaC03djNIOVYzSDJ2OGg3VjhoMnYxMGg0djNoN3YtOGgtN3YzaC0yVjhoMnYzeiIvPgogICAgPC9nPgo8L3N2Zz4=);
- --jp-icon-trusted: url(data:image/svg+xml;base64,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);
- --jp-icon-undo: url(data:image/svg+xml;base64,PHN2ZyB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIxNiIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTEyLjUgOGMtMi42NSAwLTUuMDUuOTktNi45IDIuNkwyIDd2OWg5bC0zLjYyLTMuNjJjMS4zOS0xLjE2IDMuMTYtMS44OCA1LjEyLTEuODggMy41NCAwIDYuNTUgMi4zMSA3LjYgNS41bDIuMzctLjc4QzIxLjA4IDExLjAzIDE3LjE1IDggMTIuNSA4eiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-vega: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDIyIDIyIj4KICA8ZyBjbGFzcz0ianAtaWNvbjEganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjMjEyMTIxIj4KICAgIDxwYXRoIGQ9Ik0xMC42IDUuNGwyLjItMy4ySDIuMnY3LjNsNC02LjZ6Ii8+CiAgICA8cGF0aCBkPSJNMTUuOCAyLjJsLTQuNCA2LjZMNyA2LjNsLTQuOCA4djUuNWgxNy42VjIuMmgtNHptLTcgMTUuNEg1LjV2LTQuNGgzLjN2NC40em00LjQgMEg5LjhWOS44aDMuNHY3Ljh6bTQuNCAwaC0zLjRWNi41aDMuNHYxMS4xeiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-yaml: url(data:image/svg+xml;base64,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);
-}
-
-/* Icon CSS class declarations */
-
-.jp-AddIcon {
- background-image: var(--jp-icon-add);
-}
-.jp-BugIcon {
- background-image: var(--jp-icon-bug);
-}
-.jp-BuildIcon {
- background-image: var(--jp-icon-build);
-}
-.jp-CaretDownEmptyIcon {
- background-image: var(--jp-icon-caret-down-empty);
-}
-.jp-CaretDownEmptyThinIcon {
- background-image: var(--jp-icon-caret-down-empty-thin);
-}
-.jp-CaretDownIcon {
- background-image: var(--jp-icon-caret-down);
-}
-.jp-CaretLeftIcon {
- background-image: var(--jp-icon-caret-left);
-}
-.jp-CaretRightIcon {
- background-image: var(--jp-icon-caret-right);
-}
-.jp-CaretUpEmptyThinIcon {
- background-image: var(--jp-icon-caret-up-empty-thin);
-}
-.jp-CaretUpIcon {
- background-image: var(--jp-icon-caret-up);
-}
-.jp-CaseSensitiveIcon {
- background-image: var(--jp-icon-case-sensitive);
-}
-.jp-CheckIcon {
- background-image: var(--jp-icon-check);
-}
-.jp-CircleEmptyIcon {
- background-image: var(--jp-icon-circle-empty);
-}
-.jp-CircleIcon {
- background-image: var(--jp-icon-circle);
-}
-.jp-ClearIcon {
- background-image: var(--jp-icon-clear);
-}
-.jp-CloseIcon {
- background-image: var(--jp-icon-close);
-}
-.jp-CodeIcon {
- background-image: var(--jp-icon-code);
-}
-.jp-ConsoleIcon {
- background-image: var(--jp-icon-console);
-}
-.jp-CopyIcon {
- background-image: var(--jp-icon-copy);
-}
-.jp-CopyrightIcon {
- background-image: var(--jp-icon-copyright);
-}
-.jp-CutIcon {
- background-image: var(--jp-icon-cut);
-}
-.jp-DownloadIcon {
- background-image: var(--jp-icon-download);
-}
-.jp-EditIcon {
- background-image: var(--jp-icon-edit);
-}
-.jp-EllipsesIcon {
- background-image: var(--jp-icon-ellipses);
-}
-.jp-ExtensionIcon {
- background-image: var(--jp-icon-extension);
-}
-.jp-FastForwardIcon {
- background-image: var(--jp-icon-fast-forward);
-}
-.jp-FileIcon {
- background-image: var(--jp-icon-file);
-}
-.jp-FileUploadIcon {
- background-image: var(--jp-icon-file-upload);
-}
-.jp-FilterListIcon {
- background-image: var(--jp-icon-filter-list);
-}
-.jp-FolderIcon {
- background-image: var(--jp-icon-folder);
-}
-.jp-Html5Icon {
- background-image: var(--jp-icon-html5);
-}
-.jp-ImageIcon {
- background-image: var(--jp-icon-image);
-}
-.jp-InspectorIcon {
- background-image: var(--jp-icon-inspector);
-}
-.jp-JsonIcon {
- background-image: var(--jp-icon-json);
-}
-.jp-JuliaIcon {
- background-image: var(--jp-icon-julia);
-}
-.jp-JupyterFaviconIcon {
- background-image: var(--jp-icon-jupyter-favicon);
-}
-.jp-JupyterIcon {
- background-image: var(--jp-icon-jupyter);
-}
-.jp-JupyterlabWordmarkIcon {
- background-image: var(--jp-icon-jupyterlab-wordmark);
-}
-.jp-KernelIcon {
- background-image: var(--jp-icon-kernel);
-}
-.jp-KeyboardIcon {
- background-image: var(--jp-icon-keyboard);
-}
-.jp-LauncherIcon {
- background-image: var(--jp-icon-launcher);
-}
-.jp-LineFormIcon {
- background-image: var(--jp-icon-line-form);
-}
-.jp-LinkIcon {
- background-image: var(--jp-icon-link);
-}
-.jp-ListIcon {
- background-image: var(--jp-icon-list);
-}
-.jp-ListingsInfoIcon {
- background-image: var(--jp-icon-listings-info);
-}
-.jp-MarkdownIcon {
- background-image: var(--jp-icon-markdown);
-}
-.jp-NewFolderIcon {
- background-image: var(--jp-icon-new-folder);
-}
-.jp-NotTrustedIcon {
- background-image: var(--jp-icon-not-trusted);
-}
-.jp-NotebookIcon {
- background-image: var(--jp-icon-notebook);
-}
-.jp-NumberingIcon {
- background-image: var(--jp-icon-numbering);
-}
-.jp-OfflineBoltIcon {
- background-image: var(--jp-icon-offline-bolt);
-}
-.jp-PaletteIcon {
- background-image: var(--jp-icon-palette);
-}
-.jp-PasteIcon {
- background-image: var(--jp-icon-paste);
-}
-.jp-PdfIcon {
- background-image: var(--jp-icon-pdf);
-}
-.jp-PythonIcon {
- background-image: var(--jp-icon-python);
-}
-.jp-RKernelIcon {
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-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
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-/**
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-#tab-manager
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-/*-----------------------------------------------------------------------------
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-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
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-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2017, Jupyter Development Team.
-|
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-
-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2016, Jupyter Development Team.
-|
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-|----------------------------------------------------------------------------*/
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-:root {
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- ); /* leave 28px for content */
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-.jp-Toolbar {
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-/* Toolbar buttons */
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-/* This is the div we use to wrap the react component into a Widget */
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- > .jp-Toolbar {
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-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2017, Jupyter Development Team.
-|
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Copyright (c) 2014-2017, PhosphorJS Contributors
-|
-| Distributed under the terms of the BSD 3-Clause License.
-|
-| The full license is in the file LICENSE, distributed with this software.
-|----------------------------------------------------------------------------*/
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-
-/* <DEPRECATED> */ body.p-mod-override-cursor *, /* </DEPRECATED> */
-body.lm-mod-override-cursor * {
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-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2016, Jupyter Development Team.
-|
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
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-.jp-JSONEditor {
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-.jp-JSONEditor-host {
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-.jp-JSONEditor.jp-mod-error .jp-JSONEditor-host {
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-.jp-JSONEditor-commitButton {
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-.jp-JSONEditor-host.jp-mod-focused {
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-.jp-Editor.jp-mod-dropTarget {
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-
-/* BASICS */
-
-.CodeMirror {
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- height: 300px;
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-.CodeMirror-guttermarker { color: black; }
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-/* STOP */
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-.cm-searching {
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-
-/*-----------------------------------------------------------------------------
-| Private CSS variables
-|----------------------------------------------------------------------------*/
-
-:root {
- --jp-private-cell-scrolling-output-offset: 5px;
-}
-
-/*-----------------------------------------------------------------------------
-| Cell
-|----------------------------------------------------------------------------*/
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-/*-----------------------------------------------------------------------------
-| Common input/output
-|----------------------------------------------------------------------------*/
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-.jp-Cell-inputWrapper,
-.jp-Cell-outputWrapper {
- display: flex;
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-}
-
-/* Only input/output areas inside cells */
-.jp-Cell-inputArea,
-.jp-Cell-outputArea {
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-/*-----------------------------------------------------------------------------
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-|----------------------------------------------------------------------------*/
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- */
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-/*-----------------------------------------------------------------------------
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- );
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-/*-----------------------------------------------------------------------------
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-|----------------------------------------------------------------------------*/
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-/*-----------------------------------------------------------------------------
-| MarkdownCell
-|----------------------------------------------------------------------------*/
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-.jp-MarkdownCell:hover .jp-collapseHeadingButton {
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- position: absolute;
- right: 0;
- top: 0;
- bottom: 0;
-}
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Variables
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-
-/*-----------------------------------------------------------------------------
-| Styles
-|----------------------------------------------------------------------------*/
-
-.jp-NotebookPanel-toolbar {
- padding: 2px;
-}
-
-.jp-Toolbar-item.jp-Notebook-toolbarCellType .jp-select-wrapper.jp-mod-focused {
- border: none;
- box-shadow: none;
-}
-
-.jp-Notebook-toolbarCellTypeDropdown select {
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- line-height: 14px;
- border-radius: 0;
- display: block;
-}
-
-.jp-Notebook-toolbarCellTypeDropdown span {
- top: 5px !important;
-}
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Private CSS variables
-|----------------------------------------------------------------------------*/
-
-:root {
- --jp-private-notebook-dragImage-width: 304px;
- --jp-private-notebook-dragImage-height: 36px;
- --jp-private-notebook-selected-color: var(--md-blue-400);
- --jp-private-notebook-active-color: var(--md-green-400);
-}
-
-/*-----------------------------------------------------------------------------
-| Imports
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Notebook
-|----------------------------------------------------------------------------*/
-
-.jp-NotebookPanel {
- display: block;
- height: 100%;
-}
-
-.jp-NotebookPanel.jp-Document {
- min-width: 240px;
- min-height: 120px;
-}
-
-.jp-Notebook {
- padding: var(--jp-notebook-padding);
- outline: none;
- overflow: auto;
- background: var(--jp-layout-color0);
-}
-
-.jp-Notebook.jp-mod-scrollPastEnd::after {
- display: block;
- content: '';
- min-height: var(--jp-notebook-scroll-padding);
-}
-
-.jp-MainAreaWidget-ContainStrict .jp-Notebook * {
- contain: strict;
-}
-
-.jp-Notebook-render * {
- contain: none !important;
-}
-
-.jp-Notebook .jp-Cell {
- overflow: visible;
-}
-
-.jp-Notebook .jp-Cell .jp-InputPrompt {
- cursor: move;
- float: left;
-}
-
-/*-----------------------------------------------------------------------------
-| Notebook state related styling
-|
-| The notebook and cells each have states, here are the possibilities:
-|
-| - Notebook
-| - Command
-| - Edit
-| - Cell
-| - None
-| - Active (only one can be active)
-| - Selected (the cells actions are applied to)
-| - Multiselected (when multiple selected, the cursor)
-| - No outputs
-|----------------------------------------------------------------------------*/
-
-/* Command or edit modes */
-
-.jp-Notebook .jp-Cell:not(.jp-mod-active) .jp-InputPrompt {
- opacity: var(--jp-cell-prompt-not-active-opacity);
- color: var(--jp-cell-prompt-not-active-font-color);
-}
-
-.jp-Notebook .jp-Cell:not(.jp-mod-active) .jp-OutputPrompt {
- opacity: var(--jp-cell-prompt-not-active-opacity);
- color: var(--jp-cell-prompt-not-active-font-color);
-}
-
-/* cell is active */
-.jp-Notebook .jp-Cell.jp-mod-active .jp-Collapser {
- background: var(--jp-brand-color1);
-}
-
-/* cell is dirty */
-.jp-Notebook .jp-Cell.jp-mod-dirty .jp-InputPrompt {
- color: var(--jp-warn-color1);
-}
-.jp-Notebook .jp-Cell.jp-mod-dirty .jp-InputPrompt:before {
- color: var(--jp-warn-color1);
- content: '•';
-}
-
-.jp-Notebook .jp-Cell.jp-mod-active.jp-mod-dirty .jp-Collapser {
- background: var(--jp-warn-color1);
-}
-
-/* collapser is hovered */
-.jp-Notebook .jp-Cell .jp-Collapser:hover {
- box-shadow: var(--jp-elevation-z2);
- background: var(--jp-brand-color1);
- opacity: var(--jp-cell-collapser-not-active-hover-opacity);
-}
-
-/* cell is active and collapser is hovered */
-.jp-Notebook .jp-Cell.jp-mod-active .jp-Collapser:hover {
- background: var(--jp-brand-color0);
- opacity: 1;
-}
-
-/* Command mode */
-
-.jp-Notebook.jp-mod-commandMode .jp-Cell.jp-mod-selected {
- background: var(--jp-notebook-multiselected-color);
-}
-
-.jp-Notebook.jp-mod-commandMode
- .jp-Cell.jp-mod-active.jp-mod-selected:not(.jp-mod-multiSelected) {
- background: transparent;
-}
-
-/* Edit mode */
-
-.jp-Notebook.jp-mod-editMode .jp-Cell.jp-mod-active .jp-InputArea-editor {
- border: var(--jp-border-width) solid var(--jp-cell-editor-active-border-color);
- box-shadow: var(--jp-input-box-shadow);
- background-color: var(--jp-cell-editor-active-background);
-}
-
-/*-----------------------------------------------------------------------------
-| Notebook drag and drop
-|----------------------------------------------------------------------------*/
-
-.jp-Notebook-cell.jp-mod-dropSource {
- opacity: 0.5;
-}
-
-.jp-Notebook-cell.jp-mod-dropTarget,
-.jp-Notebook.jp-mod-commandMode
- .jp-Notebook-cell.jp-mod-active.jp-mod-selected.jp-mod-dropTarget {
- border-top-color: var(--jp-private-notebook-selected-color);
- border-top-style: solid;
- border-top-width: 2px;
-}
-
-.jp-dragImage {
- display: block;
- flex-direction: row;
- width: var(--jp-private-notebook-dragImage-width);
- height: var(--jp-private-notebook-dragImage-height);
- border: var(--jp-border-width) solid var(--jp-cell-editor-border-color);
- background: var(--jp-cell-editor-background);
- overflow: visible;
-}
-
-.jp-dragImage-singlePrompt {
- box-shadow: 2px 2px 4px 0px rgba(0, 0, 0, 0.12);
-}
-
-.jp-dragImage .jp-dragImage-content {
- flex: 1 1 auto;
- z-index: 2;
- font-size: var(--jp-code-font-size);
- font-family: var(--jp-code-font-family);
- line-height: var(--jp-code-line-height);
- padding: var(--jp-code-padding);
- border: var(--jp-border-width) solid var(--jp-cell-editor-border-color);
- background: var(--jp-cell-editor-background-color);
- color: var(--jp-content-font-color3);
- text-align: left;
- margin: 4px 4px 4px 0px;
-}
-
-.jp-dragImage .jp-dragImage-prompt {
- flex: 0 0 auto;
- min-width: 36px;
- color: var(--jp-cell-inprompt-font-color);
- padding: var(--jp-code-padding);
- padding-left: 12px;
- font-family: var(--jp-cell-prompt-font-family);
- letter-spacing: var(--jp-cell-prompt-letter-spacing);
- line-height: 1.9;
- font-size: var(--jp-code-font-size);
- border: var(--jp-border-width) solid transparent;
-}
-
-.jp-dragImage-multipleBack {
- z-index: -1;
- position: absolute;
- height: 32px;
- width: 300px;
- top: 8px;
- left: 8px;
- background: var(--jp-layout-color2);
- border: var(--jp-border-width) solid var(--jp-input-border-color);
- box-shadow: 2px 2px 4px 0px rgba(0, 0, 0, 0.12);
-}
-
-/*-----------------------------------------------------------------------------
-| Cell toolbar
-|----------------------------------------------------------------------------*/
-
-.jp-NotebookTools {
- display: block;
- min-width: var(--jp-sidebar-min-width);
- color: var(--jp-ui-font-color1);
- background: var(--jp-layout-color1);
- /* This is needed so that all font sizing of children done in ems is
- * relative to this base size */
- font-size: var(--jp-ui-font-size1);
- overflow: auto;
-}
-
-.jp-NotebookTools-tool {
- padding: 0px 12px 0 12px;
-}
-
-.jp-ActiveCellTool {
- padding: 12px;
- background-color: var(--jp-layout-color1);
- border-top: none !important;
-}
-
-.jp-ActiveCellTool .jp-InputArea-prompt {
- flex: 0 0 auto;
- padding-left: 0px;
-}
-
-.jp-ActiveCellTool .jp-InputArea-editor {
- flex: 1 1 auto;
- background: var(--jp-cell-editor-background);
- border-color: var(--jp-cell-editor-border-color);
-}
-
-.jp-ActiveCellTool .jp-InputArea-editor .CodeMirror {
- background: transparent;
-}
-
-.jp-MetadataEditorTool {
- flex-direction: column;
- padding: 12px 0px 12px 0px;
-}
-
-.jp-RankedPanel > :not(:first-child) {
- margin-top: 12px;
-}
-
-.jp-KeySelector select.jp-mod-styled {
- font-size: var(--jp-ui-font-size1);
- color: var(--jp-ui-font-color0);
- border: var(--jp-border-width) solid var(--jp-border-color1);
-}
-
-.jp-KeySelector label,
-.jp-MetadataEditorTool label {
- line-height: 1.4;
-}
-
-.jp-NotebookTools .jp-select-wrapper {
- margin-top: 4px;
- margin-bottom: 0px;
-}
-
-.jp-NotebookTools .jp-Collapse {
- margin-top: 16px;
-}
-
-/*-----------------------------------------------------------------------------
-| Presentation Mode (.jp-mod-presentationMode)
-|----------------------------------------------------------------------------*/
-
-.jp-mod-presentationMode .jp-Notebook {
- --jp-content-font-size1: var(--jp-content-presentation-font-size1);
- --jp-code-font-size: var(--jp-code-presentation-font-size);
-}
-
-.jp-mod-presentationMode .jp-Notebook .jp-Cell .jp-InputPrompt,
-.jp-mod-presentationMode .jp-Notebook .jp-Cell .jp-OutputPrompt {
- flex: 0 0 110px;
-}
-
-/*-----------------------------------------------------------------------------
-| Placeholder
-|----------------------------------------------------------------------------*/
-
-.jp-Cell-Placeholder {
- padding-left: 55px;
-}
-
-.jp-Cell-Placeholder-wrapper {
- background: #fff;
- border: 1px solid;
- border-color: #e5e6e9 #dfe0e4 #d0d1d5;
- border-radius: 4px;
- -webkit-border-radius: 4px;
- margin: 10px 15px;
-}
-
-.jp-Cell-Placeholder-wrapper-inner {
- padding: 15px;
- position: relative;
-}
-
-.jp-Cell-Placeholder-wrapper-body {
- background-repeat: repeat;
- background-size: 50% auto;
-}
-
-.jp-Cell-Placeholder-wrapper-body div {
- background: #f6f7f8;
- background-image: -webkit-linear-gradient(
- left,
- #f6f7f8 0%,
- #edeef1 20%,
- #f6f7f8 40%,
- #f6f7f8 100%
- );
- background-repeat: no-repeat;
- background-size: 800px 104px;
- height: 104px;
- position: relative;
-}
-
-.jp-Cell-Placeholder-wrapper-body div {
- position: absolute;
- right: 15px;
- left: 15px;
- top: 15px;
-}
-
-div.jp-Cell-Placeholder-h1 {
- top: 20px;
- height: 20px;
- left: 15px;
- width: 150px;
-}
-
-div.jp-Cell-Placeholder-h2 {
- left: 15px;
- top: 50px;
- height: 10px;
- width: 100px;
-}
-
-div.jp-Cell-Placeholder-content-1,
-div.jp-Cell-Placeholder-content-2,
-div.jp-Cell-Placeholder-content-3 {
- left: 15px;
- right: 15px;
- height: 10px;
-}
-
-div.jp-Cell-Placeholder-content-1 {
- top: 100px;
-}
-
-div.jp-Cell-Placeholder-content-2 {
- top: 120px;
-}
-
-div.jp-Cell-Placeholder-content-3 {
- top: 140px;
-}
-
-</style>
-
- <style type="text/css">
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*
-The following CSS variables define the main, public API for styling JupyterLab.
-These variables should be used by all plugins wherever possible. In other
-words, plugins should not define custom colors, sizes, etc unless absolutely
-necessary. This enables users to change the visual theme of JupyterLab
-by changing these variables.
-
-Many variables appear in an ordered sequence (0,1,2,3). These sequences
-are designed to work well together, so for example, `--jp-border-color1` should
-be used with `--jp-layout-color1`. The numbers have the following meanings:
-
-* 0: super-primary, reserved for special emphasis
-* 1: primary, most important under normal situations
-* 2: secondary, next most important under normal situations
-* 3: tertiary, next most important under normal situations
-
-Throughout JupyterLab, we are mostly following principles from Google's
-Material Design when selecting colors. We are not, however, following
-all of MD as it is not optimized for dense, information rich UIs.
-*/
-
-:root {
- /* Elevation
- *
- * We style box-shadows using Material Design's idea of elevation. These particular numbers are taken from here:
- *
- * https://github.com/material-components/material-components-web
- * https://material-components-web.appspot.com/elevation.html
- */
-
- --jp-shadow-base-lightness: 0;
- --jp-shadow-umbra-color: rgba(
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- 0.2
- );
- --jp-shadow-penumbra-color: rgba(
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- 0.14
- );
- --jp-shadow-ambient-color: rgba(
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- 0.12
- );
- --jp-elevation-z0: none;
- --jp-elevation-z1: 0px 2px 1px -1px var(--jp-shadow-umbra-color),
- 0px 1px 1px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 3px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z2: 0px 3px 1px -2px var(--jp-shadow-umbra-color),
- 0px 2px 2px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 5px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z4: 0px 2px 4px -1px var(--jp-shadow-umbra-color),
- 0px 4px 5px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 10px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z6: 0px 3px 5px -1px var(--jp-shadow-umbra-color),
- 0px 6px 10px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 18px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z8: 0px 5px 5px -3px var(--jp-shadow-umbra-color),
- 0px 8px 10px 1px var(--jp-shadow-penumbra-color),
- 0px 3px 14px 2px var(--jp-shadow-ambient-color);
- --jp-elevation-z12: 0px 7px 8px -4px var(--jp-shadow-umbra-color),
- 0px 12px 17px 2px var(--jp-shadow-penumbra-color),
- 0px 5px 22px 4px var(--jp-shadow-ambient-color);
- --jp-elevation-z16: 0px 8px 10px -5px var(--jp-shadow-umbra-color),
- 0px 16px 24px 2px var(--jp-shadow-penumbra-color),
- 0px 6px 30px 5px var(--jp-shadow-ambient-color);
- --jp-elevation-z20: 0px 10px 13px -6px var(--jp-shadow-umbra-color),
- 0px 20px 31px 3px var(--jp-shadow-penumbra-color),
- 0px 8px 38px 7px var(--jp-shadow-ambient-color);
- --jp-elevation-z24: 0px 11px 15px -7px var(--jp-shadow-umbra-color),
- 0px 24px 38px 3px var(--jp-shadow-penumbra-color),
- 0px 9px 46px 8px var(--jp-shadow-ambient-color);
-
- /* Borders
- *
- * The following variables, specify the visual styling of borders in JupyterLab.
- */
-
- --jp-border-width: 1px;
- --jp-border-color0: var(--md-grey-400);
- --jp-border-color1: var(--md-grey-400);
- --jp-border-color2: var(--md-grey-300);
- --jp-border-color3: var(--md-grey-200);
- --jp-border-radius: 2px;
-
- /* UI Fonts
- *
- * The UI font CSS variables are used for the typography all of the JupyterLab
- * user interface elements that are not directly user generated content.
- *
- * The font sizing here is done assuming that the body font size of --jp-ui-font-size1
- * is applied to a parent element. When children elements, such as headings, are sized
- * in em all things will be computed relative to that body size.
- */
-
- --jp-ui-font-scale-factor: 1.2;
- --jp-ui-font-size0: 0.83333em;
- --jp-ui-font-size1: 13px; /* Base font size */
- --jp-ui-font-size2: 1.2em;
- --jp-ui-font-size3: 1.44em;
-
- --jp-ui-font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Helvetica,
- Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol';
-
- /*
- * Use these font colors against the corresponding main layout colors.
- * In a light theme, these go from dark to light.
- */
-
- /* Defaults use Material Design specification */
- --jp-ui-font-color0: rgba(0, 0, 0, 1);
- --jp-ui-font-color1: rgba(0, 0, 0, 0.87);
- --jp-ui-font-color2: rgba(0, 0, 0, 0.54);
- --jp-ui-font-color3: rgba(0, 0, 0, 0.38);
-
- /*
- * Use these against the brand/accent/warn/error colors.
- * These will typically go from light to darker, in both a dark and light theme.
- */
-
- --jp-ui-inverse-font-color0: rgba(255, 255, 255, 1);
- --jp-ui-inverse-font-color1: rgba(255, 255, 255, 1);
- --jp-ui-inverse-font-color2: rgba(255, 255, 255, 0.7);
- --jp-ui-inverse-font-color3: rgba(255, 255, 255, 0.5);
-
- /* Content Fonts
- *
- * Content font variables are used for typography of user generated content.
- *
- * The font sizing here is done assuming that the body font size of --jp-content-font-size1
- * is applied to a parent element. When children elements, such as headings, are sized
- * in em all things will be computed relative to that body size.
- */
-
- --jp-content-line-height: 1.6;
- --jp-content-font-scale-factor: 1.2;
- --jp-content-font-size0: 0.83333em;
- --jp-content-font-size1: 14px; /* Base font size */
- --jp-content-font-size2: 1.2em;
- --jp-content-font-size3: 1.44em;
- --jp-content-font-size4: 1.728em;
- --jp-content-font-size5: 2.0736em;
-
- /* This gives a magnification of about 125% in presentation mode over normal. */
- --jp-content-presentation-font-size1: 17px;
-
- --jp-content-heading-line-height: 1;
- --jp-content-heading-margin-top: 1.2em;
- --jp-content-heading-margin-bottom: 0.8em;
- --jp-content-heading-font-weight: 500;
-
- /* Defaults use Material Design specification */
- --jp-content-font-color0: rgba(0, 0, 0, 1);
- --jp-content-font-color1: rgba(0, 0, 0, 0.87);
- --jp-content-font-color2: rgba(0, 0, 0, 0.54);
- --jp-content-font-color3: rgba(0, 0, 0, 0.38);
-
- --jp-content-link-color: var(--md-blue-700);
-
- --jp-content-font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI',
- Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji',
- 'Segoe UI Symbol';
-
- /*
- * Code Fonts
- *
- * Code font variables are used for typography of code and other monospaces content.
- */
-
- --jp-code-font-size: 13px;
- --jp-code-line-height: 1.3077; /* 17px for 13px base */
- --jp-code-padding: 5px; /* 5px for 13px base, codemirror highlighting needs integer px value */
- --jp-code-font-family-default: Menlo, Consolas, 'DejaVu Sans Mono', monospace;
- --jp-code-font-family: var(--jp-code-font-family-default);
-
- /* This gives a magnification of about 125% in presentation mode over normal. */
- --jp-code-presentation-font-size: 16px;
-
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- /* General editor styles */
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- );
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-
- /* Icon colors that work well with light or dark backgrounds */
- --jp-icon-contrast-color0: var(--md-purple-600);
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-</style>
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-/* Using table instead of flexbox so that we can use break-inside property */
-/* CSS rules under this comment should not be required anymore after we move to the JupyterLab 4.0 CSS */
-
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-.jp-CodeCell.jp-mod-outputsScrolled .jp-OutputArea-prompt {
- min-width: calc(
- var(--jp-cell-prompt-width) - var(--jp-private-cell-scrolling-output-offset)
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- display: table-cell;
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- <!-- End of mathjax configuration --></head>
-<body class="jp-Notebook" data-jp-theme-light="true" data-jp-theme-name="JupyterLab Light">
-<div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">requests</span>
-<span class="kn">import</span> <span class="nn">datetime</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">pickle</span>
-<span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
-<span class="kn">from</span> <span class="nn">ost</span> <span class="kn">import</span> <span class="n">io</span><span class="p">,</span> <span class="n">seq</span>
-
-<span class="c1"># from Tara code</span>
-<span class="k">def</span> <span class="nf">_get_sequence</span><span class="p">(</span><span class="n">chn</span><span class="p">):</span>
- <span class="sd">"""Get the sequence out of an OST chain."""</span>
- <span class="c1"># initialise</span>
- <span class="n">lst_rn</span> <span class="o">=</span> <span class="n">chn</span><span class="o">.</span><span class="n">residues</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">number</span><span class="o">.</span><span class="n">num</span>
- <span class="n">idx</span> <span class="o">=</span> <span class="mi">1</span>
- <span class="n">sqe</span> <span class="o">=</span> <span class="n">chn</span><span class="o">.</span><span class="n">residues</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">one_letter_code</span>
- <span class="k">if</span> <span class="n">lst_rn</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
- <span class="n">sqe</span> <span class="o">=</span> <span class="s2">"-"</span>
- <span class="n">idx</span> <span class="o">=</span> <span class="mi">0</span>
-
- <span class="k">for</span> <span class="n">res</span> <span class="ow">in</span> <span class="n">chn</span><span class="o">.</span><span class="n">residues</span><span class="p">[</span><span class="n">idx</span><span class="p">:]:</span>
- <span class="n">lst_rn</span> <span class="o">+=</span> <span class="mi">1</span>
- <span class="k">while</span> <span class="n">lst_rn</span> <span class="o">!=</span> <span class="n">res</span><span class="o">.</span><span class="n">number</span><span class="o">.</span><span class="n">num</span><span class="p">:</span>
- <span class="n">sqe</span> <span class="o">+=</span> <span class="s2">"-"</span>
- <span class="n">lst_rn</span> <span class="o">+=</span> <span class="mi">1</span>
- <span class="n">sqe</span> <span class="o">+=</span> <span class="n">res</span><span class="o">.</span><span class="n">one_letter_code</span>
-
- <span class="k">return</span> <span class="n">sqe</span>
-
-<span class="k">def</span> <span class="nf">_check_sequence</span><span class="p">(</span><span class="n">up_ac</span><span class="p">,</span> <span class="n">sequence</span><span class="p">):</span>
- <span class="sd">"""Verify sequence to only contain standard olc."""</span>
- <span class="k">for</span> <span class="n">res</span> <span class="ow">in</span> <span class="n">sequence</span><span class="p">:</span>
- <span class="k">if</span> <span class="n">res</span> <span class="ow">not</span> <span class="ow">in</span> <span class="s2">"ACDEFGHIKLMNPQRSTVWY"</span><span class="p">:</span>
- <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span>
- <span class="s2">"Non-standard aa found in UniProtKB sequence "</span>
- <span class="o">+</span> <span class="sa">f</span><span class="s2">"for entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">': </span><span class="si">{</span><span class="n">res</span><span class="si">}</span><span class="s2">"</span>
- <span class="p">)</span>
-
-<span class="k">def</span> <span class="nf">_fetch_upkb_entry</span><span class="p">(</span><span class="n">up_ac</span><span class="p">):</span>
- <span class="sd">"""Fetch data for an UniProtKB entry."""</span>
- <span class="c1"># This is a simple parser for UniProtKB txt format, instead of breaking it up</span>
- <span class="c1"># into multiple functions, we just allow many many branches & statements,</span>
- <span class="c1"># here.</span>
- <span class="c1"># pylint: disable=too-many-branches,too-many-statements</span>
- <span class="n">data</span> <span class="o">=</span> <span class="p">{}</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_organism"</span><span class="p">]</span> <span class="o">=</span> <span class="s2">""</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]</span> <span class="o">=</span> <span class="s2">""</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_ac"</span><span class="p">]</span> <span class="o">=</span> <span class="n">up_ac</span>
- <span class="n">rspns</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="sa">f</span><span class="s2">"https://www.uniprot.org/uniprot/</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">.txt"</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">rspns</span><span class="o">.</span><span class="n">iter_lines</span><span class="p">(</span><span class="n">decode_unicode</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
- <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"ID "</span><span class="p">):</span>
- <span class="n">sline</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sline</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">5</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Unusual UniProtKB ID line found:</span><span class="se">\n</span><span class="s2">'</span><span class="si">{</span><span class="n">line</span><span class="si">}</span><span class="s2">'"</span><span class="p">)</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_id"</span><span class="p">]</span> <span class="o">=</span> <span class="n">sline</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"OX NCBI_TaxID="</span><span class="p">):</span>
- <span class="c1"># Following strictly the UniProtKB format: 'OX NCBI_TaxID=<ID>;'</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_ncbi_taxid"</span><span class="p">]</span> <span class="o">=</span> <span class="n">line</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="s2">"OX NCBI_TaxID="</span><span class="p">)</span> <span class="p">:</span> <span class="o">-</span><span class="mi">1</span><span class="p">]</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_ncbi_taxid"</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s2">"up_ncbi_taxid"</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">"{"</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"OS "</span><span class="p">):</span>
- <span class="k">if</span> <span class="n">line</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"."</span><span class="p">:</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_organism"</span><span class="p">]</span> <span class="o">+=</span> <span class="n">line</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="s2">"OS "</span><span class="p">)</span> <span class="p">:</span> <span class="o">-</span><span class="mi">1</span><span class="p">]</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_organism"</span><span class="p">]</span> <span class="o">+=</span> <span class="n">line</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="s2">"OS "</span><span class="p">)</span> <span class="p">:</span> <span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="s2">" "</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"SQ "</span><span class="p">):</span>
- <span class="n">sline</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sline</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">8</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Unusual UniProtKB SQ line found:</span><span class="se">\n</span><span class="s2">'</span><span class="si">{</span><span class="n">line</span><span class="si">}</span><span class="s2">'"</span><span class="p">)</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_seqlen"</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">sline</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_crc64"</span><span class="p">]</span> <span class="o">=</span> <span class="n">sline</span><span class="p">[</span><span class="mi">6</span><span class="p">]</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">" "</span><span class="p">):</span>
- <span class="n">sline</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sline</span><span class="p">)</span> <span class="o">></span> <span class="mi">6</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span>
- <span class="s2">"Unusual UniProtKB sequence data line "</span>
- <span class="o">+</span> <span class="sa">f</span><span class="s2">"found:</span><span class="se">\n</span><span class="s2">'</span><span class="si">{</span><span class="n">line</span><span class="si">}</span><span class="s2">'"</span>
- <span class="p">)</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]</span> <span class="o">+=</span> <span class="s2">""</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">sline</span><span class="p">)</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"RP "</span><span class="p">):</span>
- <span class="k">if</span> <span class="s2">"ISOFORM"</span> <span class="ow">in</span> <span class="n">line</span><span class="o">.</span><span class="n">upper</span><span class="p">():</span>
- <span class="ne">RuntimeError</span><span class="p">(</span>
- <span class="sa">f</span><span class="s2">"First ISOFORM found for '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">', needs "</span> <span class="o">+</span> <span class="s2">"handling."</span>
- <span class="p">)</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"DT "</span><span class="p">):</span>
- <span class="c1"># 2012-10-03</span>
- <span class="n">dt_flds</span> <span class="o">=</span> <span class="n">line</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="s2">"DT "</span><span class="p">)</span> <span class="p">:]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">", "</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">dt_flds</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"SEQUENCE VERSION "</span><span class="p">):</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_last_mod"</span><span class="p">]</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span>
- <span class="n">dt_flds</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s2">"</span><span class="si">%d</span><span class="s2">-%b-%Y"</span>
- <span class="p">)</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"GN Name="</span><span class="p">):</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_gn"</span><span class="p">]</span> <span class="o">=</span> <span class="n">line</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="s2">"GN Name="</span><span class="p">)</span> <span class="p">:]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">";"</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_gn"</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s2">"up_gn"</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">"{"</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
-
- <span class="c1"># we have not seen isoforms in the data set, yet, so we just set them to '.'</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_isoform"</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
-
- <span class="k">if</span> <span class="s2">"up_gn"</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No gene name found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="k">if</span> <span class="s2">"up_last_mod"</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No sequence version found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="k">if</span> <span class="s2">"up_crc64"</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No CRC64 value found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No sequence found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="c1"># check that sequence length and CRC64 is correct</span>
- <span class="k">if</span> <span class="n">data</span><span class="p">[</span><span class="s2">"up_seqlen"</span><span class="p">]</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]):</span>
- <span class="n">_abort_msg</span><span class="p">(</span>
- <span class="s2">"Sequence length of SQ line and sequence data differ for "</span>
- <span class="o">+</span> <span class="sa">f</span><span class="s2">"UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">': </span><span class="si">{</span><span class="n">data</span><span class="p">[</span><span class="s1">'up_seqlen'</span><span class="p">]</span><span class="si">}</span><span class="s2"> != "</span>
- <span class="o">+</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="s1">'up_sequence'</span><span class="p">])</span><span class="si">}</span><span class="s2">"</span>
- <span class="p">)</span>
- <span class="n">_check_sequence</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="s2">"up_ac"</span><span class="p">],</span> <span class="n">data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">])</span>
-
- <span class="k">if</span> <span class="s2">"up_id"</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No ID found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="k">if</span> <span class="s2">"up_ncbi_taxid"</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No NCBI taxonomy ID found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="s2">"up_organism"</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No organism species found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
-
- <span class="k">return</span> <span class="n">data</span>
-
-<span class="k">def</span> <span class="nf">_get_upkb_for_sequence</span><span class="p">(</span><span class="n">sqe</span><span class="p">,</span> <span class="n">up_ac</span><span class="p">):</span>
- <span class="sd">"""Get UniProtKB entry data for given sequence."""</span>
- <span class="n">up_data</span> <span class="o">=</span> <span class="n">_fetch_upkb_entry</span><span class="p">(</span><span class="n">up_ac</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">sqe</span> <span class="o">!=</span> <span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]:</span>
- <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span>
- <span class="sa">f</span><span class="s2">"Sequences not equal from file: </span><span class="si">{</span><span class="n">sqe</span><span class="si">}</span><span class="s2">, from UniProtKB: "</span>
- <span class="o">+</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">up_data</span><span class="p">[</span><span class="s1">'up_sequence'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span>
- <span class="p">)</span>
-
- <span class="k">return</span> <span class="n">up_data</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [2]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">_get_ncbi_sequence</span><span class="p">(</span><span class="n">ncbi_ac</span><span class="p">):</span>
- <span class="sd">"""Fetch OST sequence object from NCBI web service."""</span>
- <span class="c1"># src: https://www.ncbi.nlm.nih.gov/books/NBK25500/#_chapter1_Downloading_Full_Records_</span>
- <span class="n">rspns</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="sa">f</span><span class="s2">"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/"</span> \
- <span class="sa">f</span><span class="s2">"efetch.fcgi?db=protein&id=</span><span class="si">{</span><span class="n">ncbi_ac</span><span class="si">}</span><span class="s2">"</span> \
- <span class="sa">f</span><span class="s2">"&rettype=fasta&retmode=text"</span><span class="p">)</span>
- <span class="k">return</span> <span class="n">io</span><span class="o">.</span><span class="n">SequenceFromString</span><span class="p">(</span><span class="n">rspns</span><span class="o">.</span><span class="n">text</span><span class="p">,</span> <span class="s2">"fasta"</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [3]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># s = _get_ncbi_sequence("CAD2068351.1")</span>
-<span class="c1"># up_data = _fetch_upkb_entry("A0A485PQD1")</span>
-<span class="c1"># print(s.name, s, len(s), up_data["up_sequence"] == str(s))</span>
-<span class="c1"># up_data</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [4]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check USDA data</span>
-<span class="c1"># metadata_file = "./OneDrive-Part/ASFV-G_proteome_accessions.csv"</span>
-<span class="c1"># pdb_dir = "./OneDrive-Part/AlphaFoldSimple"</span>
-<span class="n">metadata_file</span> <span class="o">=</span> <span class="s2">"./2022-08-22_updates/ASFV-G_proteome_accessions.csv"</span>
-<span class="n">pdb_dir</span> <span class="o">=</span> <span class="s2">"./2022-08-22_updates/AlphaFold-RENAME"</span>
-<span class="n">pkl_dir</span> <span class="o">=</span> <span class="s2">"./OneDrive-Part/PickleFiles"</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [5]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">metadata</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">metadata_file</span><span class="p">)</span>
-<span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">Protein</span><span class="p">))</span> <span class="o">==</span> <span class="n">metadata</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-<span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="p">[</span><span class="s2">"Associated PDB"</span><span class="p">]))</span> <span class="o">==</span> <span class="n">metadata</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-<span class="n">metadata</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
-
-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt">Out[5]:</div>
-
-
-
-<div class="jp-RenderedHTMLCommon jp-RenderedHTML jp-OutputArea-output jp-OutputArea-executeResult" data-mime-type="text/html">
-<div>
-<style scoped>
- .dataframe tbody tr th:only-of-type {
- vertical-align: middle;
- }
-
- .dataframe tbody tr th {
- vertical-align: top;
- }
-
- .dataframe thead th {
- text-align: right;
- }
-</style>
-<table border="1" class="dataframe">
- <thead>
- <tr style="text-align: right;">
- <th></th>
- <th>Protein</th>
- <th>Associated PDB</th>
- <th>NCBI_Accession</th>
- <th>UniProt_ID</th>
- <th>_struct.title</th>
- <th>_struct.pdbx_model_detail</th>
- <th>ranking debugg model ID</th>
- <th>notes</th>
- </tr>
- </thead>
- <tbody>
- <tr>
- <th>0</th>
- <td>285L</td>
- <td>285L.pdb</td>
- <td>CAD2068351.1</td>
- <td>A0A485PQD1</td>
- <td>ASFV-G 285L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_1_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>1</th>
- <td>A104R</td>
- <td>A104R.pdb</td>
- <td>CAD2068395.1</td>
- <td>A0A0A1E0L7</td>
- <td>ASFV-G A104R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>2</th>
- <td>A118R</td>
- <td>A118R.pdb</td>
- <td>CAD2068397.1</td>
- <td>A0A2X0RVA9</td>
- <td>ASFV-G A118R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_1_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>3</th>
- <td>A137R</td>
- <td>A137R.pdb</td>
- <td>CAD2068404.1</td>
- <td>A0A2X0THQ0</td>
- <td>ASFV-G A137R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>4</th>
- <td>A151R</td>
- <td>A151R.pdb</td>
- <td>CAD2068398.1</td>
- <td>A0A2X0TC55</td>
- <td>ASFV-G A151R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>...</th>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- </tr>
- <tr>
- <th>192</th>
- <td>QP509L</td>
- <td>QP509L.pdb</td>
- <td>CAD2068484.1</td>
- <td>A0A2X0THX2</td>
- <td>ASFV-G QP509L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>NaN</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>193</th>
- <td>R298L</td>
- <td>R298L.pdb</td>
- <td>CAD2068482.1</td>
- <td>A0A2X0SE42</td>
- <td>ASFV-G R298L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>194</th>
- <td>S183L</td>
- <td>S183L.pdb</td>
- <td>CAD2068472.1</td>
- <td>A0A2X0SE34</td>
- <td>ASFV-G S183L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>195</th>
- <td>S273R</td>
- <td>S273R.pdb</td>
- <td>CAD2068473.1</td>
- <td>A0A2X0TKM5</td>
- <td>ASFV-G S273R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>196</th>
- <td>X69R</td>
- <td>X69R.pdb</td>
- <td>CAD2068372.1</td>
- <td>A0A2X0TKC7</td>
- <td>ASFV-G X69R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- </tr>
- </tbody>
-</table>
-<p>197 rows × 8 columns</p>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
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-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [10]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># compare new with old</span>
-<span class="n">metadata_old</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="s2">"./OneDrive-Part/ASFV-G_proteome_accessions.csv"</span><span class="p">)</span>
-<span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">"NCBI_Accession"</span><span class="p">,</span> <span class="s2">"UniProt_ID"</span><span class="p">,</span> <span class="s2">"_struct.title "</span><span class="p">]:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
- <span class="n">tsto</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata_old</span><span class="p">[</span><span class="n">key</span><span class="p">])</span>
- <span class="n">tstm</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="p">[</span><span class="n">key</span><span class="p">])</span>
- <span class="nb">print</span><span class="p">(</span><span class="s2">"ONLY IN OLD:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">tsto</span> <span class="o">-</span> <span class="n">tstm</span><span class="p">))</span>
- <span class="nb">print</span><span class="p">(</span><span class="s2">"ONLY IN NEW:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">tstm</span> <span class="o">-</span> <span class="n">tsto</span><span class="p">))</span>
-</pre></div>
-
- </div>
-</div>
-</div>
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-
-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>NCBI_Accession
-ONLY IN OLD: []
-ONLY IN NEW: []
-UniProt_ID
-ONLY IN OLD: []
-ONLY IN NEW: []
-_struct.title
-ONLY IN OLD: []
-ONLY IN NEW: []
-</pre>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
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-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [7]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">pdb_files</span> <span class="o">=</span> <span class="p">[</span><span class="n">f</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">listdir</span><span class="p">(</span><span class="n">pdb_dir</span><span class="p">))</span> <span class="k">if</span> <span class="n">f</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">".pdb"</span><span class="p">)]</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [19]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check names</span>
-<span class="n">pdb_file_split</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">f</span><span class="p">)</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">pdb_files</span><span class="p">]</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [9]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">tstp</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">pdb_files</span><span class="p">)</span>
-<span class="n">tstm</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="p">[</span><span class="s2">"Associated PDB"</span><span class="p">])</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"ONLY AS PDB:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">tstp</span> <span class="o">-</span> <span class="n">tstm</span><span class="p">))</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"ONLY IN METADATA:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">tstm</span> <span class="o">-</span> <span class="n">tstp</span><span class="p">))</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
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-<div class="jp-OutputArea jp-Cell-outputArea">
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-<div class="jp-OutputArea-child">
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- <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
-
-
-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>ONLY AS PDB: []
-ONLY IN METADATA: []
-</pre>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [10]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">tstp</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">fs</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">fs</span> <span class="ow">in</span> <span class="n">pdb_file_split</span><span class="p">)</span>
-<span class="n">tstm</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">Protein</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"ONLY AS PDB:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">tstp</span> <span class="o">-</span> <span class="n">tstm</span><span class="p">))</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"ONLY IN METADATA:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">tstm</span> <span class="o">-</span> <span class="n">tstp</span><span class="p">))</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
-
-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
-
-
-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>ONLY AS PDB: []
-ONLY IN METADATA: []
-</pre>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [11]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># can use either Protein or PDB name as index</span>
-<span class="n">metadata</span> <span class="o">=</span> <span class="n">metadata</span><span class="o">.</span><span class="n">set_index</span><span class="p">(</span><span class="s2">"Protein"</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [13]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># NOTE: stupid space there...</span>
-<span class="n">metadata</span><span class="p">[</span><span class="n">metadata</span><span class="p">[</span><span class="s2">"_struct.title "</span><span class="p">]</span><span class="o">.</span><span class="n">isna</span><span class="p">()]</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
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-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt">Out[13]:</div>
-
-
-
-<div class="jp-RenderedHTMLCommon jp-RenderedHTML jp-OutputArea-output jp-OutputArea-executeResult" data-mime-type="text/html">
-<div>
-<style scoped>
- .dataframe tbody tr th:only-of-type {
- vertical-align: middle;
- }
-
- .dataframe tbody tr th {
- vertical-align: top;
- }
-
- .dataframe thead th {
- text-align: right;
- }
-</style>
-<table border="1" class="dataframe">
- <thead>
- <tr style="text-align: right;">
- <th></th>
- <th>Protein</th>
- <th>Associated PDB</th>
- <th>NCBI_Accession</th>
- <th>UniProt_ID</th>
- <th>_struct.title</th>
- <th>_struct.pdbx_model_detail</th>
- <th>ranking debugg model ID</th>
- <th>notes</th>
- </tr>
- </thead>
- <tbody>
- </tbody>
-</table>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [14]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">metadata</span><span class="p">[</span><span class="n">metadata</span><span class="p">[</span><span class="s2">"_struct.pdbx_model_detail"</span><span class="p">]</span><span class="o">.</span><span class="n">isna</span><span class="p">()]</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
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-<div class="jp-OutputArea jp-Cell-outputArea">
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-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt">Out[14]:</div>
-
-
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-<div class="jp-RenderedHTMLCommon jp-RenderedHTML jp-OutputArea-output jp-OutputArea-executeResult" data-mime-type="text/html">
-<div>
-<style scoped>
- .dataframe tbody tr th:only-of-type {
- vertical-align: middle;
- }
-
- .dataframe tbody tr th {
- vertical-align: top;
- }
-
- .dataframe thead th {
- text-align: right;
- }
-</style>
-<table border="1" class="dataframe">
- <thead>
- <tr style="text-align: right;">
- <th></th>
- <th>Protein</th>
- <th>Associated PDB</th>
- <th>NCBI_Accession</th>
- <th>UniProt_ID</th>
- <th>_struct.title</th>
- <th>_struct.pdbx_model_detail</th>
- <th>ranking debugg model ID</th>
- <th>notes</th>
- </tr>
- </thead>
- <tbody>
- </tbody>
-</table>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [15]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">metadata</span><span class="p">[</span><span class="o">~</span><span class="n">metadata</span><span class="o">.</span><span class="n">notes</span><span class="o">.</span><span class="n">isna</span><span class="p">()]</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
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-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt">Out[15]:</div>
-
-
-
-<div class="jp-RenderedHTMLCommon jp-RenderedHTML jp-OutputArea-output jp-OutputArea-executeResult" data-mime-type="text/html">
-<div>
-<style scoped>
- .dataframe tbody tr th:only-of-type {
- vertical-align: middle;
- }
-
- .dataframe tbody tr th {
- vertical-align: top;
- }
-
- .dataframe thead th {
- text-align: right;
- }
-</style>
-<table border="1" class="dataframe">
- <thead>
- <tr style="text-align: right;">
- <th></th>
- <th>Protein</th>
- <th>Associated PDB</th>
- <th>NCBI_Accession</th>
- <th>UniProt_ID</th>
- <th>_struct.title</th>
- <th>_struct.pdbx_model_detail</th>
- <th>ranking debugg model ID</th>
- <th>notes</th>
- </tr>
- </thead>
- <tbody>
- <tr>
- <th>58</th>
- <td>CP2475L_p14</td>
- <td>CP2475L_p14.pdb</td>
- <td>CAD2068454.1</td>
- <td>A0A2X0THU5</td>
- <td>ASFV-G CP2475L p14</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>protein p14 from the pp220 polyprotein encoded...</td>
- </tr>
- <tr>
- <th>59</th>
- <td>CP2475L_p34</td>
- <td>CP2475L_p34.pdb</td>
- <td>CAD2068454.1</td>
- <td>A0A2X0THU5</td>
- <td>ASFV-G CP2475L p34</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>protein p34 from the pp220 polyprotein encoded...</td>
- </tr>
- <tr>
- <th>60</th>
- <td>CP2475L_p37</td>
- <td>CP2475L_p37.pdb</td>
- <td>CAD2068454.1</td>
- <td>A0A2X0THU5</td>
- <td>ASFV-G CP2475L p37</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>protein p37 from the pp220 polyprotein encoded...</td>
- </tr>
- <tr>
- <th>61</th>
- <td>CP2475L_p150</td>
- <td>CP2475L_p150.pdb</td>
- <td>CAD2068454.1</td>
- <td>A0A2X0THU5</td>
- <td>ASFV-G CP2475L p150</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_1_pred_0</td>
- <td>protein p150 from the pp220 polyprotein encode...</td>
- </tr>
- <tr>
- <th>62</th>
- <td>CP2475L_p5</td>
- <td>CP2475L_p5.pdb</td>
- <td>CAD2068454.1</td>
- <td>A0A2X0THU5</td>
- <td>ASFV-G CP2475L p5</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>protein p5 from the pp220 polyprotein encoded ...</td>
- </tr>
- <tr>
- <th>69</th>
- <td>D250R</td>
- <td>D250R.pdb</td>
- <td>CAD2068464.1</td>
- <td>A0A2X0THV3</td>
- <td>ASFV-G D250R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>Mislabled on NCBI and Uniport as D205R</td>
- </tr>
- <tr>
- <th>76</th>
- <td>DP79L</td>
- <td>DP79L.pdb</td>
- <td>CAD2068466.1</td>
- <td>A0A0A1E158</td>
- <td>ASFV-G DP79L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>Mislabled on Uniprot as D79L</td>
- </tr>
- <tr>
- <th>111</th>
- <td>hypothetical_01</td>
- <td>hypothetical_01.pdb</td>
- <td>CAD2068367.1</td>
- <td>A0A485PU43</td>
- <td>ASFV-G hypothetical_01</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_5_pred_0</td>
- <td>labeled as hypothetical on NCBI and Uniprot</td>
- </tr>
- <tr>
- <th>112</th>
- <td>hypothetical_02</td>
- <td>hypothetical_02.pdb</td>
- <td>CAD2068400.1</td>
- <td>A0A485PQI3</td>
- <td>ASFV-G hypothetical_02</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>labeled as hypthetical on NCBI and Uniprot</td>
- </tr>
- <tr>
- <th>113</th>
- <td>hypothetical_03</td>
- <td>hypothetical_03.pdb</td>
- <td>CAD2068512.1</td>
- <td>A0A485PZB7</td>
- <td>ASFV-G hypothetical_03</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>labeled as hypthetical on NCBI and Uniprot</td>
- </tr>
- </tbody>
-</table>
-</div>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># tst = metadata.loc["hypothetical_03"]</span>
-<span class="c1"># s = _get_ncbi_sequence(tst.NCBI_Accession)</span>
-<span class="c1"># up_data = _fetch_upkb_entry(tst.UniProt_ID)</span>
-<span class="c1"># print(s.name, s, len(s), up_data["up_sequence"] == str(s))</span>
-<span class="c1"># up_data</span>
-
-<span class="c1"># checked all the one above manually and ok as stated (best to add to model_detail!)</span>
-</pre></div>
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-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check model numbers</span>
-<span class="n">tst</span> <span class="o">=</span> <span class="n">metadata</span><span class="p">[</span><span class="s2">"ranking debugg model ID"</span><span class="p">]</span>
-<span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">mdl_id</span> <span class="ow">in</span> <span class="n">tst</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
- <span class="n">mdl_num</span> <span class="o">=</span> <span class="kc">None</span>
- <span class="k">if</span> <span class="nb">type</span><span class="p">(</span><span class="n">mdl_id</span><span class="p">)</span> <span class="o">==</span> <span class="nb">str</span><span class="p">:</span>
- <span class="n">mdl_id_split</span> <span class="o">=</span> <span class="n">mdl_id</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'_'</span><span class="p">)</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">mdl_id_split</span><span class="p">)</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
- <span class="n">mdl_num</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">mdl_id_split</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
- <span class="k">if</span> <span class="ow">not</span> <span class="n">mdl_num</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="n">mdl_id</span><span class="p">)</span>
- <span class="k">elif</span> <span class="n">mdl_num</span> <span class="ow">not</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">6</span><span class="p">):</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="n">mdl_id</span><span class="p">,</span> <span class="n">mdl_num</span><span class="p">)</span>
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-<pre>QP509L nan
-</pre>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [14]:</div>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">pkl_files</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">listdir</span><span class="p">(</span><span class="n">pkl_dir</span><span class="p">)</span>
-<span class="k">for</span> <span class="n">pkl_file</span> <span class="ow">in</span> <span class="n">pkl_files</span><span class="p">:</span>
- <span class="n">protein</span> <span class="o">=</span> <span class="n">pkl_file</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'_'</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
- <span class="k">assert</span> <span class="n">protein</span> <span class="ow">in</span> <span class="n">metadata</span><span class="o">.</span><span class="n">index</span>
- <span class="k">assert</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">pdb_dir</span><span class="p">,</span> <span class="n">protein</span> <span class="o">+</span> <span class="s2">".pdb"</span><span class="p">))</span>
-<span class="n">pkl_file</span> <span class="o">=</span> <span class="n">pkl_files</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-</pre></div>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">model_data</span> <span class="o">=</span> <span class="n">pickle</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="nb">open</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">pkl_dir</span><span class="p">,</span> <span class="n">pkl_file</span><span class="p">),</span> <span class="s2">"rb"</span><span class="p">))</span>
-</pre></div>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">model_data</span><span class="o">.</span><span class="n">keys</span><span class="p">()</span>
-<span class="c1"># NOTE: only pLDDT in here; may as well use the ones from the PDB file...</span>
-</pre></div>
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-<pre>dict_keys(['distogram', 'experimentally_resolved', 'masked_msa', 'predicted_lddt', 'structure_module', 'plddt', 'ranking_confidence'])</pre>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [17]:</div>
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- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="k">for</span> <span class="n">pkl_file</span> <span class="ow">in</span> <span class="n">pkl_files</span><span class="p">:</span>
- <span class="c1"># GET pLDDT from PDB file</span>
- <span class="n">protein</span> <span class="o">=</span> <span class="n">pkl_file</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'_'</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
- <span class="n">ent</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">LoadPDB</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">pdb_dir</span><span class="p">,</span> <span class="n">protein</span> <span class="o">+</span> <span class="s2">".pdb"</span><span class="p">))</span>
- <span class="n">bfactors</span> <span class="o">=</span> <span class="p">[]</span>
- <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">ent</span><span class="o">.</span><span class="n">atoms</span><span class="p">:</span>
- <span class="n">res_idx</span> <span class="o">=</span> <span class="n">a</span><span class="o">.</span><span class="n">residue</span><span class="o">.</span><span class="n">number</span><span class="o">.</span><span class="n">num</span> <span class="o">-</span> <span class="mi">1</span>
- <span class="k">assert</span> <span class="n">res_idx</span> <span class="o"><=</span> <span class="nb">len</span><span class="p">(</span><span class="n">bfactors</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">res_idx</span> <span class="o"><</span> <span class="nb">len</span><span class="p">(</span><span class="n">bfactors</span><span class="p">):</span>
- <span class="k">assert</span> <span class="n">a</span><span class="o">.</span><span class="n">b_factor</span> <span class="o">==</span> <span class="n">bfactors</span><span class="p">[</span><span class="n">res_idx</span><span class="p">]</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">bfactors</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">a</span><span class="o">.</span><span class="n">b_factor</span><span class="p">)</span>
- <span class="c1"># COMPARE with pickled one</span>
- <span class="n">model_data</span> <span class="o">=</span> <span class="n">pickle</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="nb">open</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">pkl_dir</span><span class="p">,</span> <span class="n">pkl_file</span><span class="p">),</span> <span class="s2">"rb"</span><span class="p">))</span>
- <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">bfactors</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">model_data</span><span class="p">[</span><span class="s2">"plddt"</span><span class="p">])</span>
- <span class="n">b1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">round</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">bfactors</span><span class="p">),</span> <span class="mi">2</span><span class="p">)</span>
- <span class="n">b2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">round</span><span class="p">(</span><span class="n">model_data</span><span class="p">[</span><span class="s2">"plddt"</span><span class="p">],</span> <span class="mi">2</span><span class="p">)</span>
- <span class="n">d_bf</span> <span class="o">=</span> <span class="n">b1</span> <span class="o">-</span> <span class="n">b2</span>
- <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="n">d_bf</span><span class="p">):</span>
- <span class="n">nz_idx</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nonzero</span><span class="p">(</span><span class="n">d_bf</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
- <span class="n">len_nz_idx</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">nz_idx</span><span class="p">)</span>
- <span class="n">nz_idx</span> <span class="o">=</span> <span class="n">nz_idx</span><span class="p">[:</span><span class="mi">5</span><span class="p">]</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="n">len_nz_idx</span><span class="p">,</span> <span class="n">nz_idx</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">d_bf</span><span class="p">[</span><span class="n">nz_idx</span><span class="p">],</span> <span class="n">b1</span><span class="p">[</span><span class="n">nz_idx</span><span class="p">],</span> <span class="n">b2</span><span class="p">[</span><span class="n">nz_idx</span><span class="p">])</span>
-</pre></div>
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-<pre>A137R 137 [1 2 3 4 5] [-15.18 -6.81 -4.82 -12.5 -3.61] [27.34 27.25 34.49 28.27 31.02] [42.52 34.06 39.31 40.77 34.63]
-A151R 151 [1 2 3 4 5] [-1.57 -5.29 -3.63 -4.76 -6.1 ] [34.45 31.08 34.97 41.78 52.73] [36.02 36.37 38.6 46.54 58.83]
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [20]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">_check_subset</span><span class="p">(</span><span class="n">s1</span><span class="p">,</span> <span class="n">s2</span><span class="p">):</span>
- <span class="c1"># check if s2 is uniquely contained in s1</span>
- <span class="c1"># (and if so, returns values for seq_db_align_begin & seq_db_align_end)</span>
- <span class="k">if</span> <span class="n">s1</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="n">s2</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
- <span class="n">align_begin</span> <span class="o">=</span> <span class="n">s1</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="n">s2</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span>
- <span class="n">align_end</span> <span class="o">=</span> <span class="n">align_begin</span> <span class="o">+</span> <span class="nb">len</span><span class="p">(</span><span class="n">s2</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span>
- <span class="k">return</span> <span class="n">align_begin</span><span class="p">,</span> <span class="n">align_end</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="k">return</span> <span class="kc">None</span>
-</pre></div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [21]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check shared ones</span>
-<span class="k">for</span> <span class="n">protein</span><span class="p">,</span> <span class="n">pdb_ext</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">pdb_file_split</span><span class="p">):</span>
- <span class="k">if</span> <span class="n">protein</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">metadata</span><span class="o">.</span><span class="n">index</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="s2">"SKIPPING"</span><span class="p">,</span> <span class="n">protein</span><span class="p">)</span>
- <span class="k">continue</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">row</span> <span class="o">=</span> <span class="n">metadata</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">protein</span><span class="p">]</span>
- <span class="n">pdb_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">pdb_dir</span><span class="p">,</span> <span class="n">protein</span> <span class="o">+</span> <span class="n">pdb_ext</span><span class="p">)</span>
- <span class="n">ent</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">LoadPDB</span><span class="p">(</span><span class="n">pdb_path</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">ent</span><span class="o">.</span><span class="n">chain_count</span> <span class="o">==</span> <span class="mi">1</span>
- <span class="n">sqe</span> <span class="o">=</span> <span class="n">_get_sequence</span><span class="p">(</span><span class="n">ent</span><span class="o">.</span><span class="n">chains</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
- <span class="n">s_ncbi</span> <span class="o">=</span> <span class="n">_get_ncbi_sequence</span><span class="p">(</span><span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">)</span>
- <span class="n">up_data</span> <span class="o">=</span> <span class="n">_fetch_upkb_entry</span><span class="p">(</span><span class="n">row</span><span class="o">.</span><span class="n">UniProt_ID</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]</span> <span class="o">!=</span> <span class="nb">str</span><span class="p">(</span><span class="n">s_ncbi</span><span class="p">):</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="s2">"inconsistent UP/NCBI sequences"</span><span class="p">,</span> <span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">],</span> <span class="nb">str</span><span class="p">(</span><span class="n">s_ncbi</span><span class="p">))</span>
- <span class="k">if</span> <span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]</span> <span class="o">!=</span> <span class="n">sqe</span><span class="p">:</span>
- <span class="n">tst</span> <span class="o">=</span> <span class="n">_check_subset</span><span class="p">(</span><span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">],</span> <span class="n">sqe</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">tst</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="s2">"PDB seq. is subset of UP"</span><span class="p">,</span> <span class="n">tst</span><span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="s2">"inconsistent UP/PDB sequences"</span><span class="p">,</span> <span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">],</span> <span class="n">sqe</span><span class="p">)</span>
- <span class="k">if</span> <span class="nb">str</span><span class="p">(</span><span class="n">s_ncbi</span><span class="p">)</span> <span class="o">!=</span> <span class="n">sqe</span><span class="p">:</span>
- <span class="n">tst</span> <span class="o">=</span> <span class="n">_check_subset</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">s_ncbi</span><span class="p">),</span> <span class="n">sqe</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">tst</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="s2">"PDB seq. is subset of NCBI"</span><span class="p">,</span> <span class="n">tst</span><span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="s2">"inconsistent NCBI/PDB sequences"</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">s_ncbi</span><span class="p">),</span> <span class="n">sqe</span><span class="p">)</span>
-</pre></div>
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-<pre>CP2475L_p14 PDB seq. is subset of UP (369, 522)
-CP2475L_p14 PDB seq. is subset of NCBI (369, 522)
-CP2475L_p150 PDB seq. is subset of UP (894, 2476)
-CP2475L_p150 PDB seq. is subset of NCBI (894, 2476)
-CP2475L_p34 PDB seq. is subset of UP (45, 368)
-CP2475L_p34 PDB seq. is subset of NCBI (45, 368)
-CP2475L_p37 PDB seq. is subset of UP (523, 893)
-CP2475L_p37 PDB seq. is subset of NCBI (523, 893)
-CP2475L_p5 PDB seq. is subset of UP (2, 39)
-CP2475L_p5 PDB seq. is subset of NCBI (2, 39)
-</pre>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check QP509L (take pLDDT from unrelaxed)</span>
-<span class="n">ent_unr</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">LoadPDB</span><span class="p">(</span><span class="s2">"./OneDrive-Part/QP509L-unrelaxed.pdb"</span><span class="p">)</span>
-<span class="n">ent_rel</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">LoadPDB</span><span class="p">(</span><span class="s2">"./OneDrive-Part/AlphaFoldSimple/QP509L.pdb"</span><span class="p">)</span>
-<span class="c1"># NOTE: ent_rel has hydrogens and no b_factors and no chain name!</span>
-<span class="nb">print</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">a</span><span class="o">.</span><span class="n">occupancy</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">ent_rel</span><span class="o">.</span><span class="n">atoms</span><span class="p">),</span> <span class="nb">set</span><span class="p">(</span><span class="n">a</span><span class="o">.</span><span class="n">b_factor</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">ent_rel</span><span class="o">.</span><span class="n">atoms</span><span class="p">))</span>
-<span class="n">ev_rel</span> <span class="o">=</span> <span class="n">ent_rel</span><span class="o">.</span><span class="n">Select</span><span class="p">(</span><span class="s2">"ele!=H"</span><span class="p">)</span>
-<span class="n">ev_atoms</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">a</span><span class="o">.</span><span class="n">qualified_name</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">ev_rel</span><span class="o">.</span><span class="n">atoms</span><span class="p">)</span>
-<span class="n">eu_atoms</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">a</span><span class="o">.</span><span class="n">qualified_name</span><span class="p">[</span><span class="mi">2</span><span class="p">:]</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">ent_unr</span><span class="o">.</span><span class="n">atoms</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"IN UNRELAXED:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">eu_atoms</span> <span class="o">-</span> <span class="n">ev_atoms</span><span class="p">))</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"IN RELAXED:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">ev_atoms</span> <span class="o">-</span> <span class="n">eu_atoms</span><span class="p">))</span>
-</pre></div>
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-<pre>{1.0} {0.0}
-IN UNRELAXED: ['ILE10.CD1', 'ILE108.CD1', 'ILE12.CD1', 'ILE132.CD1', 'ILE134.CD1', 'ILE136.CD1', 'ILE137.CD1', 'ILE147.CD1', 'ILE153.CD1', 'ILE155.CD1', 'ILE158.CD1', 'ILE191.CD1', 'ILE194.CD1', 'ILE195.CD1', 'ILE228.CD1', 'ILE232.CD1', 'ILE237.CD1', 'ILE254.CD1', 'ILE255.CD1', 'ILE256.CD1', 'ILE279.CD1', 'ILE293.CD1', 'ILE300.CD1', 'ILE303.CD1', 'ILE313.CD1', 'ILE342.CD1', 'ILE343.CD1', 'ILE344.CD1', 'ILE354.CD1', 'ILE368.CD1', 'ILE369.CD1', 'ILE393.CD1', 'ILE394.CD1', 'ILE4.CD1', 'ILE405.CD1', 'ILE413.CD1', 'ILE414.CD1', 'ILE426.CD1', 'ILE430.CD1', 'ILE442.CD1', 'ILE446.CD1', 'ILE46.CD1', 'ILE463.CD1', 'ILE471.CD1', 'ILE48.CD1', 'ILE489.CD1', 'ILE5.CD1', 'ILE61.CD1', 'ILE65.CD1', 'LYS509.O']
-IN RELAXED: ['ILE10.CD', 'ILE108.CD', 'ILE12.CD', 'ILE132.CD', 'ILE134.CD', 'ILE136.CD', 'ILE137.CD', 'ILE147.CD', 'ILE153.CD', 'ILE155.CD', 'ILE158.CD', 'ILE191.CD', 'ILE194.CD', 'ILE195.CD', 'ILE228.CD', 'ILE232.CD', 'ILE237.CD', 'ILE254.CD', 'ILE255.CD', 'ILE256.CD', 'ILE279.CD', 'ILE293.CD', 'ILE300.CD', 'ILE303.CD', 'ILE313.CD', 'ILE342.CD', 'ILE343.CD', 'ILE344.CD', 'ILE354.CD', 'ILE368.CD', 'ILE369.CD', 'ILE393.CD', 'ILE394.CD', 'ILE4.CD', 'ILE405.CD', 'ILE413.CD', 'ILE414.CD', 'ILE426.CD', 'ILE430.CD', 'ILE442.CD', 'ILE446.CD', 'ILE46.CD', 'ILE463.CD', 'ILE471.CD', 'ILE48.CD', 'ILE489.CD', 'ILE5.CD', 'ILE61.CD', 'ILE65.CD', 'LYS509.O1', 'LYS509.O2']
-</pre>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [23]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># can we fix it internally?</span>
-<span class="kn">import</span> <span class="nn">ost</span>
-<span class="kn">from</span> <span class="nn">ost</span> <span class="kn">import</span> <span class="n">testutils</span><span class="p">,</span> <span class="n">conop</span>
-<span class="kn">from</span> <span class="nn">ost.mol</span> <span class="kn">import</span> <span class="n">mm</span>
-<span class="c1"># setup conop</span>
-<span class="n">testutils</span><span class="o">.</span><span class="n">SetDefaultCompoundLib</span><span class="p">()</span>
-<span class="n">processor</span> <span class="o">=</span> <span class="n">conop</span><span class="o">.</span><span class="n">RuleBasedProcessor</span><span class="p">(</span><span class="n">conop</span><span class="o">.</span><span class="n">GetDefaultLib</span><span class="p">())</span>
-<span class="c1"># map with MM function</span>
-<span class="n">mm</span><span class="o">.</span><span class="n">MMModeller</span><span class="o">.</span><span class="n">AssignPDBNaming</span><span class="p">(</span><span class="n">ent_rel</span><span class="p">)</span>
-<span class="c1"># check processing</span>
-<span class="n">ost</span><span class="o">.</span><span class="n">PushVerbosityLevel</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span>
-<span class="n">processor</span><span class="o">.</span><span class="n">Process</span><span class="p">(</span><span class="n">ent_rel</span><span class="p">)</span>
-<span class="n">ost</span><span class="o">.</span><span class="n">PopVerbosityLevel</span><span class="p">()</span>
-</pre></div>
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-<pre>residue LYS509 contains unknown atom O2
-residue LYS509 contains unknown atom O1
-residue LYS509 contains unknown atom HE1
-residue LYS509 contains unknown atom HD1
-residue LYS509 contains unknown atom HG1
-residue LYS509 contains unknown atom HB1
-</pre>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [24]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">xml.dom.minidom</span>
-<span class="k">def</span> <span class="nf">_get_ncbi_info</span><span class="p">(</span><span class="n">ncbi_ac</span><span class="p">):</span>
- <span class="sd">"""Fetch dict with info from NCBI web service."""</span>
- <span class="c1"># src: https://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESummary</span>
- <span class="n">rspns</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="sa">f</span><span class="s2">"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/"</span> \
- <span class="sa">f</span><span class="s2">"esummary.fcgi?db=protein&id=</span><span class="si">{</span><span class="n">ncbi_ac</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
- <span class="n">dom</span> <span class="o">=</span> <span class="n">xml</span><span class="o">.</span><span class="n">dom</span><span class="o">.</span><span class="n">minidom</span><span class="o">.</span><span class="n">parseString</span><span class="p">(</span><span class="n">rspns</span><span class="o">.</span><span class="n">text</span><span class="p">)</span>
- <span class="n">docsums</span> <span class="o">=</span> <span class="n">dom</span><span class="o">.</span><span class="n">getElementsByTagName</span><span class="p">(</span><span class="s2">"DocSum"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">docsums</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span>
- <span class="n">docsum</span> <span class="o">=</span> <span class="n">docsums</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
- <span class="n">ncbi_dict</span> <span class="o">=</span> <span class="p">{}</span>
- <span class="k">for</span> <span class="n">cn</span> <span class="ow">in</span> <span class="n">docsum</span><span class="o">.</span><span class="n">childNodes</span><span class="p">:</span>
- <span class="k">if</span> <span class="n">cn</span><span class="o">.</span><span class="n">nodeName</span> <span class="o">==</span> <span class="s2">"Item"</span><span class="p">:</span>
- <span class="n">cn_name</span> <span class="o">=</span> <span class="n">cn</span><span class="o">.</span><span class="n">getAttribute</span><span class="p">(</span><span class="s2">"Name"</span><span class="p">)</span>
- <span class="n">cn_type</span> <span class="o">=</span> <span class="n">cn</span><span class="o">.</span><span class="n">getAttribute</span><span class="p">(</span><span class="s2">"Type"</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">cn</span><span class="o">.</span><span class="n">childNodes</span><span class="p">:</span>
- <span class="n">d</span> <span class="o">=</span> <span class="n">cn</span><span class="o">.</span><span class="n">childNodes</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">data</span>
- <span class="k">if</span> <span class="n">cn_type</span> <span class="o">==</span> <span class="s2">"String"</span><span class="p">:</span>
- <span class="n">ncbi_dict</span><span class="p">[</span><span class="n">cn_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">d</span>
- <span class="k">elif</span> <span class="n">cn_type</span> <span class="o">==</span> <span class="s2">"Integer"</span><span class="p">:</span>
- <span class="n">ncbi_dict</span><span class="p">[</span><span class="n">cn_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Unknown type </span><span class="si">{</span><span class="n">cn_type</span><span class="si">}</span><span class="s2"> for </span><span class="si">{</span><span class="n">ncbi_ac</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">ncbi_dict</span><span class="p">[</span><span class="n">cn_name</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
- <span class="k">return</span> <span class="n">ncbi_dict</span>
-</pre></div>
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- </div>
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-</div>
-</div>
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-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [25]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># fetch some extra info from NCBI</span>
-<span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">metadata</span><span class="o">.</span><span class="n">iterrows</span><span class="p">():</span>
- <span class="n">ncbi_info</span> <span class="o">=</span> <span class="n">_get_ncbi_info</span><span class="p">(</span><span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">)</span>
- <span class="c1"># Gi is some numerical sequence identifier used internally by NCBI</span>
- <span class="n">metadata</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">idx</span><span class="p">,</span> <span class="s2">"NCBI_Gi"</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"Gi"</span><span class="p">])</span>
- <span class="c1"># UpdateData is to be stored as the version date in ModelCIF</span>
- <span class="n">metadata</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">idx</span><span class="p">,</span> <span class="s2">"NCBI_UpdateDate"</span><span class="p">]</span> <span class="o">=</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"UpdateDate"</span><span class="p">]</span>
- <span class="c1"># TaxId should be same as one from UP</span>
- <span class="n">metadata</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">idx</span><span class="p">,</span> <span class="s2">"NCBI_TaxId"</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"TaxId"</span><span class="p">])</span>
- <span class="c1"># Status expected to be live</span>
- <span class="k">if</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"Status"</span><span class="p">]</span> <span class="o">!=</span> <span class="s2">"live"</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">,</span> <span class="s2">"Status"</span><span class="p">,</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"Status"</span><span class="p">])</span>
- <span class="c1"># ReplacedBy expected to be empty</span>
- <span class="k">if</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"ReplacedBy"</span><span class="p">]:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">,</span> <span class="s2">"ReplacedBy"</span><span class="p">,</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"ReplacedBy"</span><span class="p">])</span>
- <span class="c1"># AccessionVersion expected to be NCBI_Accession</span>
- <span class="k">if</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"AccessionVersion"</span><span class="p">]</span> <span class="o">!=</span> <span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">,</span> <span class="s2">"AccessionVersion"</span><span class="p">,</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"AccessionVersion"</span><span class="p">])</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
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-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [26]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">metadata</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
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-
-<div class="jp-OutputArea jp-Cell-outputArea">
-
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-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt">Out[26]:</div>
-
-
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-<div>
-<style scoped>
- .dataframe tbody tr th:only-of-type {
- vertical-align: middle;
- }
-
- .dataframe tbody tr th {
- vertical-align: top;
- }
-
- .dataframe thead th {
- text-align: right;
- }
-</style>
-<table border="1" class="dataframe">
- <thead>
- <tr style="text-align: right;">
- <th></th>
- <th>Associated PDB</th>
- <th>NCBI_Accession</th>
- <th>UniProt_ID</th>
- <th>_struct.title</th>
- <th>_struct.pdbx_model_detail</th>
- <th>ranking debugg model ID</th>
- <th>notes</th>
- <th>NCBI_Gi</th>
- <th>NCBI_UpdateDate</th>
- <th>NCBI_TaxId</th>
- </tr>
- <tr>
- <th>Protein</th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- </tr>
- </thead>
- <tbody>
- <tr>
- <th>285L</th>
- <td>285L.pdb</td>
- <td>CAD2068351.1</td>
- <td>A0A485PQD1</td>
- <td>ASFV-G 285L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_1_pred_0</td>
- <td>NaN</td>
- <td>1886136876</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>A104R</th>
- <td>A104R.pdb</td>
- <td>CAD2068395.1</td>
- <td>A0A0A1E0L7</td>
- <td>ASFV-G A104R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- <td>1886136920</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>A118R</th>
- <td>A118R.pdb</td>
- <td>CAD2068397.1</td>
- <td>A0A2X0RVA9</td>
- <td>ASFV-G A118R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_1_pred_0</td>
- <td>NaN</td>
- <td>1886136922</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>A137R</th>
- <td>A137R.pdb</td>
- <td>CAD2068404.1</td>
- <td>A0A2X0THQ0</td>
- <td>ASFV-G A137R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>NaN</td>
- <td>1886136929</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>A151R</th>
- <td>A151R.pdb</td>
- <td>CAD2068398.1</td>
- <td>A0A2X0TC55</td>
- <td>ASFV-G A151R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>NaN</td>
- <td>1886136923</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>...</th>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- </tr>
- <tr>
- <th>QP509L</th>
- <td>QP509L.pdb</td>
- <td>CAD2068484.1</td>
- <td>A0A2X0THX2</td>
- <td>ASFV-G QP509L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>NaN</td>
- <td>NaN</td>
- <td>1886137009</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>R298L</th>
- <td>R298L.pdb</td>
- <td>CAD2068482.1</td>
- <td>A0A2X0SE42</td>
- <td>ASFV-G R298L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>NaN</td>
- <td>1886137007</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>S183L</th>
- <td>S183L.pdb</td>
- <td>CAD2068472.1</td>
- <td>A0A2X0SE34</td>
- <td>ASFV-G S183L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>NaN</td>
- <td>1886136997</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>S273R</th>
- <td>S273R.pdb</td>
- <td>CAD2068473.1</td>
- <td>A0A2X0TKM5</td>
- <td>ASFV-G S273R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- <td>1886136998</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>X69R</th>
- <td>X69R.pdb</td>
- <td>CAD2068372.1</td>
- <td>A0A2X0TKC7</td>
- <td>ASFV-G X69R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- <td>1886136897</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- </tbody>
-</table>
-<p>197 rows × 10 columns</p>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [27]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">)),</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">NCBI_TaxId</span><span class="p">),</span> \
-<span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">NCBI_Gi</span><span class="p">)),</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">NCBI_UpdateDate</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
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-
-<div class="jp-OutputArea-child">
-
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- <div class="jp-OutputPrompt jp-OutputArea-prompt">Out[27]:</div>
-
-
-
-
-<div class="jp-RenderedText jp-OutputArea-output jp-OutputArea-executeResult" data-mime-type="text/plain">
-<pre>(193, {'10497'}, 193, {'2020/08/05'})</pre>
-</div>
-
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [28]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">up_data</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
-
-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt">Out[28]:</div>
-
-
-
-
-<div class="jp-RenderedText jp-OutputArea-output jp-OutputArea-executeResult" data-mime-type="text/plain">
-<pre>{'up_organism': 'African swine fever virus (ASFV)',
- 'up_sequence': 'MMNIIKIRGKIFFAVLLEEDISLNTLSPNAVIRKI',
- 'up_ac': 'A0A485PZB7',
- 'up_id': 'A0A485PZB7_ASF',
- 'up_last_mod': datetime.datetime(2019, 6, 5, 0, 0),
- 'up_gn': 'hypthetical',
- 'up_ncbi_taxid': '10497',
- 'up_seqlen': 35,
- 'up_crc64': '5CA27C9509292409',
- 'up_isoform': None}</pre>
-</div>
-
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-
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-</body>
-
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diff --git a/projects/USDA-ASFVG/tests/test.html b/projects/USDA-ASFVG/tests/test.html
deleted file mode 100644
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- background-image:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-button.bp3-intent-warning:disabled, .bp3-button.bp3-intent-warning.bp3-disabled{
- background-color:rgba(217, 130, 43, 0.5);
- background-image:none;
- border-color:transparent;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(255, 255, 255, 0.6); }
- .bp3-button.bp3-intent-danger{
- background-color:#db3737;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.1)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.1), rgba(255, 255, 255, 0));
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- color:#ffffff; }
- .bp3-button.bp3-intent-danger:hover, .bp3-button.bp3-intent-danger:active, .bp3-button.bp3-intent-danger.bp3-active{
- color:#ffffff; }
- .bp3-button.bp3-intent-danger:hover{
- background-color:#c23030;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2); }
- .bp3-button.bp3-intent-danger:active, .bp3-button.bp3-intent-danger.bp3-active{
- background-color:#a82a2a;
- background-image:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-button.bp3-intent-danger:disabled, .bp3-button.bp3-intent-danger.bp3-disabled{
- background-color:rgba(219, 55, 55, 0.5);
- background-image:none;
- border-color:transparent;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(255, 255, 255, 0.6); }
- .bp3-button[class*="bp3-intent-"] .bp3-button-spinner .bp3-spinner-head{
- stroke:#ffffff; }
- .bp3-button.bp3-large,
- .bp3-large .bp3-button{
- min-height:40px;
- min-width:40px;
- font-size:16px;
- padding:5px 15px; }
- .bp3-button.bp3-large::before,
- .bp3-button.bp3-large > *,
- .bp3-large .bp3-button::before,
- .bp3-large .bp3-button > *{
- margin-right:10px; }
- .bp3-button.bp3-large:empty::before,
- .bp3-button.bp3-large > :last-child,
- .bp3-large .bp3-button:empty::before,
- .bp3-large .bp3-button > :last-child{
- margin-right:0; }
- .bp3-button.bp3-small,
- .bp3-small .bp3-button{
- min-height:24px;
- min-width:24px;
- padding:0 7px; }
- .bp3-button.bp3-loading{
- position:relative; }
- .bp3-button.bp3-loading[class*="bp3-icon-"]::before{
- visibility:hidden; }
- .bp3-button.bp3-loading .bp3-button-spinner{
- margin:0;
- position:absolute; }
- .bp3-button.bp3-loading > :not(.bp3-button-spinner){
- visibility:hidden; }
- .bp3-button[class*="bp3-icon-"]::before{
- font-family:"Icons16", sans-serif;
- font-size:16px;
- font-style:normal;
- font-weight:400;
- line-height:1;
- -moz-osx-font-smoothing:grayscale;
- -webkit-font-smoothing:antialiased;
- color:#5c7080; }
- .bp3-button .bp3-icon, .bp3-button .bp3-icon-standard, .bp3-button .bp3-icon-large{
- color:#5c7080; }
- .bp3-button .bp3-icon.bp3-align-right, .bp3-button .bp3-icon-standard.bp3-align-right, .bp3-button .bp3-icon-large.bp3-align-right{
- margin-left:7px; }
- .bp3-button .bp3-icon:first-child:last-child,
- .bp3-button .bp3-spinner + .bp3-icon:last-child{
- margin:0 -7px; }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"]){
- background-color:#394b59;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.05)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.05), rgba(255, 255, 255, 0));
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa; }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"]):hover, .bp3-dark .bp3-button:not([class*="bp3-intent-"]):active, .bp3-dark .bp3-button:not([class*="bp3-intent-"]).bp3-active{
- color:#f5f8fa; }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"]):hover{
- background-color:#30404d;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"]):active, .bp3-dark .bp3-button:not([class*="bp3-intent-"]).bp3-active{
- background-color:#202b33;
- background-image:none;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"]):disabled, .bp3-dark .bp3-button:not([class*="bp3-intent-"]).bp3-disabled{
- background-color:rgba(57, 75, 89, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"]):disabled.bp3-active, .bp3-dark .bp3-button:not([class*="bp3-intent-"]).bp3-disabled.bp3-active{
- background:rgba(57, 75, 89, 0.7); }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"]) .bp3-button-spinner .bp3-spinner-head{
- background:rgba(16, 22, 26, 0.5);
- stroke:#8a9ba8; }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"])[class*="bp3-icon-"]::before{
- color:#a7b6c2; }
- .bp3-dark .bp3-button:not([class*="bp3-intent-"]) .bp3-icon, .bp3-dark .bp3-button:not([class*="bp3-intent-"]) .bp3-icon-standard, .bp3-dark .bp3-button:not([class*="bp3-intent-"]) .bp3-icon-large{
- color:#a7b6c2; }
- .bp3-dark .bp3-button[class*="bp3-intent-"]{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-button[class*="bp3-intent-"]:hover{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-button[class*="bp3-intent-"]:active, .bp3-dark .bp3-button[class*="bp3-intent-"].bp3-active{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-button[class*="bp3-intent-"]:disabled, .bp3-dark .bp3-button[class*="bp3-intent-"].bp3-disabled{
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(255, 255, 255, 0.3); }
- .bp3-dark .bp3-button[class*="bp3-intent-"] .bp3-button-spinner .bp3-spinner-head{
- stroke:#8a9ba8; }
- .bp3-button:disabled::before,
- .bp3-button:disabled .bp3-icon, .bp3-button:disabled .bp3-icon-standard, .bp3-button:disabled .bp3-icon-large, .bp3-button.bp3-disabled::before,
- .bp3-button.bp3-disabled .bp3-icon, .bp3-button.bp3-disabled .bp3-icon-standard, .bp3-button.bp3-disabled .bp3-icon-large, .bp3-button[class*="bp3-intent-"]::before,
- .bp3-button[class*="bp3-intent-"] .bp3-icon, .bp3-button[class*="bp3-intent-"] .bp3-icon-standard, .bp3-button[class*="bp3-intent-"] .bp3-icon-large{
- color:inherit !important; }
- .bp3-button.bp3-minimal{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-button.bp3-minimal:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-button.bp3-minimal:active, .bp3-button.bp3-minimal.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-button.bp3-minimal:disabled, .bp3-button.bp3-minimal:disabled:hover, .bp3-button.bp3-minimal.bp3-disabled, .bp3-button.bp3-minimal.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-button.bp3-minimal:disabled.bp3-active, .bp3-button.bp3-minimal:disabled:hover.bp3-active, .bp3-button.bp3-minimal.bp3-disabled.bp3-active, .bp3-button.bp3-minimal.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-button.bp3-minimal{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-button.bp3-minimal:hover, .bp3-dark .bp3-button.bp3-minimal:active, .bp3-dark .bp3-button.bp3-minimal.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-button.bp3-minimal:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-button.bp3-minimal:active, .bp3-dark .bp3-button.bp3-minimal.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-button.bp3-minimal:disabled, .bp3-dark .bp3-button.bp3-minimal:disabled:hover, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-button.bp3-minimal:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal:disabled:hover.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-primary{
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:hover, .bp3-button.bp3-minimal.bp3-intent-primary:active, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:active, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-button.bp3-minimal.bp3-intent-primary:disabled, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-primary:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-success{
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:hover, .bp3-button.bp3-minimal.bp3-intent-success:active, .bp3-button.bp3-minimal.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:active, .bp3-button.bp3-minimal.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-button.bp3-minimal.bp3-intent-success:disabled, .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-success:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-success .bp3-button-spinner .bp3-spinner-head{
- stroke:#0d8050; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success{
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.2);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(61, 204, 145, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-warning{
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:hover, .bp3-button.bp3-minimal.bp3-intent-warning:active, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:active, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#bf7326; }
- .bp3-button.bp3-minimal.bp3-intent-warning:disabled, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(191, 115, 38, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-warning:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head{
- stroke:#bf7326; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning{
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.2);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(255, 179, 102, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-danger{
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:hover, .bp3-button.bp3-minimal.bp3-intent-danger:active, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.15);
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:active, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#c23030; }
- .bp3-button.bp3-minimal.bp3-intent-danger:disabled, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(194, 48, 48, 0.5); }
- .bp3-button.bp3-minimal.bp3-intent-danger:disabled.bp3-active, .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-minimal.bp3-intent-danger .bp3-button-spinner .bp3-spinner-head{
- stroke:#c23030; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger{
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.2);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:disabled, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(255, 115, 115, 0.5); }
- .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger:disabled.bp3-active, .bp3-dark .bp3-button.bp3-minimal.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-outlined{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- border:1px solid rgba(24, 32, 38, 0.2);
- -webkit-box-sizing:border-box;
- box-sizing:border-box; }
- .bp3-button.bp3-outlined:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-button.bp3-outlined:active, .bp3-button.bp3-outlined.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-button.bp3-outlined:disabled, .bp3-button.bp3-outlined:disabled:hover, .bp3-button.bp3-outlined.bp3-disabled, .bp3-button.bp3-outlined.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-button.bp3-outlined:disabled.bp3-active, .bp3-button.bp3-outlined:disabled:hover.bp3-active, .bp3-button.bp3-outlined.bp3-disabled.bp3-active, .bp3-button.bp3-outlined.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-button.bp3-outlined{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-button.bp3-outlined:hover, .bp3-dark .bp3-button.bp3-outlined:active, .bp3-dark .bp3-button.bp3-outlined.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-button.bp3-outlined:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-button.bp3-outlined:active, .bp3-dark .bp3-button.bp3-outlined.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-button.bp3-outlined:disabled, .bp3-dark .bp3-button.bp3-outlined:disabled:hover, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-button.bp3-outlined:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined:disabled:hover.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-primary{
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:hover, .bp3-button.bp3-outlined.bp3-intent-primary:active, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:active, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-primary:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-success{
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:hover, .bp3-button.bp3-outlined.bp3-intent-success:active, .bp3-button.bp3-outlined.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:active, .bp3-button.bp3-outlined.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-success:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-success .bp3-button-spinner .bp3-spinner-head{
- stroke:#0d8050; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success{
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.2);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#3dcc91; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(61, 204, 145, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-warning{
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:hover, .bp3-button.bp3-outlined.bp3-intent-warning:active, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.15);
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:active, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#bf7326; }
- .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(191, 115, 38, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-warning:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-warning .bp3-button-spinner .bp3-spinner-head{
- stroke:#bf7326; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning{
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:hover{
- background:rgba(217, 130, 43, 0.2);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-active{
- background:rgba(217, 130, 43, 0.3);
- color:#ffb366; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- background:none;
- color:rgba(255, 179, 102, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled.bp3-active{
- background:rgba(217, 130, 43, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-danger{
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:hover, .bp3-button.bp3-outlined.bp3-intent-danger:active, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.15);
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:active, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#c23030; }
- .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(194, 48, 48, 0.5); }
- .bp3-button.bp3-outlined.bp3-intent-danger:disabled.bp3-active, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-outlined.bp3-intent-danger .bp3-button-spinner .bp3-spinner-head{
- stroke:#c23030; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger{
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:hover{
- background:rgba(219, 55, 55, 0.2);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-active{
- background:rgba(219, 55, 55, 0.3);
- color:#ff7373; }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- background:none;
- color:rgba(255, 115, 115, 0.5); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:disabled.bp3-active, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled.bp3-active{
- background:rgba(219, 55, 55, 0.3); }
- .bp3-button.bp3-outlined:disabled, .bp3-button.bp3-outlined.bp3-disabled, .bp3-button.bp3-outlined:disabled:hover, .bp3-button.bp3-outlined.bp3-disabled:hover{
- border-color:rgba(92, 112, 128, 0.1); }
- .bp3-dark .bp3-button.bp3-outlined{
- border-color:rgba(255, 255, 255, 0.4); }
- .bp3-dark .bp3-button.bp3-outlined:disabled, .bp3-dark .bp3-button.bp3-outlined:disabled:hover, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-disabled:hover{
- border-color:rgba(255, 255, 255, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-primary{
- border-color:rgba(16, 107, 163, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- border-color:rgba(16, 107, 163, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary{
- border-color:rgba(72, 175, 240, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-primary.bp3-disabled{
- border-color:rgba(72, 175, 240, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-success{
- border-color:rgba(13, 128, 80, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- border-color:rgba(13, 128, 80, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success{
- border-color:rgba(61, 204, 145, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-success.bp3-disabled{
- border-color:rgba(61, 204, 145, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-warning{
- border-color:rgba(191, 115, 38, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- border-color:rgba(191, 115, 38, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning{
- border-color:rgba(255, 179, 102, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-warning.bp3-disabled{
- border-color:rgba(255, 179, 102, 0.2); }
- .bp3-button.bp3-outlined.bp3-intent-danger{
- border-color:rgba(194, 48, 48, 0.6); }
- .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- border-color:rgba(194, 48, 48, 0.2); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger{
- border-color:rgba(255, 115, 115, 0.6); }
- .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger:disabled, .bp3-dark .bp3-button.bp3-outlined.bp3-intent-danger.bp3-disabled{
- border-color:rgba(255, 115, 115, 0.2); }
-
-a.bp3-button{
- text-align:center;
- text-decoration:none;
- -webkit-transition:none;
- transition:none; }
- a.bp3-button, a.bp3-button:hover, a.bp3-button:active{
- color:#182026; }
- a.bp3-button.bp3-disabled{
- color:rgba(92, 112, 128, 0.6); }
-
-.bp3-button-text{
- -webkit-box-flex:0;
- -ms-flex:0 1 auto;
- flex:0 1 auto; }
-
-.bp3-button.bp3-align-left .bp3-button-text, .bp3-button.bp3-align-right .bp3-button-text,
-.bp3-button-group.bp3-align-left .bp3-button-text,
-.bp3-button-group.bp3-align-right .bp3-button-text{
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto; }
-.bp3-button-group{
- display:-webkit-inline-box;
- display:-ms-inline-flexbox;
- display:inline-flex; }
- .bp3-button-group .bp3-button{
- -webkit-box-flex:0;
- -ms-flex:0 0 auto;
- flex:0 0 auto;
- position:relative;
- z-index:4; }
- .bp3-button-group .bp3-button:focus{
- z-index:5; }
- .bp3-button-group .bp3-button:hover{
- z-index:6; }
- .bp3-button-group .bp3-button:active, .bp3-button-group .bp3-button.bp3-active{
- z-index:7; }
- .bp3-button-group .bp3-button:disabled, .bp3-button-group .bp3-button.bp3-disabled{
- z-index:3; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]{
- z-index:9; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:focus{
- z-index:10; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:hover{
- z-index:11; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:active, .bp3-button-group .bp3-button[class*="bp3-intent-"].bp3-active{
- z-index:12; }
- .bp3-button-group .bp3-button[class*="bp3-intent-"]:disabled, .bp3-button-group .bp3-button[class*="bp3-intent-"].bp3-disabled{
- z-index:8; }
- .bp3-button-group:not(.bp3-minimal) > .bp3-popover-wrapper:not(:first-child) .bp3-button,
- .bp3-button-group:not(.bp3-minimal) > .bp3-button:not(:first-child){
- border-bottom-left-radius:0;
- border-top-left-radius:0; }
- .bp3-button-group:not(.bp3-minimal) > .bp3-popover-wrapper:not(:last-child) .bp3-button,
- .bp3-button-group:not(.bp3-minimal) > .bp3-button:not(:last-child){
- border-bottom-right-radius:0;
- border-top-right-radius:0;
- margin-right:-1px; }
- .bp3-button-group.bp3-minimal .bp3-button{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-button-group.bp3-minimal .bp3-button:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-button-group.bp3-minimal .bp3-button:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-button-group.bp3-minimal .bp3-button:disabled, .bp3-button-group.bp3-minimal .bp3-button:disabled:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-button-group.bp3-minimal .bp3-button:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button:disabled:hover.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:hover, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled:hover, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button:disabled:hover.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary{
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success{
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:hover, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:disabled, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success:disabled.bp3-active, .bp3-button-group.bp3-minimal .bp3-button.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
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-.bp3-editable-text-input,
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-.bp3-editable-text-input{
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- margin-right:-1px; }
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- margin-left:6px; }
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- .bp3-dark .bp3-control-group:not(.bp3-vertical) > .bp3-button + .bp3-button{
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- margin-right:0; }
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- border-top-left-radius:0; }
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- -ms-flex:1 1 auto;
- flex:1 1 auto; }
- .bp3-control-group.bp3-fill > *:not(.bp3-fixed){
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto; }
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- -ms-flex-direction:column;
- flex-direction:column; }
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- border-radius:3px 3px 0 0;
- margin-top:0; }
- .bp3-control-group.bp3-vertical > :last-child{
- border-radius:0 0 3px 3px; }
-.bp3-control{
- cursor:pointer;
- display:block;
- margin-bottom:10px;
- position:relative;
- text-transform:none; }
- .bp3-control input:checked ~ .bp3-control-indicator{
- background-color:#137cbd;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.1)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.1), rgba(255, 255, 255, 0));
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- color:#ffffff; }
- .bp3-control:hover input:checked ~ .bp3-control-indicator{
- background-color:#106ba3;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2); }
- .bp3-control input:not(:disabled):active:checked ~ .bp3-control-indicator{
- background:#0e5a8a;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-control input:disabled:checked ~ .bp3-control-indicator{
- background:rgba(19, 124, 189, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-control input:checked ~ .bp3-control-indicator{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control:hover input:checked ~ .bp3-control-indicator{
- background-color:#106ba3;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control input:not(:disabled):active:checked ~ .bp3-control-indicator{
- background-color:#0e5a8a;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-control input:disabled:checked ~ .bp3-control-indicator{
- background:rgba(14, 90, 138, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-control:not(.bp3-align-right){
- padding-left:26px; }
- .bp3-control:not(.bp3-align-right) .bp3-control-indicator{
- margin-left:-26px; }
- .bp3-control.bp3-align-right{
- padding-right:26px; }
- .bp3-control.bp3-align-right .bp3-control-indicator{
- margin-right:-26px; }
- .bp3-control.bp3-disabled{
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-control.bp3-inline{
- display:inline-block;
- margin-right:20px; }
- .bp3-control input{
- left:0;
- opacity:0;
- position:absolute;
- top:0;
- z-index:-1; }
- .bp3-control .bp3-control-indicator{
- background-clip:padding-box;
- background-color:#f5f8fa;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.8)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.8), rgba(255, 255, 255, 0));
- border:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- cursor:pointer;
- display:inline-block;
- font-size:16px;
- height:1em;
- margin-right:10px;
- margin-top:-3px;
- position:relative;
- -webkit-user-select:none;
- -moz-user-select:none;
- -ms-user-select:none;
- user-select:none;
- vertical-align:middle;
- width:1em; }
- .bp3-control .bp3-control-indicator::before{
- content:"";
- display:block;
- height:1em;
- width:1em; }
- .bp3-control:hover .bp3-control-indicator{
- background-color:#ebf1f5; }
- .bp3-control input:not(:disabled):active ~ .bp3-control-indicator{
- background:#d8e1e8;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-control input:disabled ~ .bp3-control-indicator{
- background:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- cursor:not-allowed; }
- .bp3-control input:focus ~ .bp3-control-indicator{
- outline:rgba(19, 124, 189, 0.6) auto 2px;
- outline-offset:2px;
- -moz-outline-radius:6px; }
- .bp3-control.bp3-align-right .bp3-control-indicator{
- float:right;
- margin-left:10px;
- margin-top:1px; }
- .bp3-control.bp3-large{
- font-size:16px; }
- .bp3-control.bp3-large:not(.bp3-align-right){
- padding-left:30px; }
- .bp3-control.bp3-large:not(.bp3-align-right) .bp3-control-indicator{
- margin-left:-30px; }
- .bp3-control.bp3-large.bp3-align-right{
- padding-right:30px; }
- .bp3-control.bp3-large.bp3-align-right .bp3-control-indicator{
- margin-right:-30px; }
- .bp3-control.bp3-large .bp3-control-indicator{
- font-size:20px; }
- .bp3-control.bp3-large.bp3-align-right .bp3-control-indicator{
- margin-top:0; }
- .bp3-control.bp3-checkbox input:indeterminate ~ .bp3-control-indicator{
- background-color:#137cbd;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.1)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.1), rgba(255, 255, 255, 0));
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- color:#ffffff; }
- .bp3-control.bp3-checkbox:hover input:indeterminate ~ .bp3-control-indicator{
- background-color:#106ba3;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 -1px 0 rgba(16, 22, 26, 0.2); }
- .bp3-control.bp3-checkbox input:not(:disabled):active:indeterminate ~ .bp3-control-indicator{
- background:#0e5a8a;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-control.bp3-checkbox input:disabled:indeterminate ~ .bp3-control-indicator{
- background:rgba(19, 124, 189, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-control.bp3-checkbox input:indeterminate ~ .bp3-control-indicator{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-checkbox:hover input:indeterminate ~ .bp3-control-indicator{
- background-color:#106ba3;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-checkbox input:not(:disabled):active:indeterminate ~ .bp3-control-indicator{
- background-color:#0e5a8a;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-control.bp3-checkbox input:disabled:indeterminate ~ .bp3-control-indicator{
- background:rgba(14, 90, 138, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-control.bp3-checkbox .bp3-control-indicator{
- border-radius:3px; }
- .bp3-control.bp3-checkbox input:checked ~ .bp3-control-indicator::before{
- background-image:url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16'%3e%3cpath fill-rule='evenodd' clip-rule='evenodd' d='M12 5c-.28 0-.53.11-.71.29L7 9.59l-2.29-2.3a1.003 1.003 0 00-1.42 1.42l3 3c.18.18.43.29.71.29s.53-.11.71-.29l5-5A1.003 1.003 0 0012 5z' fill='white'/%3e%3c/svg%3e"); }
- .bp3-control.bp3-checkbox input:indeterminate ~ .bp3-control-indicator::before{
- background-image:url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16'%3e%3cpath fill-rule='evenodd' clip-rule='evenodd' d='M11 7H5c-.55 0-1 .45-1 1s.45 1 1 1h6c.55 0 1-.45 1-1s-.45-1-1-1z' fill='white'/%3e%3c/svg%3e"); }
- .bp3-control.bp3-radio .bp3-control-indicator{
- border-radius:50%; }
- .bp3-control.bp3-radio input:checked ~ .bp3-control-indicator::before{
- background-image:radial-gradient(#ffffff, #ffffff 28%, transparent 32%); }
- .bp3-control.bp3-radio input:checked:disabled ~ .bp3-control-indicator::before{
- opacity:0.5; }
- .bp3-control.bp3-radio input:focus ~ .bp3-control-indicator{
- -moz-outline-radius:16px; }
- .bp3-control.bp3-switch input ~ .bp3-control-indicator{
- background:rgba(167, 182, 194, 0.5); }
- .bp3-control.bp3-switch:hover input ~ .bp3-control-indicator{
- background:rgba(115, 134, 148, 0.5); }
- .bp3-control.bp3-switch input:not(:disabled):active ~ .bp3-control-indicator{
- background:rgba(92, 112, 128, 0.5); }
- .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator{
- background:rgba(206, 217, 224, 0.5); }
- .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator::before{
- background:rgba(255, 255, 255, 0.8); }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator{
- background:#137cbd; }
- .bp3-control.bp3-switch:hover input:checked ~ .bp3-control-indicator{
- background:#106ba3; }
- .bp3-control.bp3-switch input:checked:not(:disabled):active ~ .bp3-control-indicator{
- background:#0e5a8a; }
- .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator{
- background:rgba(19, 124, 189, 0.5); }
- .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator::before{
- background:rgba(255, 255, 255, 0.8); }
- .bp3-control.bp3-switch:not(.bp3-align-right){
- padding-left:38px; }
- .bp3-control.bp3-switch:not(.bp3-align-right) .bp3-control-indicator{
- margin-left:-38px; }
- .bp3-control.bp3-switch.bp3-align-right{
- padding-right:38px; }
- .bp3-control.bp3-switch.bp3-align-right .bp3-control-indicator{
- margin-right:-38px; }
- .bp3-control.bp3-switch .bp3-control-indicator{
- border:none;
- border-radius:1.75em;
- -webkit-box-shadow:none !important;
- box-shadow:none !important;
- min-width:1.75em;
- -webkit-transition:background-color 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:background-color 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- width:auto; }
- .bp3-control.bp3-switch .bp3-control-indicator::before{
- background:#ffffff;
- border-radius:50%;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 1px 1px rgba(16, 22, 26, 0.2);
- height:calc(1em - 4px);
- left:0;
- margin:2px;
- position:absolute;
- -webkit-transition:left 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:left 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- width:calc(1em - 4px); }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator::before{
- left:calc(100% - 1em); }
- .bp3-control.bp3-switch.bp3-large:not(.bp3-align-right){
- padding-left:45px; }
- .bp3-control.bp3-switch.bp3-large:not(.bp3-align-right) .bp3-control-indicator{
- margin-left:-45px; }
- .bp3-control.bp3-switch.bp3-large.bp3-align-right{
- padding-right:45px; }
- .bp3-control.bp3-switch.bp3-large.bp3-align-right .bp3-control-indicator{
- margin-right:-45px; }
- .bp3-dark .bp3-control.bp3-switch input ~ .bp3-control-indicator{
- background:rgba(16, 22, 26, 0.5); }
- .bp3-dark .bp3-control.bp3-switch:hover input ~ .bp3-control-indicator{
- background:rgba(16, 22, 26, 0.7); }
- .bp3-dark .bp3-control.bp3-switch input:not(:disabled):active ~ .bp3-control-indicator{
- background:rgba(16, 22, 26, 0.9); }
- .bp3-dark .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator{
- background:rgba(57, 75, 89, 0.5); }
- .bp3-dark .bp3-control.bp3-switch input:disabled ~ .bp3-control-indicator::before{
- background:rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator{
- background:#137cbd; }
- .bp3-dark .bp3-control.bp3-switch:hover input:checked ~ .bp3-control-indicator{
- background:#106ba3; }
- .bp3-dark .bp3-control.bp3-switch input:checked:not(:disabled):active ~ .bp3-control-indicator{
- background:#0e5a8a; }
- .bp3-dark .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator{
- background:rgba(14, 90, 138, 0.5); }
- .bp3-dark .bp3-control.bp3-switch input:checked:disabled ~ .bp3-control-indicator::before{
- background:rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-switch .bp3-control-indicator::before{
- background:#394b59;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator::before{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-control.bp3-switch .bp3-switch-inner-text{
- font-size:0.7em;
- text-align:center; }
- .bp3-control.bp3-switch .bp3-control-indicator-child:first-child{
- line-height:0;
- margin-left:0.5em;
- margin-right:1.2em;
- visibility:hidden; }
- .bp3-control.bp3-switch .bp3-control-indicator-child:last-child{
- line-height:1em;
- margin-left:1.2em;
- margin-right:0.5em;
- visibility:visible; }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator .bp3-control-indicator-child:first-child{
- line-height:1em;
- visibility:visible; }
- .bp3-control.bp3-switch input:checked ~ .bp3-control-indicator .bp3-control-indicator-child:last-child{
- line-height:0;
- visibility:hidden; }
- .bp3-dark .bp3-control{
- color:#f5f8fa; }
- .bp3-dark .bp3-control.bp3-disabled{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-control .bp3-control-indicator{
- background-color:#394b59;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.05)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.05), rgba(255, 255, 255, 0));
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-control:hover .bp3-control-indicator{
- background-color:#30404d; }
- .bp3-dark .bp3-control input:not(:disabled):active ~ .bp3-control-indicator{
- background:#202b33;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-control input:disabled ~ .bp3-control-indicator{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- cursor:not-allowed; }
- .bp3-dark .bp3-control.bp3-checkbox input:disabled:checked ~ .bp3-control-indicator, .bp3-dark .bp3-control.bp3-checkbox input:disabled:indeterminate ~ .bp3-control-indicator{
- color:rgba(167, 182, 194, 0.6); }
-.bp3-file-input{
- cursor:pointer;
- display:inline-block;
- height:30px;
- position:relative; }
- .bp3-file-input input{
- margin:0;
- min-width:200px;
- opacity:0; }
- .bp3-file-input input:disabled + .bp3-file-upload-input,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input{
- background:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- resize:none; }
- .bp3-file-input input:disabled + .bp3-file-upload-input::after,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after{
- background-color:rgba(206, 217, 224, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- outline:none; }
- .bp3-file-input input:disabled + .bp3-file-upload-input::after.bp3-active, .bp3-file-input input:disabled + .bp3-file-upload-input::after.bp3-active:hover,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after.bp3-active,
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after.bp3-active:hover{
- background:rgba(206, 217, 224, 0.7); }
- .bp3-dark .bp3-file-input input:disabled + .bp3-file-upload-input, .bp3-dark
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-input input:disabled + .bp3-file-upload-input::after, .bp3-dark
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after{
- background-color:rgba(57, 75, 89, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-input input:disabled + .bp3-file-upload-input::after.bp3-active, .bp3-dark
- .bp3-file-input input.bp3-disabled + .bp3-file-upload-input::after.bp3-active{
- background:rgba(57, 75, 89, 0.7); }
- .bp3-file-input.bp3-file-input-has-selection .bp3-file-upload-input{
- color:#182026; }
- .bp3-dark .bp3-file-input.bp3-file-input-has-selection .bp3-file-upload-input{
- color:#f5f8fa; }
- .bp3-file-input.bp3-fill{
- width:100%; }
- .bp3-file-input.bp3-large,
- .bp3-large .bp3-file-input{
- height:40px; }
- .bp3-file-input .bp3-file-upload-input-custom-text::after{
- content:attr(bp3-button-text); }
-
-.bp3-file-upload-input{
- -webkit-appearance:none;
- -moz-appearance:none;
- appearance:none;
- background:#ffffff;
- border:none;
- border-radius:3px;
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- color:#182026;
- font-size:14px;
- font-weight:400;
- height:30px;
- line-height:30px;
- outline:none;
- padding:0 10px;
- -webkit-transition:-webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:-webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9), -webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- vertical-align:middle;
- overflow:hidden;
- text-overflow:ellipsis;
- white-space:nowrap;
- word-wrap:normal;
- color:rgba(92, 112, 128, 0.6);
- left:0;
- padding-right:80px;
- position:absolute;
- right:0;
- top:0;
- -webkit-user-select:none;
- -moz-user-select:none;
- -ms-user-select:none;
- user-select:none; }
- .bp3-file-upload-input::-webkit-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input::-moz-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input:-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input::-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input::placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-file-upload-input:focus, .bp3-file-upload-input.bp3-active{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-file-upload-input[type="search"], .bp3-file-upload-input.bp3-round{
- border-radius:30px;
- -webkit-box-sizing:border-box;
- box-sizing:border-box;
- padding-left:10px; }
- .bp3-file-upload-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.15);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.15); }
- .bp3-file-upload-input:disabled, .bp3-file-upload-input.bp3-disabled{
- background:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- resize:none; }
- .bp3-file-upload-input::after{
- background-color:#f5f8fa;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.8)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.8), rgba(255, 255, 255, 0));
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- color:#182026;
- min-height:24px;
- min-width:24px;
- overflow:hidden;
- text-overflow:ellipsis;
- white-space:nowrap;
- word-wrap:normal;
- border-radius:3px;
- content:"Browse";
- line-height:24px;
- margin:3px;
- position:absolute;
- right:0;
- text-align:center;
- top:0;
- width:70px; }
- .bp3-file-upload-input::after:hover{
- background-clip:padding-box;
- background-color:#ebf1f5;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
- .bp3-file-upload-input::after:active, .bp3-file-upload-input::after.bp3-active{
- background-color:#d8e1e8;
- background-image:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-file-upload-input::after:disabled, .bp3-file-upload-input::after.bp3-disabled{
- background-color:rgba(206, 217, 224, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- outline:none; }
- .bp3-file-upload-input::after:disabled.bp3-active, .bp3-file-upload-input::after:disabled.bp3-active:hover, .bp3-file-upload-input::after.bp3-disabled.bp3-active, .bp3-file-upload-input::after.bp3-disabled.bp3-active:hover{
- background:rgba(206, 217, 224, 0.7); }
- .bp3-file-upload-input:hover::after{
- background-clip:padding-box;
- background-color:#ebf1f5;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
- .bp3-file-upload-input:active::after{
- background-color:#d8e1e8;
- background-image:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-large .bp3-file-upload-input{
- font-size:16px;
- height:40px;
- line-height:40px;
- padding-right:95px; }
- .bp3-large .bp3-file-upload-input[type="search"], .bp3-large .bp3-file-upload-input.bp3-round{
- padding:0 15px; }
- .bp3-large .bp3-file-upload-input::after{
- min-height:30px;
- min-width:30px;
- line-height:30px;
- margin:5px;
- width:85px; }
- .bp3-dark .bp3-file-upload-input{
- background:rgba(16, 22, 26, 0.3);
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::-webkit-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::-moz-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input:-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-file-upload-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-file-upload-input:disabled, .bp3-dark .bp3-file-upload-input.bp3-disabled{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::after{
- background-color:#394b59;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.05)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.05), rgba(255, 255, 255, 0));
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa; }
- .bp3-dark .bp3-file-upload-input::after:hover, .bp3-dark .bp3-file-upload-input::after:active, .bp3-dark .bp3-file-upload-input::after.bp3-active{
- color:#f5f8fa; }
- .bp3-dark .bp3-file-upload-input::after:hover{
- background-color:#30404d;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-file-upload-input::after:active, .bp3-dark .bp3-file-upload-input::after.bp3-active{
- background-color:#202b33;
- background-image:none;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-file-upload-input::after:disabled, .bp3-dark .bp3-file-upload-input::after.bp3-disabled{
- background-color:rgba(57, 75, 89, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-file-upload-input::after:disabled.bp3-active, .bp3-dark .bp3-file-upload-input::after.bp3-disabled.bp3-active{
- background:rgba(57, 75, 89, 0.7); }
- .bp3-dark .bp3-file-upload-input::after .bp3-button-spinner .bp3-spinner-head{
- background:rgba(16, 22, 26, 0.5);
- stroke:#8a9ba8; }
- .bp3-dark .bp3-file-upload-input:hover::after{
- background-color:#30404d;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-file-upload-input:active::after{
- background-color:#202b33;
- background-image:none;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
-.bp3-file-upload-input::after{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
-.bp3-form-group{
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- -webkit-box-orient:vertical;
- -webkit-box-direction:normal;
- -ms-flex-direction:column;
- flex-direction:column;
- margin:0 0 15px; }
- .bp3-form-group label.bp3-label{
- margin-bottom:5px; }
- .bp3-form-group .bp3-control{
- margin-top:7px; }
- .bp3-form-group .bp3-form-helper-text{
- color:#5c7080;
- font-size:12px;
- margin-top:5px; }
- .bp3-form-group.bp3-intent-primary .bp3-form-helper-text{
- color:#106ba3; }
- .bp3-form-group.bp3-intent-success .bp3-form-helper-text{
- color:#0d8050; }
- .bp3-form-group.bp3-intent-warning .bp3-form-helper-text{
- color:#bf7326; }
- .bp3-form-group.bp3-intent-danger .bp3-form-helper-text{
- color:#c23030; }
- .bp3-form-group.bp3-inline{
- -webkit-box-align:start;
- -ms-flex-align:start;
- align-items:flex-start;
- -webkit-box-orient:horizontal;
- -webkit-box-direction:normal;
- -ms-flex-direction:row;
- flex-direction:row; }
- .bp3-form-group.bp3-inline.bp3-large label.bp3-label{
- line-height:40px;
- margin:0 10px 0 0; }
- .bp3-form-group.bp3-inline label.bp3-label{
- line-height:30px;
- margin:0 10px 0 0; }
- .bp3-form-group.bp3-disabled .bp3-label,
- .bp3-form-group.bp3-disabled .bp3-text-muted,
- .bp3-form-group.bp3-disabled .bp3-form-helper-text{
- color:rgba(92, 112, 128, 0.6) !important; }
- .bp3-dark .bp3-form-group.bp3-intent-primary .bp3-form-helper-text{
- color:#48aff0; }
- .bp3-dark .bp3-form-group.bp3-intent-success .bp3-form-helper-text{
- color:#3dcc91; }
- .bp3-dark .bp3-form-group.bp3-intent-warning .bp3-form-helper-text{
- color:#ffb366; }
- .bp3-dark .bp3-form-group.bp3-intent-danger .bp3-form-helper-text{
- color:#ff7373; }
- .bp3-dark .bp3-form-group .bp3-form-helper-text{
- color:#a7b6c2; }
- .bp3-dark .bp3-form-group.bp3-disabled .bp3-label,
- .bp3-dark .bp3-form-group.bp3-disabled .bp3-text-muted,
- .bp3-dark .bp3-form-group.bp3-disabled .bp3-form-helper-text{
- color:rgba(167, 182, 194, 0.6) !important; }
-.bp3-input-group{
- display:block;
- position:relative; }
- .bp3-input-group .bp3-input{
- position:relative;
- width:100%; }
- .bp3-input-group .bp3-input:not(:first-child){
- padding-left:30px; }
- .bp3-input-group .bp3-input:not(:last-child){
- padding-right:30px; }
- .bp3-input-group .bp3-input-action,
- .bp3-input-group > .bp3-input-left-container,
- .bp3-input-group > .bp3-button,
- .bp3-input-group > .bp3-icon{
- position:absolute;
- top:0; }
- .bp3-input-group .bp3-input-action:first-child,
- .bp3-input-group > .bp3-input-left-container:first-child,
- .bp3-input-group > .bp3-button:first-child,
- .bp3-input-group > .bp3-icon:first-child{
- left:0; }
- .bp3-input-group .bp3-input-action:last-child,
- .bp3-input-group > .bp3-input-left-container:last-child,
- .bp3-input-group > .bp3-button:last-child,
- .bp3-input-group > .bp3-icon:last-child{
- right:0; }
- .bp3-input-group .bp3-button{
- min-height:24px;
- min-width:24px;
- margin:3px;
- padding:0 7px; }
- .bp3-input-group .bp3-button:empty{
- padding:0; }
- .bp3-input-group > .bp3-input-left-container,
- .bp3-input-group > .bp3-icon{
- z-index:1; }
- .bp3-input-group > .bp3-input-left-container > .bp3-icon,
- .bp3-input-group > .bp3-icon{
- color:#5c7080; }
- .bp3-input-group > .bp3-input-left-container > .bp3-icon:empty,
- .bp3-input-group > .bp3-icon:empty{
- font-family:"Icons16", sans-serif;
- font-size:16px;
- font-style:normal;
- font-weight:400;
- line-height:1;
- -moz-osx-font-smoothing:grayscale;
- -webkit-font-smoothing:antialiased; }
- .bp3-input-group > .bp3-input-left-container > .bp3-icon,
- .bp3-input-group > .bp3-icon,
- .bp3-input-group .bp3-input-action > .bp3-spinner{
- margin:7px; }
- .bp3-input-group .bp3-tag{
- margin:5px; }
- .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:not(:hover):not(:focus),
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:not(:hover):not(:focus){
- color:#5c7080; }
- .bp3-dark .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:not(:hover):not(:focus), .bp3-dark
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:not(:hover):not(:focus){
- color:#a7b6c2; }
- .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon, .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon-standard, .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon-large,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon-standard,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:not(:hover):not(:focus) .bp3-icon-large{
- color:#5c7080; }
- .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:disabled,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:disabled{
- color:rgba(92, 112, 128, 0.6) !important; }
- .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:disabled .bp3-icon, .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:disabled .bp3-icon-standard, .bp3-input-group .bp3-input:not(:focus) + .bp3-button.bp3-minimal:disabled .bp3-icon-large,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:disabled .bp3-icon,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:disabled .bp3-icon-standard,
- .bp3-input-group .bp3-input:not(:focus) + .bp3-input-action .bp3-button.bp3-minimal:disabled .bp3-icon-large{
- color:rgba(92, 112, 128, 0.6) !important; }
- .bp3-input-group.bp3-disabled{
- cursor:not-allowed; }
- .bp3-input-group.bp3-disabled .bp3-icon{
- color:rgba(92, 112, 128, 0.6); }
- .bp3-input-group.bp3-large .bp3-button{
- min-height:30px;
- min-width:30px;
- margin:5px; }
- .bp3-input-group.bp3-large > .bp3-input-left-container > .bp3-icon,
- .bp3-input-group.bp3-large > .bp3-icon,
- .bp3-input-group.bp3-large .bp3-input-action > .bp3-spinner{
- margin:12px; }
- .bp3-input-group.bp3-large .bp3-input{
- font-size:16px;
- height:40px;
- line-height:40px; }
- .bp3-input-group.bp3-large .bp3-input[type="search"], .bp3-input-group.bp3-large .bp3-input.bp3-round{
- padding:0 15px; }
- .bp3-input-group.bp3-large .bp3-input:not(:first-child){
- padding-left:40px; }
- .bp3-input-group.bp3-large .bp3-input:not(:last-child){
- padding-right:40px; }
- .bp3-input-group.bp3-small .bp3-button{
- min-height:20px;
- min-width:20px;
- margin:2px; }
- .bp3-input-group.bp3-small .bp3-tag{
- min-height:20px;
- min-width:20px;
- margin:2px; }
- .bp3-input-group.bp3-small > .bp3-input-left-container > .bp3-icon,
- .bp3-input-group.bp3-small > .bp3-icon,
- .bp3-input-group.bp3-small .bp3-input-action > .bp3-spinner{
- margin:4px; }
- .bp3-input-group.bp3-small .bp3-input{
- font-size:12px;
- height:24px;
- line-height:24px;
- padding-left:8px;
- padding-right:8px; }
- .bp3-input-group.bp3-small .bp3-input[type="search"], .bp3-input-group.bp3-small .bp3-input.bp3-round{
- padding:0 12px; }
- .bp3-input-group.bp3-small .bp3-input:not(:first-child){
- padding-left:24px; }
- .bp3-input-group.bp3-small .bp3-input:not(:last-child){
- padding-right:24px; }
- .bp3-input-group.bp3-fill{
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto;
- width:100%; }
- .bp3-input-group.bp3-round .bp3-button,
- .bp3-input-group.bp3-round .bp3-input,
- .bp3-input-group.bp3-round .bp3-tag{
- border-radius:30px; }
- .bp3-dark .bp3-input-group .bp3-icon{
- color:#a7b6c2; }
- .bp3-dark .bp3-input-group.bp3-disabled .bp3-icon{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-input-group.bp3-intent-primary .bp3-input{
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input-group.bp3-intent-primary .bp3-input:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input-group.bp3-intent-primary .bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #137cbd;
- box-shadow:inset 0 0 0 1px #137cbd; }
- .bp3-input-group.bp3-intent-primary .bp3-input:disabled, .bp3-input-group.bp3-intent-primary .bp3-input.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input-group.bp3-intent-primary > .bp3-icon{
- color:#106ba3; }
- .bp3-dark .bp3-input-group.bp3-intent-primary > .bp3-icon{
- color:#48aff0; }
- .bp3-input-group.bp3-intent-success .bp3-input{
- -webkit-box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input-group.bp3-intent-success .bp3-input:focus{
- -webkit-box-shadow:0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input-group.bp3-intent-success .bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #0f9960;
- box-shadow:inset 0 0 0 1px #0f9960; }
- .bp3-input-group.bp3-intent-success .bp3-input:disabled, .bp3-input-group.bp3-intent-success .bp3-input.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input-group.bp3-intent-success > .bp3-icon{
- color:#0d8050; }
- .bp3-dark .bp3-input-group.bp3-intent-success > .bp3-icon{
- color:#3dcc91; }
- .bp3-input-group.bp3-intent-warning .bp3-input{
- -webkit-box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input-group.bp3-intent-warning .bp3-input:focus{
- -webkit-box-shadow:0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input-group.bp3-intent-warning .bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #d9822b;
- box-shadow:inset 0 0 0 1px #d9822b; }
- .bp3-input-group.bp3-intent-warning .bp3-input:disabled, .bp3-input-group.bp3-intent-warning .bp3-input.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input-group.bp3-intent-warning > .bp3-icon{
- color:#bf7326; }
- .bp3-dark .bp3-input-group.bp3-intent-warning > .bp3-icon{
- color:#ffb366; }
- .bp3-input-group.bp3-intent-danger .bp3-input{
- -webkit-box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input-group.bp3-intent-danger .bp3-input:focus{
- -webkit-box-shadow:0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input-group.bp3-intent-danger .bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #db3737;
- box-shadow:inset 0 0 0 1px #db3737; }
- .bp3-input-group.bp3-intent-danger .bp3-input:disabled, .bp3-input-group.bp3-intent-danger .bp3-input.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input-group.bp3-intent-danger > .bp3-icon{
- color:#c23030; }
- .bp3-dark .bp3-input-group.bp3-intent-danger > .bp3-icon{
- color:#ff7373; }
-.bp3-input{
- -webkit-appearance:none;
- -moz-appearance:none;
- appearance:none;
- background:#ffffff;
- border:none;
- border-radius:3px;
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- color:#182026;
- font-size:14px;
- font-weight:400;
- height:30px;
- line-height:30px;
- outline:none;
- padding:0 10px;
- -webkit-transition:-webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:-webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9), -webkit-box-shadow 100ms cubic-bezier(0.4, 1, 0.75, 0.9);
- vertical-align:middle; }
- .bp3-input::-webkit-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input::-moz-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input:-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input::-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input::placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input:focus, .bp3-input.bp3-active{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input[type="search"], .bp3-input.bp3-round{
- border-radius:30px;
- -webkit-box-sizing:border-box;
- box-sizing:border-box;
- padding-left:10px; }
- .bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.15);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.15); }
- .bp3-input:disabled, .bp3-input.bp3-disabled{
- background:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- resize:none; }
- .bp3-input.bp3-large{
- font-size:16px;
- height:40px;
- line-height:40px; }
- .bp3-input.bp3-large[type="search"], .bp3-input.bp3-large.bp3-round{
- padding:0 15px; }
- .bp3-input.bp3-small{
- font-size:12px;
- height:24px;
- line-height:24px;
- padding-left:8px;
- padding-right:8px; }
- .bp3-input.bp3-small[type="search"], .bp3-input.bp3-small.bp3-round{
- padding:0 12px; }
- .bp3-input.bp3-fill{
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto;
- width:100%; }
- .bp3-dark .bp3-input{
- background:rgba(16, 22, 26, 0.3);
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa; }
- .bp3-dark .bp3-input::-webkit-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-input::-moz-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-input:-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-input::-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-input::placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-input:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input:disabled, .bp3-dark .bp3-input.bp3-disabled{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-input.bp3-intent-primary{
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-primary:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-primary[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #137cbd;
- box-shadow:inset 0 0 0 1px #137cbd; }
- .bp3-input.bp3-intent-primary:disabled, .bp3-input.bp3-intent-primary.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-primary{
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px #137cbd, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-primary:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-primary[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #137cbd;
- box-shadow:inset 0 0 0 1px #137cbd; }
- .bp3-dark .bp3-input.bp3-intent-primary:disabled, .bp3-dark .bp3-input.bp3-intent-primary.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input.bp3-intent-success{
- -webkit-box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-success:focus{
- -webkit-box-shadow:0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-success[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #0f9960;
- box-shadow:inset 0 0 0 1px #0f9960; }
- .bp3-input.bp3-intent-success:disabled, .bp3-input.bp3-intent-success.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-success{
- -webkit-box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), 0 0 0 0 rgba(15, 153, 96, 0), inset 0 0 0 1px #0f9960, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-success:focus{
- -webkit-box-shadow:0 0 0 1px #0f9960, 0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #0f9960, 0 0 0 1px #0f9960, 0 0 0 3px rgba(15, 153, 96, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-success[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #0f9960;
- box-shadow:inset 0 0 0 1px #0f9960; }
- .bp3-dark .bp3-input.bp3-intent-success:disabled, .bp3-dark .bp3-input.bp3-intent-success.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input.bp3-intent-warning{
- -webkit-box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-warning:focus{
- -webkit-box-shadow:0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-warning[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #d9822b;
- box-shadow:inset 0 0 0 1px #d9822b; }
- .bp3-input.bp3-intent-warning:disabled, .bp3-input.bp3-intent-warning.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-warning{
- -webkit-box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), 0 0 0 0 rgba(217, 130, 43, 0), inset 0 0 0 1px #d9822b, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-warning:focus{
- -webkit-box-shadow:0 0 0 1px #d9822b, 0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #d9822b, 0 0 0 1px #d9822b, 0 0 0 3px rgba(217, 130, 43, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-warning[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #d9822b;
- box-shadow:inset 0 0 0 1px #d9822b; }
- .bp3-dark .bp3-input.bp3-intent-warning:disabled, .bp3-dark .bp3-input.bp3-intent-warning.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input.bp3-intent-danger{
- -webkit-box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.15), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-danger:focus{
- -webkit-box-shadow:0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-input.bp3-intent-danger[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #db3737;
- box-shadow:inset 0 0 0 1px #db3737; }
- .bp3-input.bp3-intent-danger:disabled, .bp3-input.bp3-intent-danger.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-input.bp3-intent-danger{
- -webkit-box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), 0 0 0 0 rgba(219, 55, 55, 0), inset 0 0 0 1px #db3737, inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-danger:focus{
- -webkit-box-shadow:0 0 0 1px #db3737, 0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #db3737, 0 0 0 1px #db3737, 0 0 0 3px rgba(219, 55, 55, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-input.bp3-intent-danger[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px #db3737;
- box-shadow:inset 0 0 0 1px #db3737; }
- .bp3-dark .bp3-input.bp3-intent-danger:disabled, .bp3-dark .bp3-input.bp3-intent-danger.bp3-disabled{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-input::-ms-clear{
- display:none; }
-textarea.bp3-input{
- max-width:100%;
- padding:10px; }
- textarea.bp3-input, textarea.bp3-input.bp3-large, textarea.bp3-input.bp3-small{
- height:auto;
- line-height:inherit; }
- textarea.bp3-input.bp3-small{
- padding:8px; }
- .bp3-dark textarea.bp3-input{
- background:rgba(16, 22, 26, 0.3);
- -webkit-box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), 0 0 0 0 rgba(19, 124, 189, 0), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- color:#f5f8fa; }
- .bp3-dark textarea.bp3-input::-webkit-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input::-moz-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input:-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input::-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input::placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark textarea.bp3-input:focus{
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark textarea.bp3-input[readonly]{
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark textarea.bp3-input:disabled, .bp3-dark textarea.bp3-input.bp3-disabled{
- background:rgba(57, 75, 89, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
-label.bp3-label{
- display:block;
- margin-bottom:15px;
- margin-top:0; }
- label.bp3-label .bp3-html-select,
- label.bp3-label .bp3-input,
- label.bp3-label .bp3-select,
- label.bp3-label .bp3-slider,
- label.bp3-label .bp3-popover-wrapper{
- display:block;
- margin-top:5px;
- text-transform:none; }
- label.bp3-label .bp3-button-group{
- margin-top:5px; }
- label.bp3-label .bp3-select select,
- label.bp3-label .bp3-html-select select{
- font-weight:400;
- vertical-align:top;
- width:100%; }
- label.bp3-label.bp3-disabled,
- label.bp3-label.bp3-disabled .bp3-text-muted{
- color:rgba(92, 112, 128, 0.6); }
- label.bp3-label.bp3-inline{
- line-height:30px; }
- label.bp3-label.bp3-inline .bp3-html-select,
- label.bp3-label.bp3-inline .bp3-input,
- label.bp3-label.bp3-inline .bp3-input-group,
- label.bp3-label.bp3-inline .bp3-select,
- label.bp3-label.bp3-inline .bp3-popover-wrapper{
- display:inline-block;
- margin:0 0 0 5px;
- vertical-align:top; }
- label.bp3-label.bp3-inline .bp3-button-group{
- margin:0 0 0 5px; }
- label.bp3-label.bp3-inline .bp3-input-group .bp3-input{
- margin-left:0; }
- label.bp3-label.bp3-inline.bp3-large{
- line-height:40px; }
- label.bp3-label:not(.bp3-inline) .bp3-popover-target{
- display:block; }
- .bp3-dark label.bp3-label{
- color:#f5f8fa; }
- .bp3-dark label.bp3-label.bp3-disabled,
- .bp3-dark label.bp3-label.bp3-disabled .bp3-text-muted{
- color:rgba(167, 182, 194, 0.6); }
-.bp3-numeric-input .bp3-button-group.bp3-vertical > .bp3-button{
- -webkit-box-flex:1;
- -ms-flex:1 1 14px;
- flex:1 1 14px;
- min-height:0;
- padding:0;
- width:30px; }
- .bp3-numeric-input .bp3-button-group.bp3-vertical > .bp3-button:first-child{
- border-radius:0 3px 0 0; }
- .bp3-numeric-input .bp3-button-group.bp3-vertical > .bp3-button:last-child{
- border-radius:0 0 3px 0; }
-
-.bp3-numeric-input .bp3-button-group.bp3-vertical:first-child > .bp3-button:first-child{
- border-radius:3px 0 0 0; }
-
-.bp3-numeric-input .bp3-button-group.bp3-vertical:first-child > .bp3-button:last-child{
- border-radius:0 0 0 3px; }
-
-.bp3-numeric-input.bp3-large .bp3-button-group.bp3-vertical > .bp3-button{
- width:40px; }
-
-form{
- display:block; }
-.bp3-html-select select,
-.bp3-select select{
- display:-webkit-inline-box;
- display:-ms-inline-flexbox;
- display:inline-flex;
- -webkit-box-orient:horizontal;
- -webkit-box-direction:normal;
- -ms-flex-direction:row;
- flex-direction:row;
- -webkit-box-align:center;
- -ms-flex-align:center;
- align-items:center;
- border:none;
- border-radius:3px;
- cursor:pointer;
- font-size:14px;
- -webkit-box-pack:center;
- -ms-flex-pack:center;
- justify-content:center;
- padding:5px 10px;
- text-align:left;
- vertical-align:middle;
- background-color:#f5f8fa;
- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.8)), to(rgba(255, 255, 255, 0)));
- background-image:linear-gradient(to bottom, rgba(255, 255, 255, 0.8), rgba(255, 255, 255, 0));
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- color:#182026;
- -moz-appearance:none;
- -webkit-appearance:none;
- border-radius:3px;
- height:30px;
- padding:0 25px 0 10px;
- width:100%; }
- .bp3-html-select select > *, .bp3-select select > *{
- -webkit-box-flex:0;
- -ms-flex-positive:0;
- flex-grow:0;
- -ms-flex-negative:0;
- flex-shrink:0; }
- .bp3-html-select select > .bp3-fill, .bp3-select select > .bp3-fill{
- -webkit-box-flex:1;
- -ms-flex-positive:1;
- flex-grow:1;
- -ms-flex-negative:1;
- flex-shrink:1; }
- .bp3-html-select select::before,
- .bp3-select select::before, .bp3-html-select select > *, .bp3-select select > *{
- margin-right:7px; }
- .bp3-html-select select:empty::before,
- .bp3-select select:empty::before,
- .bp3-html-select select > :last-child,
- .bp3-select select > :last-child{
- margin-right:0; }
- .bp3-html-select select:hover,
- .bp3-select select:hover{
- background-clip:padding-box;
- background-color:#ebf1f5;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 -1px 0 rgba(16, 22, 26, 0.1); }
- .bp3-html-select select:active,
- .bp3-select select:active, .bp3-html-select select.bp3-active,
- .bp3-select select.bp3-active{
- background-color:#d8e1e8;
- background-image:none;
- -webkit-box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2);
- box-shadow:inset 0 0 0 1px rgba(16, 22, 26, 0.2), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-html-select select:disabled,
- .bp3-select select:disabled, .bp3-html-select select.bp3-disabled,
- .bp3-select select.bp3-disabled{
- background-color:rgba(206, 217, 224, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed;
- outline:none; }
- .bp3-html-select select:disabled.bp3-active,
- .bp3-select select:disabled.bp3-active, .bp3-html-select select:disabled.bp3-active:hover,
- .bp3-select select:disabled.bp3-active:hover, .bp3-html-select select.bp3-disabled.bp3-active,
- .bp3-select select.bp3-disabled.bp3-active, .bp3-html-select select.bp3-disabled.bp3-active:hover,
- .bp3-select select.bp3-disabled.bp3-active:hover{
- background:rgba(206, 217, 224, 0.7); }
-
-.bp3-html-select.bp3-minimal select,
-.bp3-select.bp3-minimal select{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-html-select.bp3-minimal select:hover,
- .bp3-select.bp3-minimal select:hover{
- background:rgba(167, 182, 194, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026;
- text-decoration:none; }
- .bp3-html-select.bp3-minimal select:active,
- .bp3-select.bp3-minimal select:active, .bp3-html-select.bp3-minimal select.bp3-active,
- .bp3-select.bp3-minimal select.bp3-active{
- background:rgba(115, 134, 148, 0.3);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#182026; }
- .bp3-html-select.bp3-minimal select:disabled,
- .bp3-select.bp3-minimal select:disabled, .bp3-html-select.bp3-minimal select:disabled:hover,
- .bp3-select.bp3-minimal select:disabled:hover, .bp3-html-select.bp3-minimal select.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-disabled, .bp3-html-select.bp3-minimal select.bp3-disabled:hover,
- .bp3-select.bp3-minimal select.bp3-disabled:hover{
- background:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
- .bp3-html-select.bp3-minimal select:disabled.bp3-active,
- .bp3-select.bp3-minimal select:disabled.bp3-active, .bp3-html-select.bp3-minimal select:disabled:hover.bp3-active,
- .bp3-select.bp3-minimal select:disabled:hover.bp3-active, .bp3-html-select.bp3-minimal select.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-disabled:hover.bp3-active,
- .bp3-select.bp3-minimal select.bp3-disabled:hover.bp3-active{
- background:rgba(115, 134, 148, 0.3); }
- .bp3-dark .bp3-html-select.bp3-minimal select, .bp3-html-select.bp3-minimal .bp3-dark select,
- .bp3-dark .bp3-select.bp3-minimal select, .bp3-select.bp3-minimal .bp3-dark select{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:inherit; }
- .bp3-dark .bp3-html-select.bp3-minimal select:hover, .bp3-html-select.bp3-minimal .bp3-dark select:hover,
- .bp3-dark .bp3-select.bp3-minimal select:hover, .bp3-select.bp3-minimal .bp3-dark select:hover, .bp3-dark .bp3-html-select.bp3-minimal select:active, .bp3-html-select.bp3-minimal .bp3-dark select:active,
- .bp3-dark .bp3-select.bp3-minimal select:active, .bp3-select.bp3-minimal .bp3-dark select:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-dark .bp3-html-select.bp3-minimal select:hover, .bp3-html-select.bp3-minimal .bp3-dark select:hover,
- .bp3-dark .bp3-select.bp3-minimal select:hover, .bp3-select.bp3-minimal .bp3-dark select:hover{
- background:rgba(138, 155, 168, 0.15); }
- .bp3-dark .bp3-html-select.bp3-minimal select:active, .bp3-html-select.bp3-minimal .bp3-dark select:active,
- .bp3-dark .bp3-select.bp3-minimal select:active, .bp3-select.bp3-minimal .bp3-dark select:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-active{
- background:rgba(138, 155, 168, 0.3);
- color:#f5f8fa; }
- .bp3-dark .bp3-html-select.bp3-minimal select:disabled, .bp3-html-select.bp3-minimal .bp3-dark select:disabled,
- .bp3-dark .bp3-select.bp3-minimal select:disabled, .bp3-select.bp3-minimal .bp3-dark select:disabled, .bp3-dark .bp3-html-select.bp3-minimal select:disabled:hover, .bp3-html-select.bp3-minimal .bp3-dark select:disabled:hover,
- .bp3-dark .bp3-select.bp3-minimal select:disabled:hover, .bp3-select.bp3-minimal .bp3-dark select:disabled:hover, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled:hover, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled:hover,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled:hover, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled:hover{
- background:none;
- color:rgba(167, 182, 194, 0.6);
- cursor:not-allowed; }
- .bp3-dark .bp3-html-select.bp3-minimal select:disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select:disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select:disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select:disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select:disabled:hover.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select:disabled:hover.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select:disabled:hover.bp3-active, .bp3-select.bp3-minimal .bp3-dark select:disabled:hover.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-disabled:hover.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-disabled:hover.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-disabled:hover.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-disabled:hover.bp3-active{
- background:rgba(138, 155, 168, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary,
- .bp3-select.bp3-minimal select.bp3-intent-primary{
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:hover,
- .bp3-select.bp3-minimal select.bp3-intent-primary:hover, .bp3-html-select.bp3-minimal select.bp3-intent-primary:active,
- .bp3-select.bp3-minimal select.bp3-intent-primary:active, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:hover,
- .bp3-select.bp3-minimal select.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.15);
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:active,
- .bp3-select.bp3-minimal select.bp3-intent-primary:active, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#106ba3; }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled,
- .bp3-select.bp3-minimal select.bp3-intent-primary:disabled, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(16, 107, 163, 0.5); }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head, .bp3-select.bp3-minimal select.bp3-intent-primary .bp3-button-spinner .bp3-spinner-head{
- stroke:#106ba3; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary{
- color:#48aff0; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:hover, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:hover,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:hover, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:hover{
- background:rgba(19, 124, 189, 0.2);
- color:#48aff0; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-active{
- background:rgba(19, 124, 189, 0.3);
- color:#48aff0; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled{
- background:none;
- color:rgba(72, 175, 240, 0.5); }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary:disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary:disabled.bp3-active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-primary.bp3-disabled.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-primary.bp3-disabled.bp3-active{
- background:rgba(19, 124, 189, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-success,
- .bp3-select.bp3-minimal select.bp3-intent-success{
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:hover,
- .bp3-select.bp3-minimal select.bp3-intent-success:hover, .bp3-html-select.bp3-minimal select.bp3-intent-success:active,
- .bp3-select.bp3-minimal select.bp3-intent-success:active, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-active{
- background:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:hover,
- .bp3-select.bp3-minimal select.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.15);
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:active,
- .bp3-select.bp3-minimal select.bp3-intent-success:active, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#0d8050; }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled,
- .bp3-select.bp3-minimal select.bp3-intent-success:disabled, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-disabled,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(13, 128, 80, 0.5); }
- .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success:disabled.bp3-active, .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-disabled.bp3-active,
- .bp3-select.bp3-minimal select.bp3-intent-success.bp3-disabled.bp3-active{
- background:rgba(15, 153, 96, 0.3); }
- .bp3-html-select.bp3-minimal select.bp3-intent-success .bp3-button-spinner .bp3-spinner-head, .bp3-select.bp3-minimal select.bp3-intent-success .bp3-button-spinner .bp3-spinner-head{
- stroke:#0d8050; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success{
- color:#3dcc91; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:hover, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:hover,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success:hover, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success:hover{
- background:rgba(15, 153, 96, 0.2);
- color:#3dcc91; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success:active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success:active, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-active,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success.bp3-active, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-active{
- background:rgba(15, 153, 96, 0.3);
- color:#3dcc91; }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success:disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success:disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-success.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-success.bp3-disabled{
- background:none;
- color:rgba(61, 204, 145, 0.5); }
- .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-success:disabled.bp3-active, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-success:disabled.bp3-active,
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- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-danger:disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-danger:disabled, .bp3-dark .bp3-html-select.bp3-minimal select.bp3-intent-danger.bp3-disabled, .bp3-html-select.bp3-minimal .bp3-dark select.bp3-intent-danger.bp3-disabled,
- .bp3-dark .bp3-select.bp3-minimal select.bp3-intent-danger.bp3-disabled, .bp3-select.bp3-minimal .bp3-dark select.bp3-intent-danger.bp3-disabled{
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-.bp3-select.bp3-large select{
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- background-image:-webkit-gradient(linear, left top, left bottom, from(rgba(255, 255, 255, 0.05)), to(rgba(255, 255, 255, 0)));
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- color:#f5f8fa; }
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- background-color:#30404d;
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- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.4); }
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- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.6), inset 0 1px 2px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-html-select select:disabled, .bp3-dark .bp3-select select:disabled, .bp3-dark .bp3-html-select select.bp3-disabled, .bp3-dark .bp3-select select.bp3-disabled{
- background-color:rgba(57, 75, 89, 0.5);
- background-image:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-html-select select:disabled.bp3-active, .bp3-dark .bp3-select select:disabled.bp3-active, .bp3-dark .bp3-html-select select.bp3-disabled.bp3-active, .bp3-dark .bp3-select select.bp3-disabled.bp3-active{
- background:rgba(57, 75, 89, 0.7); }
- .bp3-dark .bp3-html-select select .bp3-button-spinner .bp3-spinner-head, .bp3-dark .bp3-select select .bp3-button-spinner .bp3-spinner-head{
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- stroke:#8a9ba8; }
-
-.bp3-html-select select:disabled,
-.bp3-select select:disabled{
- background-color:rgba(206, 217, 224, 0.5);
- -webkit-box-shadow:none;
- box-shadow:none;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
-
-.bp3-html-select .bp3-icon,
-.bp3-select .bp3-icon, .bp3-select::after{
- color:#5c7080;
- pointer-events:none;
- position:absolute;
- right:7px;
- top:7px; }
- .bp3-html-select .bp3-disabled.bp3-icon,
- .bp3-select .bp3-disabled.bp3-icon, .bp3-disabled.bp3-select::after{
- color:rgba(92, 112, 128, 0.6); }
-.bp3-html-select,
-.bp3-select{
- display:inline-block;
- letter-spacing:normal;
- position:relative;
- vertical-align:middle; }
- .bp3-html-select select::-ms-expand,
- .bp3-select select::-ms-expand{
- display:none; }
- .bp3-html-select .bp3-icon,
- .bp3-select .bp3-icon{
- color:#5c7080; }
- .bp3-html-select .bp3-icon:hover,
- .bp3-select .bp3-icon:hover{
- color:#182026; }
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- .bp3-select .bp3-icon{
- color:#a7b6c2; }
- .bp3-dark .bp3-html-select .bp3-icon:hover, .bp3-dark
- .bp3-select .bp3-icon:hover{
- color:#f5f8fa; }
- .bp3-html-select.bp3-large::after,
- .bp3-html-select.bp3-large .bp3-icon,
- .bp3-select.bp3-large::after,
- .bp3-select.bp3-large .bp3-icon{
- right:12px;
- top:12px; }
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- .bp3-html-select.bp3-fill select,
- .bp3-select.bp3-fill,
- .bp3-select.bp3-fill select{
- width:100%; }
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- .bp3-select option{
- background-color:#30404d;
- color:#f5f8fa; }
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- .bp3-select option:disabled{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-html-select::after, .bp3-dark
- .bp3-select::after{
- color:#a7b6c2; }
-
-.bp3-select::after{
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- font-size:16px;
- font-style:normal;
- font-weight:400;
- line-height:1;
- -moz-osx-font-smoothing:grayscale;
- -webkit-font-smoothing:antialiased;
- content:""; }
-.bp3-running-text table, table.bp3-html-table{
- border-spacing:0;
- font-size:14px; }
- .bp3-running-text table th, table.bp3-html-table th,
- .bp3-running-text table td,
- table.bp3-html-table td{
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- text-align:left;
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- color:#182026;
- font-weight:600; }
-
- .bp3-running-text table td,
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- box-shadow:inset 0 1px 0 0 rgba(16, 22, 26, 0.15); }
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- color:#f5f8fa; }
- .bp3-dark .bp3-running-text table td, .bp3-running-text .bp3-dark table td, .bp3-dark table.bp3-html-table td{
- color:#f5f8fa; }
- .bp3-dark .bp3-running-text table tbody tr:first-child th, .bp3-running-text .bp3-dark table tbody tr:first-child th, .bp3-dark table.bp3-html-table tbody tr:first-child th,
- .bp3-dark .bp3-running-text table tbody tr:first-child td,
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- .bp3-dark table.bp3-html-table tbody tr:first-child td,
- .bp3-dark .bp3-running-text table tfoot tr:first-child th,
- .bp3-running-text .bp3-dark table tfoot tr:first-child th,
- .bp3-dark table.bp3-html-table tfoot tr:first-child th,
- .bp3-dark .bp3-running-text table tfoot tr:first-child td,
- .bp3-running-text .bp3-dark table tfoot tr:first-child td,
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- -webkit-box-shadow:inset 0 1px 0 0 rgba(255, 255, 255, 0.15);
- box-shadow:inset 0 1px 0 0 rgba(255, 255, 255, 0.15); }
-
-table.bp3-html-table.bp3-html-table-condensed th,
-table.bp3-html-table.bp3-html-table-condensed td, table.bp3-html-table.bp3-small th,
-table.bp3-html-table.bp3-small td{
- padding-bottom:6px;
- padding-top:6px; }
-
-table.bp3-html-table.bp3-html-table-striped tbody tr:nth-child(odd) td{
- background:rgba(191, 204, 214, 0.15); }
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- box-shadow:inset 1px 0 0 0 rgba(16, 22, 26, 0.15); }
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-table.bp3-html-table.bp3-html-table-bordered tbody tr td,
-table.bp3-html-table.bp3-html-table-bordered tfoot tr td{
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- box-shadow:inset 0 1px 0 0 rgba(16, 22, 26, 0.15); }
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- box-shadow:inset 1px 1px 0 0 rgba(16, 22, 26, 0.15); }
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-table.bp3-html-table.bp3-html-table-bordered.bp3-html-table-striped tbody tr:not(:first-child) td{
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- box-shadow:none; }
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- -webkit-box-shadow:inset 1px 0 0 0 rgba(16, 22, 26, 0.15);
- box-shadow:inset 1px 0 0 0 rgba(16, 22, 26, 0.15); }
-
-table.bp3-html-table.bp3-interactive tbody tr:hover td{
- background-color:rgba(191, 204, 214, 0.3);
- cursor:pointer; }
-
-table.bp3-html-table.bp3-interactive tbody tr:active td{
- background-color:rgba(191, 204, 214, 0.4); }
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-.bp3-dark table.bp3-html-table{ }
- .bp3-dark table.bp3-html-table.bp3-html-table-striped tbody tr:nth-child(odd) td{
- background:rgba(92, 112, 128, 0.15); }
- .bp3-dark table.bp3-html-table.bp3-html-table-bordered th:not(:first-child){
- -webkit-box-shadow:inset 1px 0 0 0 rgba(255, 255, 255, 0.15);
- box-shadow:inset 1px 0 0 0 rgba(255, 255, 255, 0.15); }
- .bp3-dark table.bp3-html-table.bp3-html-table-bordered tbody tr td,
- .bp3-dark table.bp3-html-table.bp3-html-table-bordered tfoot tr td{
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- box-shadow:inset 0 1px 0 0 rgba(255, 255, 255, 0.15); }
- .bp3-dark table.bp3-html-table.bp3-html-table-bordered tbody tr td:not(:first-child),
- .bp3-dark table.bp3-html-table.bp3-html-table-bordered tfoot tr td:not(:first-child){
- -webkit-box-shadow:inset 1px 1px 0 0 rgba(255, 255, 255, 0.15);
- box-shadow:inset 1px 1px 0 0 rgba(255, 255, 255, 0.15); }
- .bp3-dark table.bp3-html-table.bp3-html-table-bordered.bp3-html-table-striped tbody tr:not(:first-child) td{
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- box-shadow:0 0 0 1px #0d8050, 0 0 0 3px rgba(13, 128, 80, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-tag-input.bp3-active.bp3-intent-warning{
- -webkit-box-shadow:0 0 0 1px #bf7326, 0 0 0 3px rgba(191, 115, 38, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #bf7326, 0 0 0 3px rgba(191, 115, 38, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-tag-input.bp3-active.bp3-intent-danger{
- -webkit-box-shadow:0 0 0 1px #c23030, 0 0 0 3px rgba(194, 48, 48, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px #c23030, 0 0 0 3px rgba(194, 48, 48, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.2); }
- .bp3-dark .bp3-tag-input .bp3-tag-input-icon, .bp3-tag-input.bp3-dark .bp3-tag-input-icon{
- color:#a7b6c2; }
- .bp3-dark .bp3-tag-input .bp3-input-ghost, .bp3-tag-input.bp3-dark .bp3-input-ghost{
- color:#f5f8fa; }
- .bp3-dark .bp3-tag-input .bp3-input-ghost::-webkit-input-placeholder, .bp3-tag-input.bp3-dark .bp3-input-ghost::-webkit-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-tag-input .bp3-input-ghost::-moz-placeholder, .bp3-tag-input.bp3-dark .bp3-input-ghost::-moz-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-tag-input .bp3-input-ghost:-ms-input-placeholder, .bp3-tag-input.bp3-dark .bp3-input-ghost:-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-tag-input .bp3-input-ghost::-ms-input-placeholder, .bp3-tag-input.bp3-dark .bp3-input-ghost::-ms-input-placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-tag-input .bp3-input-ghost::placeholder, .bp3-tag-input.bp3-dark .bp3-input-ghost::placeholder{
- color:rgba(167, 182, 194, 0.6); }
- .bp3-dark .bp3-tag-input.bp3-active, .bp3-tag-input.bp3-dark.bp3-active{
- background-color:rgba(16, 22, 26, 0.3);
- -webkit-box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #137cbd, 0 0 0 1px #137cbd, 0 0 0 3px rgba(19, 124, 189, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-tag-input.bp3-active.bp3-intent-primary, .bp3-tag-input.bp3-dark.bp3-active.bp3-intent-primary{
- -webkit-box-shadow:0 0 0 1px #106ba3, 0 0 0 3px rgba(16, 107, 163, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #106ba3, 0 0 0 3px rgba(16, 107, 163, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-tag-input.bp3-active.bp3-intent-success, .bp3-tag-input.bp3-dark.bp3-active.bp3-intent-success{
- -webkit-box-shadow:0 0 0 1px #0d8050, 0 0 0 3px rgba(13, 128, 80, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #0d8050, 0 0 0 3px rgba(13, 128, 80, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-tag-input.bp3-active.bp3-intent-warning, .bp3-tag-input.bp3-dark.bp3-active.bp3-intent-warning{
- -webkit-box-shadow:0 0 0 1px #bf7326, 0 0 0 3px rgba(191, 115, 38, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #bf7326, 0 0 0 3px rgba(191, 115, 38, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
- .bp3-dark .bp3-tag-input.bp3-active.bp3-intent-danger, .bp3-tag-input.bp3-dark.bp3-active.bp3-intent-danger{
- -webkit-box-shadow:0 0 0 1px #c23030, 0 0 0 3px rgba(194, 48, 48, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px #c23030, 0 0 0 3px rgba(194, 48, 48, 0.3), inset 0 0 0 1px rgba(16, 22, 26, 0.3), inset 0 1px 1px rgba(16, 22, 26, 0.4); }
-
-.bp3-input-ghost{
- background:none;
- border:none;
- -webkit-box-shadow:none;
- box-shadow:none;
- padding:0; }
- .bp3-input-ghost::-webkit-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input-ghost::-moz-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input-ghost:-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input-ghost::-ms-input-placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input-ghost::placeholder{
- color:rgba(92, 112, 128, 0.6);
- opacity:1; }
- .bp3-input-ghost:focus{
- outline:none !important; }
-.bp3-toast{
- -webkit-box-align:start;
- -ms-flex-align:start;
- align-items:flex-start;
- background-color:#ffffff;
- border-radius:3px;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 2px 4px rgba(16, 22, 26, 0.2), 0 8px 24px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 2px 4px rgba(16, 22, 26, 0.2), 0 8px 24px rgba(16, 22, 26, 0.2);
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- margin:20px 0 0;
- max-width:500px;
- min-width:300px;
- pointer-events:all;
- position:relative !important; }
- .bp3-toast.bp3-toast-enter, .bp3-toast.bp3-toast-appear{
- -webkit-transform:translateY(-40px);
- transform:translateY(-40px); }
- .bp3-toast.bp3-toast-enter-active, .bp3-toast.bp3-toast-appear-active{
- -webkit-transform:translateY(0);
- transform:translateY(0);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:300ms;
- transition-duration:300ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.54, 1.12, 0.38, 1.11);
- transition-timing-function:cubic-bezier(0.54, 1.12, 0.38, 1.11); }
- .bp3-toast.bp3-toast-enter ~ .bp3-toast, .bp3-toast.bp3-toast-appear ~ .bp3-toast{
- -webkit-transform:translateY(-40px);
- transform:translateY(-40px); }
- .bp3-toast.bp3-toast-enter-active ~ .bp3-toast, .bp3-toast.bp3-toast-appear-active ~ .bp3-toast{
- -webkit-transform:translateY(0);
- transform:translateY(0);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:300ms;
- transition-duration:300ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.54, 1.12, 0.38, 1.11);
- transition-timing-function:cubic-bezier(0.54, 1.12, 0.38, 1.11); }
- .bp3-toast.bp3-toast-exit{
- opacity:1;
- -webkit-filter:blur(0);
- filter:blur(0); }
- .bp3-toast.bp3-toast-exit-active{
- opacity:0;
- -webkit-filter:blur(10px);
- filter:blur(10px);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:300ms;
- transition-duration:300ms;
- -webkit-transition-property:opacity, -webkit-filter;
- transition-property:opacity, -webkit-filter;
- transition-property:opacity, filter;
- transition-property:opacity, filter, -webkit-filter;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-toast.bp3-toast-exit ~ .bp3-toast{
- -webkit-transform:translateY(0);
- transform:translateY(0); }
- .bp3-toast.bp3-toast-exit-active ~ .bp3-toast{
- -webkit-transform:translateY(-40px);
- transform:translateY(-40px);
- -webkit-transition-delay:50ms;
- transition-delay:50ms;
- -webkit-transition-duration:100ms;
- transition-duration:100ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-toast .bp3-button-group{
- -webkit-box-flex:0;
- -ms-flex:0 0 auto;
- flex:0 0 auto;
- padding:5px;
- padding-left:0; }
- .bp3-toast > .bp3-icon{
- color:#5c7080;
- margin:12px;
- margin-right:0; }
- .bp3-toast.bp3-dark,
- .bp3-dark .bp3-toast{
- background-color:#394b59;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 2px 4px rgba(16, 22, 26, 0.4), 0 8px 24px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 2px 4px rgba(16, 22, 26, 0.4), 0 8px 24px rgba(16, 22, 26, 0.4); }
- .bp3-toast.bp3-dark > .bp3-icon,
- .bp3-dark .bp3-toast > .bp3-icon{
- color:#a7b6c2; }
- .bp3-toast[class*="bp3-intent-"] a{
- color:rgba(255, 255, 255, 0.7); }
- .bp3-toast[class*="bp3-intent-"] a:hover{
- color:#ffffff; }
- .bp3-toast[class*="bp3-intent-"] > .bp3-icon{
- color:#ffffff; }
- .bp3-toast[class*="bp3-intent-"] .bp3-button, .bp3-toast[class*="bp3-intent-"] .bp3-button::before,
- .bp3-toast[class*="bp3-intent-"] .bp3-button .bp3-icon, .bp3-toast[class*="bp3-intent-"] .bp3-button:active{
- color:rgba(255, 255, 255, 0.7) !important; }
- .bp3-toast[class*="bp3-intent-"] .bp3-button:focus{
- outline-color:rgba(255, 255, 255, 0.5); }
- .bp3-toast[class*="bp3-intent-"] .bp3-button:hover{
- background-color:rgba(255, 255, 255, 0.15) !important;
- color:#ffffff !important; }
- .bp3-toast[class*="bp3-intent-"] .bp3-button:active{
- background-color:rgba(255, 255, 255, 0.3) !important;
- color:#ffffff !important; }
- .bp3-toast[class*="bp3-intent-"] .bp3-button::after{
- background:rgba(255, 255, 255, 0.3) !important; }
- .bp3-toast.bp3-intent-primary{
- background-color:#137cbd;
- color:#ffffff; }
- .bp3-toast.bp3-intent-success{
- background-color:#0f9960;
- color:#ffffff; }
- .bp3-toast.bp3-intent-warning{
- background-color:#d9822b;
- color:#ffffff; }
- .bp3-toast.bp3-intent-danger{
- background-color:#db3737;
- color:#ffffff; }
-
-.bp3-toast-message{
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto;
- padding:11px;
- word-break:break-word; }
-
-.bp3-toast-container{
- -webkit-box-align:center;
- -ms-flex-align:center;
- align-items:center;
- display:-webkit-box !important;
- display:-ms-flexbox !important;
- display:flex !important;
- -webkit-box-orient:vertical;
- -webkit-box-direction:normal;
- -ms-flex-direction:column;
- flex-direction:column;
- left:0;
- overflow:hidden;
- padding:0 20px 20px;
- pointer-events:none;
- right:0;
- z-index:40; }
- .bp3-toast-container.bp3-toast-container-in-portal{
- position:fixed; }
- .bp3-toast-container.bp3-toast-container-inline{
- position:absolute; }
- .bp3-toast-container.bp3-toast-container-top{
- top:0; }
- .bp3-toast-container.bp3-toast-container-bottom{
- bottom:0;
- -webkit-box-orient:vertical;
- -webkit-box-direction:reverse;
- -ms-flex-direction:column-reverse;
- flex-direction:column-reverse;
- top:auto; }
- .bp3-toast-container.bp3-toast-container-left{
- -webkit-box-align:start;
- -ms-flex-align:start;
- align-items:flex-start; }
- .bp3-toast-container.bp3-toast-container-right{
- -webkit-box-align:end;
- -ms-flex-align:end;
- align-items:flex-end; }
-
-.bp3-toast-container-bottom .bp3-toast.bp3-toast-enter:not(.bp3-toast-enter-active),
-.bp3-toast-container-bottom .bp3-toast.bp3-toast-enter:not(.bp3-toast-enter-active) ~ .bp3-toast, .bp3-toast-container-bottom .bp3-toast.bp3-toast-appear:not(.bp3-toast-appear-active),
-.bp3-toast-container-bottom .bp3-toast.bp3-toast-appear:not(.bp3-toast-appear-active) ~ .bp3-toast,
-.bp3-toast-container-bottom .bp3-toast.bp3-toast-exit-active ~ .bp3-toast,
-.bp3-toast-container-bottom .bp3-toast.bp3-toast-leave-active ~ .bp3-toast{
- -webkit-transform:translateY(60px);
- transform:translateY(60px); }
-.bp3-tooltip{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 2px 4px rgba(16, 22, 26, 0.2), 0 8px 24px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 2px 4px rgba(16, 22, 26, 0.2), 0 8px 24px rgba(16, 22, 26, 0.2);
- -webkit-transform:scale(1);
- transform:scale(1); }
- .bp3-tooltip .bp3-popover-arrow{
- height:22px;
- position:absolute;
- width:22px; }
- .bp3-tooltip .bp3-popover-arrow::before{
- height:14px;
- margin:4px;
- width:14px; }
- .bp3-tether-element-attached-bottom.bp3-tether-target-attached-top > .bp3-tooltip{
- margin-bottom:11px;
- margin-top:-11px; }
- .bp3-tether-element-attached-bottom.bp3-tether-target-attached-top > .bp3-tooltip > .bp3-popover-arrow{
- bottom:-8px; }
- .bp3-tether-element-attached-bottom.bp3-tether-target-attached-top > .bp3-tooltip > .bp3-popover-arrow svg{
- -webkit-transform:rotate(-90deg);
- transform:rotate(-90deg); }
- .bp3-tether-element-attached-left.bp3-tether-target-attached-right > .bp3-tooltip{
- margin-left:11px; }
- .bp3-tether-element-attached-left.bp3-tether-target-attached-right > .bp3-tooltip > .bp3-popover-arrow{
- left:-8px; }
- .bp3-tether-element-attached-left.bp3-tether-target-attached-right > .bp3-tooltip > .bp3-popover-arrow svg{
- -webkit-transform:rotate(0);
- transform:rotate(0); }
- .bp3-tether-element-attached-top.bp3-tether-target-attached-bottom > .bp3-tooltip{
- margin-top:11px; }
- .bp3-tether-element-attached-top.bp3-tether-target-attached-bottom > .bp3-tooltip > .bp3-popover-arrow{
- top:-8px; }
- .bp3-tether-element-attached-top.bp3-tether-target-attached-bottom > .bp3-tooltip > .bp3-popover-arrow svg{
- -webkit-transform:rotate(90deg);
- transform:rotate(90deg); }
- .bp3-tether-element-attached-right.bp3-tether-target-attached-left > .bp3-tooltip{
- margin-left:-11px;
- margin-right:11px; }
- .bp3-tether-element-attached-right.bp3-tether-target-attached-left > .bp3-tooltip > .bp3-popover-arrow{
- right:-8px; }
- .bp3-tether-element-attached-right.bp3-tether-target-attached-left > .bp3-tooltip > .bp3-popover-arrow svg{
- -webkit-transform:rotate(180deg);
- transform:rotate(180deg); }
- .bp3-tether-element-attached-middle > .bp3-tooltip > .bp3-popover-arrow{
- top:50%;
- -webkit-transform:translateY(-50%);
- transform:translateY(-50%); }
- .bp3-tether-element-attached-center > .bp3-tooltip > .bp3-popover-arrow{
- right:50%;
- -webkit-transform:translateX(50%);
- transform:translateX(50%); }
- .bp3-tether-element-attached-top.bp3-tether-target-attached-top > .bp3-tooltip > .bp3-popover-arrow{
- top:-0.22183px; }
- .bp3-tether-element-attached-right.bp3-tether-target-attached-right > .bp3-tooltip > .bp3-popover-arrow{
- right:-0.22183px; }
- .bp3-tether-element-attached-left.bp3-tether-target-attached-left > .bp3-tooltip > .bp3-popover-arrow{
- left:-0.22183px; }
- .bp3-tether-element-attached-bottom.bp3-tether-target-attached-bottom > .bp3-tooltip > .bp3-popover-arrow{
- bottom:-0.22183px; }
- .bp3-tether-element-attached-top.bp3-tether-element-attached-left > .bp3-tooltip{
- -webkit-transform-origin:top left;
- transform-origin:top left; }
- .bp3-tether-element-attached-top.bp3-tether-element-attached-center > .bp3-tooltip{
- -webkit-transform-origin:top center;
- transform-origin:top center; }
- .bp3-tether-element-attached-top.bp3-tether-element-attached-right > .bp3-tooltip{
- -webkit-transform-origin:top right;
- transform-origin:top right; }
- .bp3-tether-element-attached-middle.bp3-tether-element-attached-left > .bp3-tooltip{
- -webkit-transform-origin:center left;
- transform-origin:center left; }
- .bp3-tether-element-attached-middle.bp3-tether-element-attached-center > .bp3-tooltip{
- -webkit-transform-origin:center center;
- transform-origin:center center; }
- .bp3-tether-element-attached-middle.bp3-tether-element-attached-right > .bp3-tooltip{
- -webkit-transform-origin:center right;
- transform-origin:center right; }
- .bp3-tether-element-attached-bottom.bp3-tether-element-attached-left > .bp3-tooltip{
- -webkit-transform-origin:bottom left;
- transform-origin:bottom left; }
- .bp3-tether-element-attached-bottom.bp3-tether-element-attached-center > .bp3-tooltip{
- -webkit-transform-origin:bottom center;
- transform-origin:bottom center; }
- .bp3-tether-element-attached-bottom.bp3-tether-element-attached-right > .bp3-tooltip{
- -webkit-transform-origin:bottom right;
- transform-origin:bottom right; }
- .bp3-tooltip .bp3-popover-content{
- background:#394b59;
- color:#f5f8fa; }
- .bp3-tooltip .bp3-popover-arrow::before{
- -webkit-box-shadow:1px 1px 6px rgba(16, 22, 26, 0.2);
- box-shadow:1px 1px 6px rgba(16, 22, 26, 0.2); }
- .bp3-tooltip .bp3-popover-arrow-border{
- fill:#10161a;
- fill-opacity:0.1; }
- .bp3-tooltip .bp3-popover-arrow-fill{
- fill:#394b59; }
- .bp3-popover-enter > .bp3-tooltip, .bp3-popover-appear > .bp3-tooltip{
- -webkit-transform:scale(0.8);
- transform:scale(0.8); }
- .bp3-popover-enter-active > .bp3-tooltip, .bp3-popover-appear-active > .bp3-tooltip{
- -webkit-transform:scale(1);
- transform:scale(1);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:100ms;
- transition-duration:100ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-popover-exit > .bp3-tooltip{
- -webkit-transform:scale(1);
- transform:scale(1); }
- .bp3-popover-exit-active > .bp3-tooltip{
- -webkit-transform:scale(0.8);
- transform:scale(0.8);
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:100ms;
- transition-duration:100ms;
- -webkit-transition-property:-webkit-transform;
- transition-property:-webkit-transform;
- transition-property:transform;
- transition-property:transform, -webkit-transform;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-tooltip .bp3-popover-content{
- padding:10px 12px; }
- .bp3-tooltip.bp3-dark,
- .bp3-dark .bp3-tooltip{
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 2px 4px rgba(16, 22, 26, 0.4), 0 8px 24px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 2px 4px rgba(16, 22, 26, 0.4), 0 8px 24px rgba(16, 22, 26, 0.4); }
- .bp3-tooltip.bp3-dark .bp3-popover-content,
- .bp3-dark .bp3-tooltip .bp3-popover-content{
- background:#e1e8ed;
- color:#394b59; }
- .bp3-tooltip.bp3-dark .bp3-popover-arrow::before,
- .bp3-dark .bp3-tooltip .bp3-popover-arrow::before{
- -webkit-box-shadow:1px 1px 6px rgba(16, 22, 26, 0.4);
- box-shadow:1px 1px 6px rgba(16, 22, 26, 0.4); }
- .bp3-tooltip.bp3-dark .bp3-popover-arrow-border,
- .bp3-dark .bp3-tooltip .bp3-popover-arrow-border{
- fill:#10161a;
- fill-opacity:0.2; }
- .bp3-tooltip.bp3-dark .bp3-popover-arrow-fill,
- .bp3-dark .bp3-tooltip .bp3-popover-arrow-fill{
- fill:#e1e8ed; }
- .bp3-tooltip.bp3-intent-primary .bp3-popover-content{
- background:#137cbd;
- color:#ffffff; }
- .bp3-tooltip.bp3-intent-primary .bp3-popover-arrow-fill{
- fill:#137cbd; }
- .bp3-tooltip.bp3-intent-success .bp3-popover-content{
- background:#0f9960;
- color:#ffffff; }
- .bp3-tooltip.bp3-intent-success .bp3-popover-arrow-fill{
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- .bp3-tooltip.bp3-intent-warning .bp3-popover-content{
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- color:#ffffff; }
- .bp3-tooltip.bp3-intent-warning .bp3-popover-arrow-fill{
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- .bp3-tooltip.bp3-intent-danger .bp3-popover-content{
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- color:#ffffff; }
- .bp3-tooltip.bp3-intent-danger .bp3-popover-arrow-fill{
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-.bp3-tooltip-indicator{
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- cursor:help; }
-.bp3-tree .bp3-icon, .bp3-tree .bp3-icon-standard, .bp3-tree .bp3-icon-large{
- color:#5c7080; }
- .bp3-tree .bp3-icon.bp3-intent-primary, .bp3-tree .bp3-icon-standard.bp3-intent-primary, .bp3-tree .bp3-icon-large.bp3-intent-primary{
- color:#137cbd; }
- .bp3-tree .bp3-icon.bp3-intent-success, .bp3-tree .bp3-icon-standard.bp3-intent-success, .bp3-tree .bp3-icon-large.bp3-intent-success{
- color:#0f9960; }
- .bp3-tree .bp3-icon.bp3-intent-warning, .bp3-tree .bp3-icon-standard.bp3-intent-warning, .bp3-tree .bp3-icon-large.bp3-intent-warning{
- color:#d9822b; }
- .bp3-tree .bp3-icon.bp3-intent-danger, .bp3-tree .bp3-icon-standard.bp3-intent-danger, .bp3-tree .bp3-icon-large.bp3-intent-danger{
- color:#db3737; }
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-.bp3-tree-node-list{
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- margin:0;
- padding-left:0; }
-
-.bp3-tree-root{
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- cursor:default;
- padding-left:0;
- position:relative; }
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-.bp3-tree-node-content-0{
- padding-left:0px; }
-
-.bp3-tree-node-content-1{
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-.bp3-tree-node-content-2{
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-.bp3-tree-node-content-3{
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-.bp3-tree-node-content-4{
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-.bp3-tree-node-content-5{
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-.bp3-tree-node-content-6{
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-.bp3-tree-node-content-7{
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-.bp3-tree-node-content-8{
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-.bp3-tree-node-content-9{
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-.bp3-tree-node-content-10{
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-.bp3-tree-node-content-11{
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-
-.bp3-tree-node-content-12{
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-.bp3-tree-node-content-13{
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-.bp3-tree-node-content-14{
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-.bp3-tree-node-content-15{
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-.bp3-tree-node-content-16{
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-.bp3-tree-node-content-17{
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-.bp3-tree-node-content-18{
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-.bp3-tree-node-content-19{
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-.bp3-tree-node-content-20{
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-
-.bp3-tree-node-content{
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- align-items:center;
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex;
- height:30px;
- padding-right:5px;
- width:100%; }
- .bp3-tree-node-content:hover{
- background-color:rgba(191, 204, 214, 0.4); }
-
-.bp3-tree-node-caret,
-.bp3-tree-node-caret-none{
- min-width:30px; }
-
-.bp3-tree-node-caret{
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- cursor:pointer;
- padding:7px;
- -webkit-transform:rotate(0deg);
- transform:rotate(0deg);
- -webkit-transition:-webkit-transform 200ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:-webkit-transform 200ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:transform 200ms cubic-bezier(0.4, 1, 0.75, 0.9);
- transition:transform 200ms cubic-bezier(0.4, 1, 0.75, 0.9), -webkit-transform 200ms cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-tree-node-caret:hover{
- color:#182026; }
- .bp3-dark .bp3-tree-node-caret{
- color:#a7b6c2; }
- .bp3-dark .bp3-tree-node-caret:hover{
- color:#f5f8fa; }
- .bp3-tree-node-caret.bp3-tree-node-caret-open{
- -webkit-transform:rotate(90deg);
- transform:rotate(90deg); }
- .bp3-tree-node-caret.bp3-icon-standard::before{
- content:""; }
-
-.bp3-tree-node-icon{
- margin-right:7px;
- position:relative; }
-
-.bp3-tree-node-label{
- overflow:hidden;
- text-overflow:ellipsis;
- white-space:nowrap;
- word-wrap:normal;
- -webkit-box-flex:1;
- -ms-flex:1 1 auto;
- flex:1 1 auto;
- position:relative;
- -webkit-user-select:none;
- -moz-user-select:none;
- -ms-user-select:none;
- user-select:none; }
- .bp3-tree-node-label span{
- display:inline; }
-
-.bp3-tree-node-secondary-label{
- padding:0 5px;
- -webkit-user-select:none;
- -moz-user-select:none;
- -ms-user-select:none;
- user-select:none; }
- .bp3-tree-node-secondary-label .bp3-popover-wrapper,
- .bp3-tree-node-secondary-label .bp3-popover-target{
- -webkit-box-align:center;
- -ms-flex-align:center;
- align-items:center;
- display:-webkit-box;
- display:-ms-flexbox;
- display:flex; }
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-.bp3-tree-node.bp3-disabled .bp3-tree-node-content{
- background-color:inherit;
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
-
-.bp3-tree-node.bp3-disabled .bp3-tree-node-caret,
-.bp3-tree-node.bp3-disabled .bp3-tree-node-icon{
- color:rgba(92, 112, 128, 0.6);
- cursor:not-allowed; }
-
-.bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content{
- background-color:#137cbd; }
- .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content,
- .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content .bp3-icon, .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content .bp3-icon-standard, .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content .bp3-icon-large{
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- .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content .bp3-tree-node-caret::before{
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- color:#ffffff; }
-
-.bp3-dark .bp3-tree-node-content:hover{
- background-color:rgba(92, 112, 128, 0.3); }
-
-.bp3-dark .bp3-tree .bp3-icon, .bp3-dark .bp3-tree .bp3-icon-standard, .bp3-dark .bp3-tree .bp3-icon-large{
- color:#a7b6c2; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-primary, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-primary, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-primary{
- color:#137cbd; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-success, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-success, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-success{
- color:#0f9960; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-warning, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-warning, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-warning{
- color:#d9822b; }
- .bp3-dark .bp3-tree .bp3-icon.bp3-intent-danger, .bp3-dark .bp3-tree .bp3-icon-standard.bp3-intent-danger, .bp3-dark .bp3-tree .bp3-icon-large.bp3-intent-danger{
- color:#db3737; }
-
-.bp3-dark .bp3-tree-node.bp3-tree-node-selected > .bp3-tree-node-content{
- background-color:#137cbd; }
-.bp3-omnibar{
- -webkit-filter:blur(0);
- filter:blur(0);
- opacity:1;
- background-color:#ffffff;
- border-radius:3px;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 4px 8px rgba(16, 22, 26, 0.2), 0 18px 46px 6px rgba(16, 22, 26, 0.2);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.1), 0 4px 8px rgba(16, 22, 26, 0.2), 0 18px 46px 6px rgba(16, 22, 26, 0.2);
- left:calc(50% - 250px);
- top:20vh;
- width:500px;
- z-index:21; }
- .bp3-omnibar.bp3-overlay-enter, .bp3-omnibar.bp3-overlay-appear{
- -webkit-filter:blur(20px);
- filter:blur(20px);
- opacity:0.2; }
- .bp3-omnibar.bp3-overlay-enter-active, .bp3-omnibar.bp3-overlay-appear-active{
- -webkit-filter:blur(0);
- filter:blur(0);
- opacity:1;
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:200ms;
- transition-duration:200ms;
- -webkit-transition-property:opacity, -webkit-filter;
- transition-property:opacity, -webkit-filter;
- transition-property:filter, opacity;
- transition-property:filter, opacity, -webkit-filter;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-omnibar.bp3-overlay-exit{
- -webkit-filter:blur(0);
- filter:blur(0);
- opacity:1; }
- .bp3-omnibar.bp3-overlay-exit-active{
- -webkit-filter:blur(20px);
- filter:blur(20px);
- opacity:0.2;
- -webkit-transition-delay:0;
- transition-delay:0;
- -webkit-transition-duration:200ms;
- transition-duration:200ms;
- -webkit-transition-property:opacity, -webkit-filter;
- transition-property:opacity, -webkit-filter;
- transition-property:filter, opacity;
- transition-property:filter, opacity, -webkit-filter;
- -webkit-transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9);
- transition-timing-function:cubic-bezier(0.4, 1, 0.75, 0.9); }
- .bp3-omnibar .bp3-input{
- background-color:transparent;
- border-radius:0; }
- .bp3-omnibar .bp3-input, .bp3-omnibar .bp3-input:focus{
- -webkit-box-shadow:none;
- box-shadow:none; }
- .bp3-omnibar .bp3-menu{
- background-color:transparent;
- border-radius:0;
- -webkit-box-shadow:inset 0 1px 0 rgba(16, 22, 26, 0.15);
- box-shadow:inset 0 1px 0 rgba(16, 22, 26, 0.15);
- max-height:calc(60vh - 40px);
- overflow:auto; }
- .bp3-omnibar .bp3-menu:empty{
- display:none; }
- .bp3-dark .bp3-omnibar, .bp3-omnibar.bp3-dark{
- background-color:#30404d;
- -webkit-box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 4px 8px rgba(16, 22, 26, 0.4), 0 18px 46px 6px rgba(16, 22, 26, 0.4);
- box-shadow:0 0 0 1px rgba(16, 22, 26, 0.2), 0 4px 8px rgba(16, 22, 26, 0.4), 0 18px 46px 6px rgba(16, 22, 26, 0.4); }
-
-.bp3-omnibar-overlay .bp3-overlay-backdrop{
- background-color:rgba(16, 22, 26, 0.2); }
-
-.bp3-select-popover .bp3-popover-content{
- padding:5px; }
-
-.bp3-select-popover .bp3-input-group{
- margin-bottom:0; }
-
-.bp3-select-popover .bp3-menu{
- max-height:300px;
- max-width:400px;
- overflow:auto;
- padding:0; }
- .bp3-select-popover .bp3-menu:not(:first-child){
- padding-top:5px; }
-
-.bp3-multi-select{
- min-width:150px; }
-
-.bp3-multi-select-popover .bp3-menu{
- max-height:300px;
- max-width:400px;
- overflow:auto; }
-
-.bp3-select-popover .bp3-popover-content{
- padding:5px; }
-
-.bp3-select-popover .bp3-input-group{
- margin-bottom:0; }
-
-.bp3-select-popover .bp3-menu{
- max-height:300px;
- max-width:400px;
- overflow:auto;
- padding:0; }
- .bp3-select-popover .bp3-menu:not(:first-child){
- padding-top:5px; }
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/* This file was auto-generated by ensureUiComponents() in @jupyterlab/buildutils */
-
-/**
- * (DEPRECATED) Support for consuming icons as CSS background images
- */
-
-/* Icons urls */
-
-:root {
- --jp-icon-add: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTE5IDEzaC02djZoLTJ2LTZINXYtMmg2VjVoMnY2aDZ2MnoiLz4KICA8L2c+Cjwvc3ZnPgo=);
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- --jp-icon-build: url(data:image/svg+xml;base64,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);
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- --jp-icon-caret-left: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KCTxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSIgc2hhcGUtcmVuZGVyaW5nPSJnZW9tZXRyaWNQcmVjaXNpb24iPgoJCTxwYXRoIGQ9Ik0xMC44LDEyLjhMNy4xLDlsMy44LTMuOGwwLDcuNkgxMC44eiIvPgogIDwvZz4KPC9zdmc+Cg==);
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- --jp-icon-code: url(data:image/svg+xml;base64,PHN2ZyB3aWR0aD0iMjIiIGhlaWdodD0iMjIiIHZpZXdCb3g9IjAgMCAyOCAyOCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KCTxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CgkJPHBhdGggZD0iTTExLjQgMTguNkw2LjggMTRMMTEuNCA5LjRMMTAgOEw0IDE0TDEwIDIwTDExLjQgMTguNlpNMTYuNiAxOC42TDIxLjIgMTRMMTYuNiA5LjRMMTggOEwyNCAxNEwxOCAyMEwxNi42IDE4LjZWMTguNloiLz4KCTwvZz4KPC9zdmc+Cg==);
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- --jp-icon-download: url(data:image/svg+xml;base64,PHN2ZyB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIxNiIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTE5IDloLTRWM0g5djZINWw3IDcgNy03ek01IDE4djJoMTR2LTJINXoiLz4KICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-edit: url(data:image/svg+xml;base64,PHN2ZyB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIxNiIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTMgMTcuMjVWMjFoMy43NUwxNy44MSA5Ljk0bC0zLjc1LTMuNzVMMyAxNy4yNXpNMjAuNzEgNy4wNGMuMzktLjM5LjM5LTEuMDIgMC0xLjQxbC0yLjM0LTIuMzRjLS4zOS0uMzktMS4wMi0uMzktMS40MSAwbC0xLjgzIDEuODMgMy43NSAzLjc1IDEuODMtMS44M3oiLz4KICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-ellipses: url(data:image/svg+xml;base64,PHN2ZyB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIxNiIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPGNpcmNsZSBjeD0iNSIgY3k9IjEyIiByPSIyIi8+CiAgICA8Y2lyY2xlIGN4PSIxMiIgY3k9IjEyIiByPSIyIi8+CiAgICA8Y2lyY2xlIGN4PSIxOSIgY3k9IjEyIiByPSIyIi8+CiAgPC9nPgo8L3N2Zz4K);
- --jp-icon-extension: url(data:image/svg+xml;base64,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);
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- --jp-icon-file-upload: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTkgMTZoNnYtNmg0bC03LTctNyA3aDR6bS00IDJoMTR2Mkg1eiIvPgogIDwvZz4KPC9zdmc+Cg==);
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- --jp-icon-html5: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDUxMiA1MTIiPgogIDxwYXRoIGNsYXNzPSJqcC1pY29uMCBqcC1pY29uLXNlbGVjdGFibGUiIGZpbGw9IiMwMDAiIGQ9Ik0xMDguNCAwaDIzdjIyLjhoMjEuMlYwaDIzdjY5aC0yM1Y0NmgtMjF2MjNoLTIzLjJNMjA2IDIzaC0yMC4zVjBoNjMuN3YyM0gyMjl2NDZoLTIzbTUzLjUtNjloMjQuMWwxNC44IDI0LjNMMzEzLjIgMGgyNC4xdjY5aC0yM1YzNC44bC0xNi4xIDI0LjgtMTYuMS0yNC44VjY5aC0yMi42bTg5LjItNjloMjN2NDYuMmgzMi42VjY5aC01NS42Ii8+CiAgPHBhdGggY2xhc3M9ImpwLWljb24tc2VsZWN0YWJsZSIgZmlsbD0iI2U0NGQyNiIgZD0iTTEwNy42IDQ3MWwtMzMtMzcwLjRoMzYyLjhsLTMzIDM3MC4yTDI1NS43IDUxMiIvPgogIDxwYXRoIGNsYXNzPSJqcC1pY29uLXNlbGVjdGFibGUiIGZpbGw9IiNmMTY1MjkiIGQ9Ik0yNTYgNDgwLjVWMTMxaDE0OC4zTDM3NiA0NDciLz4KICA8cGF0aCBjbGFzcz0ianAtaWNvbi1zZWxlY3RhYmxlLWludmVyc2UiIGZpbGw9IiNlYmViZWIiIGQ9Ik0xNDIgMTc2LjNoMTE0djQ1LjRoLTY0LjJsNC4yIDQ2LjVoNjB2NDUuM0gxNTQuNG0yIDIyLjhIMjAybDMuMiAzNi4zIDUwLjggMTMuNnY0Ny40bC05My4yLTI2Ii8+CiAgPHBhdGggY2xhc3M9ImpwLWljb24tc2VsZWN0YWJsZS1pbnZlcnNlIiBmaWxsPSIjZmZmIiBkPSJNMzY5LjYgMTc2LjNIMjU1Ljh2NDUuNGgxMDkuNm0tNC4xIDQ2LjVIMjU1Ljh2NDUuNGg1NmwtNS4zIDU5LTUwLjcgMTMuNnY0Ny4ybDkzLTI1LjgiLz4KPC9zdmc+Cg==);
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- --jp-icon-inspector: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8cGF0aCBjbGFzcz0ianAtaWNvbjMganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNjE2MTYxIiBkPSJNMjAgNEg0Yy0xLjEgMC0xLjk5LjktMS45OSAyTDIgMThjMCAxLjEuOSAyIDIgMmgxNmMxLjEgMCAyLS45IDItMlY2YzAtMS4xLS45LTItMi0yem0tNSAxNEg0di00aDExdjR6bTAtNUg0VjloMTF2NHptNSA1aC00VjloNHY5eiIvPgo8L3N2Zz4K);
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- --jp-icon-julia: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDMyNSAzMDAiPgogIDxnIGNsYXNzPSJqcC1icmFuZDAganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjY2IzYzMzIj4KICAgIDxwYXRoIGQ9Ik0gMTUwLjg5ODQzOCAyMjUgQyAxNTAuODk4NDM4IDI2Ni40MjE4NzUgMTE3LjMyMDMxMiAzMDAgNzUuODk4NDM4IDMwMCBDIDM0LjQ3NjU2MiAzMDAgMC44OTg0MzggMjY2LjQyMTg3NSAwLjg5ODQzOCAyMjUgQyAwLjg5ODQzOCAxODMuNTc4MTI1IDM0LjQ3NjU2MiAxNTAgNzUuODk4NDM4IDE1MCBDIDExNy4zMjAzMTIgMTUwIDE1MC44OTg0MzggMTgzLjU3ODEyNSAxNTAuODk4NDM4IDIyNSIvPgogIDwvZz4KICA8ZyBjbGFzcz0ianAtYnJhbmQwIGpwLWljb24tc2VsZWN0YWJsZSIgZmlsbD0iIzM4OTgyNiI+CiAgICA8cGF0aCBkPSJNIDIzNy41IDc1IEMgMjM3LjUgMTE2LjQyMTg3NSAyMDMuOTIxODc1IDE1MCAxNjIuNSAxNTAgQyAxMjEuMDc4MTI1IDE1MCA4Ny41IDExNi40MjE4NzUgODcuNSA3NSBDIDg3LjUgMzMuNTc4MTI1IDEyMS4wNzgxMjUgMCAxNjIuNSAwIEMgMjAzLjkyMTg3NSAwIDIzNy41IDMzLjU3ODEyNSAyMzcuNSA3NSIvPgogIDwvZz4KICA8ZyBjbGFzcz0ianAtYnJhbmQwIGpwLWljb24tc2VsZWN0YWJsZSIgZmlsbD0iIzk1NThiMiI+CiAgICA8cGF0aCBkPSJNIDMyNC4xMDE1NjIgMjI1IEMgMzI0LjEwMTU2MiAyNjYuNDIxODc1IDI5MC41MjM0MzggMzAwIDI0OS4xMDE1NjIgMzAwIEMgMjA3LjY3OTY4OCAzMDAgMTc0LjEwMTU2MiAyNjYuNDIxODc1IDE3NC4xMDE1NjIgMjI1IEMgMTc0LjEwMTU2MiAxODMuNTc4MTI1IDIwNy42Nzk2ODggMTUwIDI0OS4xMDE1NjIgMTUwIEMgMjkwLjUyMzQzOCAxNTAgMzI0LjEwMTU2MiAxODMuNTc4MTI1IDMyNC4xMDE1NjIgMjI1Ii8+CiAgPC9nPgo8L3N2Zz4K);
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- --jp-icon-jupyterlab-wordmark: 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- --jp-icon-keyboard: url(data:image/svg+xml;base64,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);
- --jp-icon-launcher: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8cGF0aCBjbGFzcz0ianAtaWNvbjMganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNjE2MTYxIiBkPSJNMTkgMTlINVY1aDdWM0g1YTIgMiAwIDAwLTIgMnYxNGEyIDIgMCAwMDIgMmgxNGMxLjEgMCAyLS45IDItMnYtN2gtMnY3ek0xNCAzdjJoMy41OWwtOS44MyA5LjgzIDEuNDEgMS40MUwxOSA2LjQxVjEwaDJWM2gtN3oiLz4KPC9zdmc+Cg==);
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- --jp-icon-link: url(data:image/svg+xml;base64,PHN2ZyB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIxNiIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTMuOSAxMmMwLTEuNzEgMS4zOS0zLjEgMy4xLTMuMWg0VjdIN2MtMi43NiAwLTUgMi4yNC01IDVzMi4yNCA1IDUgNWg0di0xLjlIN2MtMS43MSAwLTMuMS0xLjM5LTMuMS0zLjF6TTggMTNoOHYtMkg4djJ6bTktNmgtNHYxLjloNGMxLjcxIDAgMy4xIDEuMzkgMy4xIDMuMXMtMS4zOSAzLjEtMy4xIDMuMWgtNFYxN2g0YzIuNzYgMCA1LTIuMjQgNS01cy0yLjI0LTUtNS01eiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-list: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICAgIDxwYXRoIGNsYXNzPSJqcC1pY29uMiBqcC1pY29uLXNlbGVjdGFibGUiIGZpbGw9IiM2MTYxNjEiIGQ9Ik0xOSA1djE0SDVWNWgxNG0xLjEtMkgzLjljLS41IDAtLjkuNC0uOS45djE2LjJjMCAuNC40LjkuOS45aDE2LjJjLjQgMCAuOS0uNS45LS45VjMuOWMwLS41LS41LS45LS45LS45ek0xMSA3aDZ2MmgtNlY3em0wIDRoNnYyaC02di0yem0wIDRoNnYyaC02ek03IDdoMnYySDd6bTAgNGgydjJIN3ptMCA0aDJ2Mkg3eiIvPgo8L3N2Zz4=);
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- --jp-icon-pdf: url(data:image/svg+xml;base64,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);
- --jp-icon-python: url(data:image/svg+xml;base64,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);
- --jp-icon-r-kernel: url(data:image/svg+xml;base64,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);
- --jp-icon-react: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMTUwIDE1MCA1NDEuOSAyOTUuMyI+CiAgPGcgY2xhc3M9ImpwLWljb24tYnJhbmQyIGpwLWljb24tc2VsZWN0YWJsZSIgZmlsbD0iIzYxREFGQiI+CiAgICA8cGF0aCBkPSJNNjY2LjMgMjk2LjVjMC0zMi41LTQwLjctNjMuMy0xMDMuMS04Mi40IDE0LjQtNjMuNiA4LTExNC4yLTIwLjItMTMwLjQtNi41LTMuOC0xNC4xLTUuNi0yMi40LTUuNnYyMi4zYzQuNiAwIDguMy45IDExLjQgMi42IDEzLjYgNy44IDE5LjUgMzcuNSAxNC45IDc1LjctMS4xIDkuNC0yLjkgMTkuMy01LjEgMjkuNC0xOS42LTQuOC00MS04LjUtNjMuNS0xMC45LTEzLjUtMTguNS0yNy41LTM1LjMtNDEuNi01MCAzMi42LTMwLjMgNjMuMi00Ni45IDg0LTQ2LjlWNzhjLTI3LjUgMC02My41IDE5LjYtOTkuOSA1My42LTM2LjQtMzMuOC03Mi40LTUzLjItOTkuOS01My4ydjIyLjNjMjAuNyAwIDUxLjQgMTYuNSA4NCA0Ni42LTE0IDE0LjctMjggMzEuNC00MS4zIDQ5LjktMjIuNiAyLjQtNDQgNi4xLTYzLjYgMTEtMi4zLTEwLTQtMTkuNy01LjItMjktNC43LTM4LjIgMS4xLTY3LjkgMTQuNi03NS44IDMtMS44IDYuOS0yLjYgMTEuNS0yLjZWNzguNWMtOC40IDAtMTYgMS44LTIyLjYgNS42LTI4LjEgMTYuMi0zNC40IDY2LjctMTkuOSAxMzAuMS02Mi4yIDE5LjItMTAyLjcgNDkuOS0xMDIuNyA4Mi4zIDAgMzIuNSA0MC43IDYzLjMgMTAzLjEgODIuNC0xNC40IDYzLjYtOCAxMTQuMiAyMC4yIDEzMC40IDYuNSAzLjggMTQuMSA1LjYgMjIuNSA1LjYgMjcuNSAwIDYzLjUtMTkuNiA5OS45LTUzLjYgMzYuNCAzMy44IDcyLjQgNTMuMiA5OS45IDUzLjIgOC40IDAgMTYtMS44IDIyLjYtNS42IDI4LjEtMTYuMiAzNC40LTY2LjcgMTkuOS0xMzAuMSA2Mi0xOS4xIDEwMi41LTQ5LjkgMTAyLjUtODIuM3ptLTEzMC4yLTY2LjdjLTMuNyAxMi45LTguMyAyNi4yLTEzLjUgMzkuNS00LjEtOC04LjQtMTYtMTMuMS0yNC00LjYtOC05LjUtMTUuOC0xNC40LTIzLjQgMTQuMiAyLjEgMjcuOSA0LjcgNDEgNy45em0tNDUuOCAxMDYuNWMtNy44IDEzLjUtMTUuOCAyNi4zLTI0LjEgMzguMi0xNC45IDEuMy0zMCAyLTQ1LjIgMi0xNS4xIDAtMzAuMi0uNy00NS0xLjktOC4zLTExLjktMTYuNC0yNC42LTI0LjItMzgtNy42LTEzLjEtMTQuNS0yNi40LTIwLjgtMzkuOCA2LjItMTMuNCAxMy4yLTI2LjggMjAuNy0zOS45IDcuOC0xMy41IDE1LjgtMjYuMyAyNC4xLTM4LjIgMTQuOS0xLjMgMzAtMiA0NS4yLTIgMTUuMSAwIDMwLjIuNyA0NSAxLjkgOC4zIDExLjkgMTYuNCAyNC42IDI0LjIgMzggNy42IDEzLjEgMTQuNSAyNi40IDIwLjggMzkuOC02LjMgMTMuNC0xMy4yIDI2LjgtMjAuNyAzOS45em0zMi4zLTEzYzUuNCAxMy40IDEwIDI2LjggMTMuOCAzOS44LTEzLjEgMy4yLTI2LjkgNS45LTQxLjIgOCA0LjktNy43IDkuOC0xNS42IDE0LjQtMjMuNyA0LjYtOCA4LjktMTYuMSAxMy0yNC4xek00MjEuMiA0MzBjLTkuMy05LjYtMTguNi0yMC4zLTI3LjgtMzIgOSAuNCAxOC4yLjcgMjcuNS43IDkuNCAwIDE4LjctLjIgMjcuOC0uNy05IDExLjctMTguMyAyMi40LTI3LjUgMzJ6bS03NC40LTU4LjljLTE0LjItMi4xLTI3LjktNC43LTQxLTcuOSAzLjctMTIuOSA4LjMtMjYuMiAxMy41LTM5LjUgNC4xIDggOC40IDE2IDEzLjEgMjQgNC43IDggOS41IDE1LjggMTQuNCAyMy40ek00MjAuNyAxNjNjOS4zIDkuNiAxOC42IDIwLjMgMjcuOCAzMi05LS40LTE4LjItLjctMjcuNS0uNy05LjQgMC0xOC43LjItMjcuOC43IDktMTEuNyAxOC4zLTIyLjQgMjcuNS0zMnptLTc0IDU4LjljLTQuOSA3LjctOS44IDE1LjYtMTQuNCAyMy43LTQuNiA4LTguOSAxNi0xMyAyNC01LjQtMTMuNC0xMC0yNi44LTEzLjgtMzkuOCAxMy4xLTMuMSAyNi45LTUuOCA0MS4yLTcuOXptLTkwLjUgMTI1LjJjLTM1LjQtMTUuMS01OC4zLTM0LjktNTguMy01MC42IDAtMTUuNyAyMi45LTM1LjYgNTguMy01MC42IDguNi0zLjcgMTgtNyAyNy43LTEwLjEgNS43IDE5LjYgMTMuMiA0MCAyMi41IDYwLjktOS4yIDIwLjgtMTYuNiA0MS4xLTIyLjIgNjAuNi05LjktMy4xLTE5LjMtNi41LTI4LTEwLjJ6TTMxMCA0OTBjLTEzLjYtNy44LTE5LjUtMzcuNS0xNC45LTc1LjcgMS4xLTkuNCAyLjktMTkuMyA1LjEtMjkuNCAxOS42IDQuOCA0MSA4LjUgNjMuNSAxMC45IDEzLjUgMTguNSAyNy41IDM1LjMgNDEuNiA1MC0zMi42IDMwLjMtNjMuMiA0Ni45LTg0IDQ2LjktNC41LS4xLTguMy0xLTExLjMtMi43em0yMzcuMi03Ni4yYzQuNyAzOC4yLTEuMSA2Ny45LTE0LjYgNzUuOC0zIDEuOC02LjkgMi42LTExLjUgMi42LTIwLjcgMC01MS40LTE2LjUtODQtNDYuNiAxNC0xNC43IDI4LTMxLjQgNDEuMy00OS45IDIyLjYtMi40IDQ0LTYuMSA2My42LTExIDIuMyAxMC4xIDQuMSAxOS44IDUuMiAyOS4xem0zOC41LTY2LjdjLTguNiAzLjctMTggNy0yNy43IDEwLjEtNS43LTE5LjYtMTMuMi00MC0yMi41LTYwLjkgOS4yLTIwLjggMTYuNi00MS4xIDIyLjItNjAuNiA5LjkgMy4xIDE5LjMgNi41IDI4LjEgMTAuMiAzNS40IDE1LjEgNTguMyAzNC45IDU4LjMgNTAuNi0uMSAxNS43LTIzIDM1LjYtNTguNCA1MC42ek0zMjAuOCA3OC40eiIvPgogICAgPGNpcmNsZSBjeD0iNDIwLjkiIGN5PSIyOTYuNSIgcj0iNDUuNyIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-redo: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIGhlaWdodD0iMjQiIHZpZXdCb3g9IjAgMCAyNCAyNCIgd2lkdGg9IjE2Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgICA8cGF0aCBkPSJNMCAwaDI0djI0SDB6IiBmaWxsPSJub25lIi8+PHBhdGggZD0iTTE4LjQgMTAuNkMxNi41NSA4Ljk5IDE0LjE1IDggMTEuNSA4Yy00LjY1IDAtOC41OCAzLjAzLTkuOTYgNy4yMkwzLjkgMTZjMS4wNS0zLjE5IDQuMDUtNS41IDcuNi01LjUgMS45NSAwIDMuNzMuNzIgNS4xMiAxLjg4TDEzIDE2aDlWN2wtMy42IDMuNnoiLz4KICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-refresh: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTkgMTMuNWMtMi40OSAwLTQuNS0yLjAxLTQuNS00LjVTNi41MSA0LjUgOSA0LjVjMS4yNCAwIDIuMzYuNTIgMy4xNyAxLjMzTDEwIDhoNVYzbC0xLjc2IDEuNzZDMTIuMTUgMy42OCAxMC42NiAzIDkgMyA1LjY5IDMgMy4wMSA1LjY5IDMuMDEgOVM1LjY5IDE1IDkgMTVjMi45NyAwIDUuNDMtMi4xNiA1LjktNWgtMS41MmMtLjQ2IDItMi4yNCAzLjUtNC4zOCAzLjV6Ii8+CiAgICA8L2c+Cjwvc3ZnPgo=);
- --jp-icon-regex: url(data:image/svg+xml;base64,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);
- --jp-icon-run: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTggNXYxNGwxMS03eiIvPgogICAgPC9nPgo8L3N2Zz4K);
- --jp-icon-running: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDUxMiA1MTIiPgogIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICA8cGF0aCBkPSJNMjU2IDhDMTE5IDggOCAxMTkgOCAyNTZzMTExIDI0OCAyNDggMjQ4IDI0OC0xMTEgMjQ4LTI0OFMzOTMgOCAyNTYgOHptOTYgMzI4YzAgOC44LTcuMiAxNi0xNiAxNkgxNzZjLTguOCAwLTE2LTcuMi0xNi0xNlYxNzZjMC04LjggNy4yLTE2IDE2LTE2aDE2MGM4LjggMCAxNiA3LjIgMTYgMTZ2MTYweiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-save: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTE3IDNINWMtMS4xMSAwLTIgLjktMiAydjE0YzAgMS4xLjg5IDIgMiAyaDE0YzEuMSAwIDItLjkgMi0yVjdsLTQtNHptLTUgMTZjLTEuNjYgMC0zLTEuMzQtMy0zczEuMzQtMyAzLTMgMyAxLjM0IDMgMy0xLjM0IDMtMyAzem0zLTEwSDVWNWgxMHY0eiIvPgogICAgPC9nPgo8L3N2Zz4K);
- --jp-icon-search: url(data:image/svg+xml;base64,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);
- --jp-icon-settings: url(data:image/svg+xml;base64,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);
- --jp-icon-spreadsheet: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDIyIDIyIj4KICA8cGF0aCBjbGFzcz0ianAtaWNvbi1jb250cmFzdDEganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNENBRjUwIiBkPSJNMi4yIDIuMnYxNy42aDE3LjZWMi4ySDIuMnptMTUuNCA3LjdoLTUuNVY0LjRoNS41djUuNXpNOS45IDQuNHY1LjVINC40VjQuNGg1LjV6bS01LjUgNy43aDUuNXY1LjVINC40di01LjV6bTcuNyA1LjV2LTUuNWg1LjV2NS41aC01LjV6Ii8+Cjwvc3ZnPgo=);
- --jp-icon-stop: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTAgMGgyNHYyNEgweiIgZmlsbD0ibm9uZSIvPgogICAgICAgIDxwYXRoIGQ9Ik02IDZoMTJ2MTJINnoiLz4KICAgIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-tab: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTIxIDNIM2MtMS4xIDAtMiAuOS0yIDJ2MTRjMCAxLjEuOSAyIDIgMmgxOGMxLjEgMCAyLS45IDItMlY1YzAtMS4xLS45LTItMi0yem0wIDE2SDNWNWgxMHY0aDh2MTB6Ii8+CiAgPC9nPgo8L3N2Zz4K);
- --jp-icon-table-rows: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTAgMGgyNHYyNEgweiIgZmlsbD0ibm9uZSIvPgogICAgICAgIDxwYXRoIGQ9Ik0yMSw4SDNWNGgxOFY4eiBNMjEsMTBIM3Y0aDE4VjEweiBNMjEsMTZIM3Y0aDE4VjE2eiIvPgogICAgPC9nPgo8L3N2Zz4=);
- --jp-icon-tag: url(data:image/svg+xml;base64,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);
- --jp-icon-terminal: url(data:image/svg+xml;base64,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);
- --jp-icon-text-editor: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8cGF0aCBjbGFzcz0ianAtaWNvbjMganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjNjE2MTYxIiBkPSJNMTUgMTVIM3YyaDEydi0yem0wLThIM3YyaDEyVjd6TTMgMTNoMTh2LTJIM3Yyem0wIDhoMTh2LTJIM3Yyek0zIDN2MmgxOFYzSDN6Ii8+Cjwvc3ZnPgo=);
- --jp-icon-toc: url(data:image/svg+xml;base64,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);
- --jp-icon-tree-view: url(data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjI0IiB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIyNCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTAgMGgyNHYyNEgweiIgZmlsbD0ibm9uZSIvPgogICAgICAgIDxwYXRoIGQ9Ik0yMiAxMVYzaC03djNIOVYzSDJ2OGg3VjhoMnYxMGg0djNoN3YtOGgtN3YzaC0yVjhoMnYzeiIvPgogICAgPC9nPgo8L3N2Zz4=);
- --jp-icon-trusted: url(data:image/svg+xml;base64,PHN2ZyBmaWxsPSJub25lIiB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI1Ij4KICAgIDxwYXRoIGNsYXNzPSJqcC1pY29uMiIgc3Ryb2tlPSIjMzMzMzMzIiBzdHJva2Utd2lkdGg9IjIiIHRyYW5zZm9ybT0idHJhbnNsYXRlKDIgMykiIGQ9Ik0xLjg2MDk0IDExLjQ0MDlDMC44MjY0NDggOC43NzAyNyAwLjg2Mzc3OSA2LjA1NzY0IDEuMjQ5MDcgNC4xOTkzMkMyLjQ4MjA2IDMuOTMzNDcgNC4wODA2OCAzLjQwMzQ3IDUuNjAxMDIgMi44NDQ5QzcuMjM1NDkgMi4yNDQ0IDguODU2NjYgMS41ODE1IDkuOTg3NiAxLjA5NTM5QzExLjA1OTcgMS41ODM0MSAxMi42MDk0IDIuMjQ0NCAxNC4yMTggMi44NDMzOUMxNS43NTAzIDMuNDEzOTQgMTcuMzk5NSAzLjk1MjU4IDE4Ljc1MzkgNC4yMTM4NUMxOS4xMzY0IDYuMDcxNzcgMTkuMTcwOSA4Ljc3NzIyIDE4LjEzOSAxMS40NDA5QzE3LjAzMDMgMTQuMzAzMiAxNC42NjY4IDE3LjE4NDQgOS45OTk5OSAxOC45MzU0QzUuMzMzMiAxNy4xODQ0IDIuOTY5NjggMTQuMzAzMiAxLjg2MDk0IDExLjQ0MDlaIi8+CiAgICA8cGF0aCBjbGFzcz0ianAtaWNvbjIiIGZpbGw9IiMzMzMzMzMiIHN0cm9rZT0iIzMzMzMzMyIgdHJhbnNmb3JtPSJ0cmFuc2xhdGUoOCA5Ljg2NzE5KSIgZD0iTTIuODYwMTUgNC44NjUzNUwwLjcyNjU0OSAyLjk5OTU5TDAgMy42MzA0NUwyLjg2MDE1IDYuMTMxNTdMOCAwLjYzMDg3Mkw3LjI3ODU3IDBMMi44NjAxNSA0Ljg2NTM1WiIvPgo8L3N2Zz4K);
- --jp-icon-undo: url(data:image/svg+xml;base64,PHN2ZyB2aWV3Qm94PSIwIDAgMjQgMjQiIHdpZHRoPSIxNiIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTEyLjUgOGMtMi42NSAwLTUuMDUuOTktNi45IDIuNkwyIDd2OWg5bC0zLjYyLTMuNjJjMS4zOS0xLjE2IDMuMTYtMS44OCA1LjEyLTEuODggMy41NCAwIDYuNTUgMi4zMSA3LjYgNS41bDIuMzctLjc4QzIxLjA4IDExLjAzIDE3LjE1IDggMTIuNSA4eiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-vega: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDIyIDIyIj4KICA8ZyBjbGFzcz0ianAtaWNvbjEganAtaWNvbi1zZWxlY3RhYmxlIiBmaWxsPSIjMjEyMTIxIj4KICAgIDxwYXRoIGQ9Ik0xMC42IDUuNGwyLjItMy4ySDIuMnY3LjNsNC02LjZ6Ii8+CiAgICA8cGF0aCBkPSJNMTUuOCAyLjJsLTQuNCA2LjZMNyA2LjNsLTQuOCA4djUuNWgxNy42VjIuMmgtNHptLTcgMTUuNEg1LjV2LTQuNGgzLjN2NC40em00LjQgMEg5LjhWOS44aDMuNHY3Ljh6bTQuNCAwaC0zLjRWNi41aDMuNHYxMS4xeiIvPgogIDwvZz4KPC9zdmc+Cg==);
- --jp-icon-yaml: url(data:image/svg+xml;base64,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);
-}
-
-/* Icon CSS class declarations */
-
-.jp-AddIcon {
- background-image: var(--jp-icon-add);
-}
-.jp-BugIcon {
- background-image: var(--jp-icon-bug);
-}
-.jp-BuildIcon {
- background-image: var(--jp-icon-build);
-}
-.jp-CaretDownEmptyIcon {
- background-image: var(--jp-icon-caret-down-empty);
-}
-.jp-CaretDownEmptyThinIcon {
- background-image: var(--jp-icon-caret-down-empty-thin);
-}
-.jp-CaretDownIcon {
- background-image: var(--jp-icon-caret-down);
-}
-.jp-CaretLeftIcon {
- background-image: var(--jp-icon-caret-left);
-}
-.jp-CaretRightIcon {
- background-image: var(--jp-icon-caret-right);
-}
-.jp-CaretUpEmptyThinIcon {
- background-image: var(--jp-icon-caret-up-empty-thin);
-}
-.jp-CaretUpIcon {
- background-image: var(--jp-icon-caret-up);
-}
-.jp-CaseSensitiveIcon {
- background-image: var(--jp-icon-case-sensitive);
-}
-.jp-CheckIcon {
- background-image: var(--jp-icon-check);
-}
-.jp-CircleEmptyIcon {
- background-image: var(--jp-icon-circle-empty);
-}
-.jp-CircleIcon {
- background-image: var(--jp-icon-circle);
-}
-.jp-ClearIcon {
- background-image: var(--jp-icon-clear);
-}
-.jp-CloseIcon {
- background-image: var(--jp-icon-close);
-}
-.jp-CodeIcon {
- background-image: var(--jp-icon-code);
-}
-.jp-ConsoleIcon {
- background-image: var(--jp-icon-console);
-}
-.jp-CopyIcon {
- background-image: var(--jp-icon-copy);
-}
-.jp-CopyrightIcon {
- background-image: var(--jp-icon-copyright);
-}
-.jp-CutIcon {
- background-image: var(--jp-icon-cut);
-}
-.jp-DownloadIcon {
- background-image: var(--jp-icon-download);
-}
-.jp-EditIcon {
- background-image: var(--jp-icon-edit);
-}
-.jp-EllipsesIcon {
- background-image: var(--jp-icon-ellipses);
-}
-.jp-ExtensionIcon {
- background-image: var(--jp-icon-extension);
-}
-.jp-FastForwardIcon {
- background-image: var(--jp-icon-fast-forward);
-}
-.jp-FileIcon {
- background-image: var(--jp-icon-file);
-}
-.jp-FileUploadIcon {
- background-image: var(--jp-icon-file-upload);
-}
-.jp-FilterListIcon {
- background-image: var(--jp-icon-filter-list);
-}
-.jp-FolderIcon {
- background-image: var(--jp-icon-folder);
-}
-.jp-Html5Icon {
- background-image: var(--jp-icon-html5);
-}
-.jp-ImageIcon {
- background-image: var(--jp-icon-image);
-}
-.jp-InspectorIcon {
- background-image: var(--jp-icon-inspector);
-}
-.jp-JsonIcon {
- background-image: var(--jp-icon-json);
-}
-.jp-JuliaIcon {
- background-image: var(--jp-icon-julia);
-}
-.jp-JupyterFaviconIcon {
- background-image: var(--jp-icon-jupyter-favicon);
-}
-.jp-JupyterIcon {
- background-image: var(--jp-icon-jupyter);
-}
-.jp-JupyterlabWordmarkIcon {
- background-image: var(--jp-icon-jupyterlab-wordmark);
-}
-.jp-KernelIcon {
- background-image: var(--jp-icon-kernel);
-}
-.jp-KeyboardIcon {
- background-image: var(--jp-icon-keyboard);
-}
-.jp-LauncherIcon {
- background-image: var(--jp-icon-launcher);
-}
-.jp-LineFormIcon {
- background-image: var(--jp-icon-line-form);
-}
-.jp-LinkIcon {
- background-image: var(--jp-icon-link);
-}
-.jp-ListIcon {
- background-image: var(--jp-icon-list);
-}
-.jp-ListingsInfoIcon {
- background-image: var(--jp-icon-listings-info);
-}
-.jp-MarkdownIcon {
- background-image: var(--jp-icon-markdown);
-}
-.jp-NewFolderIcon {
- background-image: var(--jp-icon-new-folder);
-}
-.jp-NotTrustedIcon {
- background-image: var(--jp-icon-not-trusted);
-}
-.jp-NotebookIcon {
- background-image: var(--jp-icon-notebook);
-}
-.jp-NumberingIcon {
- background-image: var(--jp-icon-numbering);
-}
-.jp-OfflineBoltIcon {
- background-image: var(--jp-icon-offline-bolt);
-}
-.jp-PaletteIcon {
- background-image: var(--jp-icon-palette);
-}
-.jp-PasteIcon {
- background-image: var(--jp-icon-paste);
-}
-.jp-PdfIcon {
- background-image: var(--jp-icon-pdf);
-}
-.jp-PythonIcon {
- background-image: var(--jp-icon-python);
-}
-.jp-RKernelIcon {
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-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
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-/**
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-#tab-manager
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-/*-----------------------------------------------------------------------------
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-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
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-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2017, Jupyter Development Team.
-|
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-
-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2016, Jupyter Development Team.
-|
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-|----------------------------------------------------------------------------*/
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-:root {
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- ); /* leave 28px for content */
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-.jp-Toolbar {
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-/* Toolbar buttons */
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-/* This is the div we use to wrap the react component into a Widget */
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- > .jp-Toolbar {
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-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2017, Jupyter Development Team.
-|
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Copyright (c) 2014-2017, PhosphorJS Contributors
-|
-| Distributed under the terms of the BSD 3-Clause License.
-|
-| The full license is in the file LICENSE, distributed with this software.
-|----------------------------------------------------------------------------*/
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-
-/* <DEPRECATED> */ body.p-mod-override-cursor *, /* </DEPRECATED> */
-body.lm-mod-override-cursor * {
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-/*-----------------------------------------------------------------------------
-| Copyright (c) 2014-2016, Jupyter Development Team.
-|
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
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-.jp-JSONEditor {
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-.jp-JSONEditor-host {
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-.jp-JSONEditor.jp-mod-error .jp-JSONEditor-host {
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-.jp-JSONEditor-commitButton {
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-.jp-JSONEditor-host.jp-mod-focused {
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-.jp-Editor.jp-mod-dropTarget {
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-
-/* BASICS */
-
-.CodeMirror {
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- height: 300px;
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-.CodeMirror-guttermarker { color: black; }
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-/* STOP */
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-.cm-searching {
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-
-/*-----------------------------------------------------------------------------
-| Private CSS variables
-|----------------------------------------------------------------------------*/
-
-:root {
- --jp-private-cell-scrolling-output-offset: 5px;
-}
-
-/*-----------------------------------------------------------------------------
-| Cell
-|----------------------------------------------------------------------------*/
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-/*-----------------------------------------------------------------------------
-| Common input/output
-|----------------------------------------------------------------------------*/
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-.jp-Cell-inputWrapper,
-.jp-Cell-outputWrapper {
- display: flex;
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-}
-
-/* Only input/output areas inside cells */
-.jp-Cell-inputArea,
-.jp-Cell-outputArea {
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-/*-----------------------------------------------------------------------------
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-|----------------------------------------------------------------------------*/
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- */
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-/*-----------------------------------------------------------------------------
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- );
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-/*-----------------------------------------------------------------------------
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-|----------------------------------------------------------------------------*/
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-/*-----------------------------------------------------------------------------
-| MarkdownCell
-|----------------------------------------------------------------------------*/
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-.jp-MarkdownCell:hover .jp-collapseHeadingButton {
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- position: absolute;
- right: 0;
- top: 0;
- bottom: 0;
-}
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Variables
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-
-/*-----------------------------------------------------------------------------
-| Styles
-|----------------------------------------------------------------------------*/
-
-.jp-NotebookPanel-toolbar {
- padding: 2px;
-}
-
-.jp-Toolbar-item.jp-Notebook-toolbarCellType .jp-select-wrapper.jp-mod-focused {
- border: none;
- box-shadow: none;
-}
-
-.jp-Notebook-toolbarCellTypeDropdown select {
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- line-height: 14px;
- border-radius: 0;
- display: block;
-}
-
-.jp-Notebook-toolbarCellTypeDropdown span {
- top: 5px !important;
-}
-
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Private CSS variables
-|----------------------------------------------------------------------------*/
-
-:root {
- --jp-private-notebook-dragImage-width: 304px;
- --jp-private-notebook-dragImage-height: 36px;
- --jp-private-notebook-selected-color: var(--md-blue-400);
- --jp-private-notebook-active-color: var(--md-green-400);
-}
-
-/*-----------------------------------------------------------------------------
-| Imports
-|----------------------------------------------------------------------------*/
-
-/*-----------------------------------------------------------------------------
-| Notebook
-|----------------------------------------------------------------------------*/
-
-.jp-NotebookPanel {
- display: block;
- height: 100%;
-}
-
-.jp-NotebookPanel.jp-Document {
- min-width: 240px;
- min-height: 120px;
-}
-
-.jp-Notebook {
- padding: var(--jp-notebook-padding);
- outline: none;
- overflow: auto;
- background: var(--jp-layout-color0);
-}
-
-.jp-Notebook.jp-mod-scrollPastEnd::after {
- display: block;
- content: '';
- min-height: var(--jp-notebook-scroll-padding);
-}
-
-.jp-MainAreaWidget-ContainStrict .jp-Notebook * {
- contain: strict;
-}
-
-.jp-Notebook-render * {
- contain: none !important;
-}
-
-.jp-Notebook .jp-Cell {
- overflow: visible;
-}
-
-.jp-Notebook .jp-Cell .jp-InputPrompt {
- cursor: move;
- float: left;
-}
-
-/*-----------------------------------------------------------------------------
-| Notebook state related styling
-|
-| The notebook and cells each have states, here are the possibilities:
-|
-| - Notebook
-| - Command
-| - Edit
-| - Cell
-| - None
-| - Active (only one can be active)
-| - Selected (the cells actions are applied to)
-| - Multiselected (when multiple selected, the cursor)
-| - No outputs
-|----------------------------------------------------------------------------*/
-
-/* Command or edit modes */
-
-.jp-Notebook .jp-Cell:not(.jp-mod-active) .jp-InputPrompt {
- opacity: var(--jp-cell-prompt-not-active-opacity);
- color: var(--jp-cell-prompt-not-active-font-color);
-}
-
-.jp-Notebook .jp-Cell:not(.jp-mod-active) .jp-OutputPrompt {
- opacity: var(--jp-cell-prompt-not-active-opacity);
- color: var(--jp-cell-prompt-not-active-font-color);
-}
-
-/* cell is active */
-.jp-Notebook .jp-Cell.jp-mod-active .jp-Collapser {
- background: var(--jp-brand-color1);
-}
-
-/* cell is dirty */
-.jp-Notebook .jp-Cell.jp-mod-dirty .jp-InputPrompt {
- color: var(--jp-warn-color1);
-}
-.jp-Notebook .jp-Cell.jp-mod-dirty .jp-InputPrompt:before {
- color: var(--jp-warn-color1);
- content: '•';
-}
-
-.jp-Notebook .jp-Cell.jp-mod-active.jp-mod-dirty .jp-Collapser {
- background: var(--jp-warn-color1);
-}
-
-/* collapser is hovered */
-.jp-Notebook .jp-Cell .jp-Collapser:hover {
- box-shadow: var(--jp-elevation-z2);
- background: var(--jp-brand-color1);
- opacity: var(--jp-cell-collapser-not-active-hover-opacity);
-}
-
-/* cell is active and collapser is hovered */
-.jp-Notebook .jp-Cell.jp-mod-active .jp-Collapser:hover {
- background: var(--jp-brand-color0);
- opacity: 1;
-}
-
-/* Command mode */
-
-.jp-Notebook.jp-mod-commandMode .jp-Cell.jp-mod-selected {
- background: var(--jp-notebook-multiselected-color);
-}
-
-.jp-Notebook.jp-mod-commandMode
- .jp-Cell.jp-mod-active.jp-mod-selected:not(.jp-mod-multiSelected) {
- background: transparent;
-}
-
-/* Edit mode */
-
-.jp-Notebook.jp-mod-editMode .jp-Cell.jp-mod-active .jp-InputArea-editor {
- border: var(--jp-border-width) solid var(--jp-cell-editor-active-border-color);
- box-shadow: var(--jp-input-box-shadow);
- background-color: var(--jp-cell-editor-active-background);
-}
-
-/*-----------------------------------------------------------------------------
-| Notebook drag and drop
-|----------------------------------------------------------------------------*/
-
-.jp-Notebook-cell.jp-mod-dropSource {
- opacity: 0.5;
-}
-
-.jp-Notebook-cell.jp-mod-dropTarget,
-.jp-Notebook.jp-mod-commandMode
- .jp-Notebook-cell.jp-mod-active.jp-mod-selected.jp-mod-dropTarget {
- border-top-color: var(--jp-private-notebook-selected-color);
- border-top-style: solid;
- border-top-width: 2px;
-}
-
-.jp-dragImage {
- display: block;
- flex-direction: row;
- width: var(--jp-private-notebook-dragImage-width);
- height: var(--jp-private-notebook-dragImage-height);
- border: var(--jp-border-width) solid var(--jp-cell-editor-border-color);
- background: var(--jp-cell-editor-background);
- overflow: visible;
-}
-
-.jp-dragImage-singlePrompt {
- box-shadow: 2px 2px 4px 0px rgba(0, 0, 0, 0.12);
-}
-
-.jp-dragImage .jp-dragImage-content {
- flex: 1 1 auto;
- z-index: 2;
- font-size: var(--jp-code-font-size);
- font-family: var(--jp-code-font-family);
- line-height: var(--jp-code-line-height);
- padding: var(--jp-code-padding);
- border: var(--jp-border-width) solid var(--jp-cell-editor-border-color);
- background: var(--jp-cell-editor-background-color);
- color: var(--jp-content-font-color3);
- text-align: left;
- margin: 4px 4px 4px 0px;
-}
-
-.jp-dragImage .jp-dragImage-prompt {
- flex: 0 0 auto;
- min-width: 36px;
- color: var(--jp-cell-inprompt-font-color);
- padding: var(--jp-code-padding);
- padding-left: 12px;
- font-family: var(--jp-cell-prompt-font-family);
- letter-spacing: var(--jp-cell-prompt-letter-spacing);
- line-height: 1.9;
- font-size: var(--jp-code-font-size);
- border: var(--jp-border-width) solid transparent;
-}
-
-.jp-dragImage-multipleBack {
- z-index: -1;
- position: absolute;
- height: 32px;
- width: 300px;
- top: 8px;
- left: 8px;
- background: var(--jp-layout-color2);
- border: var(--jp-border-width) solid var(--jp-input-border-color);
- box-shadow: 2px 2px 4px 0px rgba(0, 0, 0, 0.12);
-}
-
-/*-----------------------------------------------------------------------------
-| Cell toolbar
-|----------------------------------------------------------------------------*/
-
-.jp-NotebookTools {
- display: block;
- min-width: var(--jp-sidebar-min-width);
- color: var(--jp-ui-font-color1);
- background: var(--jp-layout-color1);
- /* This is needed so that all font sizing of children done in ems is
- * relative to this base size */
- font-size: var(--jp-ui-font-size1);
- overflow: auto;
-}
-
-.jp-NotebookTools-tool {
- padding: 0px 12px 0 12px;
-}
-
-.jp-ActiveCellTool {
- padding: 12px;
- background-color: var(--jp-layout-color1);
- border-top: none !important;
-}
-
-.jp-ActiveCellTool .jp-InputArea-prompt {
- flex: 0 0 auto;
- padding-left: 0px;
-}
-
-.jp-ActiveCellTool .jp-InputArea-editor {
- flex: 1 1 auto;
- background: var(--jp-cell-editor-background);
- border-color: var(--jp-cell-editor-border-color);
-}
-
-.jp-ActiveCellTool .jp-InputArea-editor .CodeMirror {
- background: transparent;
-}
-
-.jp-MetadataEditorTool {
- flex-direction: column;
- padding: 12px 0px 12px 0px;
-}
-
-.jp-RankedPanel > :not(:first-child) {
- margin-top: 12px;
-}
-
-.jp-KeySelector select.jp-mod-styled {
- font-size: var(--jp-ui-font-size1);
- color: var(--jp-ui-font-color0);
- border: var(--jp-border-width) solid var(--jp-border-color1);
-}
-
-.jp-KeySelector label,
-.jp-MetadataEditorTool label {
- line-height: 1.4;
-}
-
-.jp-NotebookTools .jp-select-wrapper {
- margin-top: 4px;
- margin-bottom: 0px;
-}
-
-.jp-NotebookTools .jp-Collapse {
- margin-top: 16px;
-}
-
-/*-----------------------------------------------------------------------------
-| Presentation Mode (.jp-mod-presentationMode)
-|----------------------------------------------------------------------------*/
-
-.jp-mod-presentationMode .jp-Notebook {
- --jp-content-font-size1: var(--jp-content-presentation-font-size1);
- --jp-code-font-size: var(--jp-code-presentation-font-size);
-}
-
-.jp-mod-presentationMode .jp-Notebook .jp-Cell .jp-InputPrompt,
-.jp-mod-presentationMode .jp-Notebook .jp-Cell .jp-OutputPrompt {
- flex: 0 0 110px;
-}
-
-/*-----------------------------------------------------------------------------
-| Placeholder
-|----------------------------------------------------------------------------*/
-
-.jp-Cell-Placeholder {
- padding-left: 55px;
-}
-
-.jp-Cell-Placeholder-wrapper {
- background: #fff;
- border: 1px solid;
- border-color: #e5e6e9 #dfe0e4 #d0d1d5;
- border-radius: 4px;
- -webkit-border-radius: 4px;
- margin: 10px 15px;
-}
-
-.jp-Cell-Placeholder-wrapper-inner {
- padding: 15px;
- position: relative;
-}
-
-.jp-Cell-Placeholder-wrapper-body {
- background-repeat: repeat;
- background-size: 50% auto;
-}
-
-.jp-Cell-Placeholder-wrapper-body div {
- background: #f6f7f8;
- background-image: -webkit-linear-gradient(
- left,
- #f6f7f8 0%,
- #edeef1 20%,
- #f6f7f8 40%,
- #f6f7f8 100%
- );
- background-repeat: no-repeat;
- background-size: 800px 104px;
- height: 104px;
- position: relative;
-}
-
-.jp-Cell-Placeholder-wrapper-body div {
- position: absolute;
- right: 15px;
- left: 15px;
- top: 15px;
-}
-
-div.jp-Cell-Placeholder-h1 {
- top: 20px;
- height: 20px;
- left: 15px;
- width: 150px;
-}
-
-div.jp-Cell-Placeholder-h2 {
- left: 15px;
- top: 50px;
- height: 10px;
- width: 100px;
-}
-
-div.jp-Cell-Placeholder-content-1,
-div.jp-Cell-Placeholder-content-2,
-div.jp-Cell-Placeholder-content-3 {
- left: 15px;
- right: 15px;
- height: 10px;
-}
-
-div.jp-Cell-Placeholder-content-1 {
- top: 100px;
-}
-
-div.jp-Cell-Placeholder-content-2 {
- top: 120px;
-}
-
-div.jp-Cell-Placeholder-content-3 {
- top: 140px;
-}
-
-</style>
-
- <style type="text/css">
-/*-----------------------------------------------------------------------------
-| Copyright (c) Jupyter Development Team.
-| Distributed under the terms of the Modified BSD License.
-|----------------------------------------------------------------------------*/
-
-/*
-The following CSS variables define the main, public API for styling JupyterLab.
-These variables should be used by all plugins wherever possible. In other
-words, plugins should not define custom colors, sizes, etc unless absolutely
-necessary. This enables users to change the visual theme of JupyterLab
-by changing these variables.
-
-Many variables appear in an ordered sequence (0,1,2,3). These sequences
-are designed to work well together, so for example, `--jp-border-color1` should
-be used with `--jp-layout-color1`. The numbers have the following meanings:
-
-* 0: super-primary, reserved for special emphasis
-* 1: primary, most important under normal situations
-* 2: secondary, next most important under normal situations
-* 3: tertiary, next most important under normal situations
-
-Throughout JupyterLab, we are mostly following principles from Google's
-Material Design when selecting colors. We are not, however, following
-all of MD as it is not optimized for dense, information rich UIs.
-*/
-
-:root {
- /* Elevation
- *
- * We style box-shadows using Material Design's idea of elevation. These particular numbers are taken from here:
- *
- * https://github.com/material-components/material-components-web
- * https://material-components-web.appspot.com/elevation.html
- */
-
- --jp-shadow-base-lightness: 0;
- --jp-shadow-umbra-color: rgba(
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- 0.2
- );
- --jp-shadow-penumbra-color: rgba(
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- 0.14
- );
- --jp-shadow-ambient-color: rgba(
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- var(--jp-shadow-base-lightness),
- 0.12
- );
- --jp-elevation-z0: none;
- --jp-elevation-z1: 0px 2px 1px -1px var(--jp-shadow-umbra-color),
- 0px 1px 1px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 3px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z2: 0px 3px 1px -2px var(--jp-shadow-umbra-color),
- 0px 2px 2px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 5px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z4: 0px 2px 4px -1px var(--jp-shadow-umbra-color),
- 0px 4px 5px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 10px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z6: 0px 3px 5px -1px var(--jp-shadow-umbra-color),
- 0px 6px 10px 0px var(--jp-shadow-penumbra-color),
- 0px 1px 18px 0px var(--jp-shadow-ambient-color);
- --jp-elevation-z8: 0px 5px 5px -3px var(--jp-shadow-umbra-color),
- 0px 8px 10px 1px var(--jp-shadow-penumbra-color),
- 0px 3px 14px 2px var(--jp-shadow-ambient-color);
- --jp-elevation-z12: 0px 7px 8px -4px var(--jp-shadow-umbra-color),
- 0px 12px 17px 2px var(--jp-shadow-penumbra-color),
- 0px 5px 22px 4px var(--jp-shadow-ambient-color);
- --jp-elevation-z16: 0px 8px 10px -5px var(--jp-shadow-umbra-color),
- 0px 16px 24px 2px var(--jp-shadow-penumbra-color),
- 0px 6px 30px 5px var(--jp-shadow-ambient-color);
- --jp-elevation-z20: 0px 10px 13px -6px var(--jp-shadow-umbra-color),
- 0px 20px 31px 3px var(--jp-shadow-penumbra-color),
- 0px 8px 38px 7px var(--jp-shadow-ambient-color);
- --jp-elevation-z24: 0px 11px 15px -7px var(--jp-shadow-umbra-color),
- 0px 24px 38px 3px var(--jp-shadow-penumbra-color),
- 0px 9px 46px 8px var(--jp-shadow-ambient-color);
-
- /* Borders
- *
- * The following variables, specify the visual styling of borders in JupyterLab.
- */
-
- --jp-border-width: 1px;
- --jp-border-color0: var(--md-grey-400);
- --jp-border-color1: var(--md-grey-400);
- --jp-border-color2: var(--md-grey-300);
- --jp-border-color3: var(--md-grey-200);
- --jp-border-radius: 2px;
-
- /* UI Fonts
- *
- * The UI font CSS variables are used for the typography all of the JupyterLab
- * user interface elements that are not directly user generated content.
- *
- * The font sizing here is done assuming that the body font size of --jp-ui-font-size1
- * is applied to a parent element. When children elements, such as headings, are sized
- * in em all things will be computed relative to that body size.
- */
-
- --jp-ui-font-scale-factor: 1.2;
- --jp-ui-font-size0: 0.83333em;
- --jp-ui-font-size1: 13px; /* Base font size */
- --jp-ui-font-size2: 1.2em;
- --jp-ui-font-size3: 1.44em;
-
- --jp-ui-font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Helvetica,
- Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol';
-
- /*
- * Use these font colors against the corresponding main layout colors.
- * In a light theme, these go from dark to light.
- */
-
- /* Defaults use Material Design specification */
- --jp-ui-font-color0: rgba(0, 0, 0, 1);
- --jp-ui-font-color1: rgba(0, 0, 0, 0.87);
- --jp-ui-font-color2: rgba(0, 0, 0, 0.54);
- --jp-ui-font-color3: rgba(0, 0, 0, 0.38);
-
- /*
- * Use these against the brand/accent/warn/error colors.
- * These will typically go from light to darker, in both a dark and light theme.
- */
-
- --jp-ui-inverse-font-color0: rgba(255, 255, 255, 1);
- --jp-ui-inverse-font-color1: rgba(255, 255, 255, 1);
- --jp-ui-inverse-font-color2: rgba(255, 255, 255, 0.7);
- --jp-ui-inverse-font-color3: rgba(255, 255, 255, 0.5);
-
- /* Content Fonts
- *
- * Content font variables are used for typography of user generated content.
- *
- * The font sizing here is done assuming that the body font size of --jp-content-font-size1
- * is applied to a parent element. When children elements, such as headings, are sized
- * in em all things will be computed relative to that body size.
- */
-
- --jp-content-line-height: 1.6;
- --jp-content-font-scale-factor: 1.2;
- --jp-content-font-size0: 0.83333em;
- --jp-content-font-size1: 14px; /* Base font size */
- --jp-content-font-size2: 1.2em;
- --jp-content-font-size3: 1.44em;
- --jp-content-font-size4: 1.728em;
- --jp-content-font-size5: 2.0736em;
-
- /* This gives a magnification of about 125% in presentation mode over normal. */
- --jp-content-presentation-font-size1: 17px;
-
- --jp-content-heading-line-height: 1;
- --jp-content-heading-margin-top: 1.2em;
- --jp-content-heading-margin-bottom: 0.8em;
- --jp-content-heading-font-weight: 500;
-
- /* Defaults use Material Design specification */
- --jp-content-font-color0: rgba(0, 0, 0, 1);
- --jp-content-font-color1: rgba(0, 0, 0, 0.87);
- --jp-content-font-color2: rgba(0, 0, 0, 0.54);
- --jp-content-font-color3: rgba(0, 0, 0, 0.38);
-
- --jp-content-link-color: var(--md-blue-700);
-
- --jp-content-font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI',
- Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji',
- 'Segoe UI Symbol';
-
- /*
- * Code Fonts
- *
- * Code font variables are used for typography of code and other monospaces content.
- */
-
- --jp-code-font-size: 13px;
- --jp-code-line-height: 1.3077; /* 17px for 13px base */
- --jp-code-padding: 5px; /* 5px for 13px base, codemirror highlighting needs integer px value */
- --jp-code-font-family-default: Menlo, Consolas, 'DejaVu Sans Mono', monospace;
- --jp-code-font-family: var(--jp-code-font-family-default);
-
- /* This gives a magnification of about 125% in presentation mode over normal. */
- --jp-code-presentation-font-size: 16px;
-
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- );
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-/* CSS rules under this comment should not be required anymore after we move to the JupyterLab 4.0 CSS */
-
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-.jp-CodeCell.jp-mod-outputsScrolled .jp-OutputArea-prompt {
- min-width: calc(
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- <!-- End of mathjax configuration --></head>
-<body class="jp-Notebook" data-jp-theme-light="true" data-jp-theme-name="JupyterLab Light">
-<div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">requests</span>
-<span class="kn">import</span> <span class="nn">datetime</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
-<span class="kn">import</span> <span class="nn">xml.dom.minidom</span>
-<span class="kn">from</span> <span class="nn">ost</span> <span class="kn">import</span> <span class="n">io</span>
-
-<span class="c1"># from Tara code</span>
-<span class="k">def</span> <span class="nf">_get_sequence</span><span class="p">(</span><span class="n">chn</span><span class="p">):</span>
- <span class="sd">"""Get the sequence out of an OST chain."""</span>
- <span class="c1"># initialise</span>
- <span class="n">lst_rn</span> <span class="o">=</span> <span class="n">chn</span><span class="o">.</span><span class="n">residues</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">number</span><span class="o">.</span><span class="n">num</span>
- <span class="n">idx</span> <span class="o">=</span> <span class="mi">1</span>
- <span class="n">sqe</span> <span class="o">=</span> <span class="n">chn</span><span class="o">.</span><span class="n">residues</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">one_letter_code</span>
- <span class="k">if</span> <span class="n">lst_rn</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
- <span class="n">sqe</span> <span class="o">=</span> <span class="s2">"-"</span>
- <span class="n">idx</span> <span class="o">=</span> <span class="mi">0</span>
-
- <span class="k">for</span> <span class="n">res</span> <span class="ow">in</span> <span class="n">chn</span><span class="o">.</span><span class="n">residues</span><span class="p">[</span><span class="n">idx</span><span class="p">:]:</span>
- <span class="n">lst_rn</span> <span class="o">+=</span> <span class="mi">1</span>
- <span class="k">while</span> <span class="n">lst_rn</span> <span class="o">!=</span> <span class="n">res</span><span class="o">.</span><span class="n">number</span><span class="o">.</span><span class="n">num</span><span class="p">:</span>
- <span class="n">sqe</span> <span class="o">+=</span> <span class="s2">"-"</span>
- <span class="n">lst_rn</span> <span class="o">+=</span> <span class="mi">1</span>
- <span class="n">sqe</span> <span class="o">+=</span> <span class="n">res</span><span class="o">.</span><span class="n">one_letter_code</span>
-
- <span class="k">return</span> <span class="n">sqe</span>
-
-<span class="k">def</span> <span class="nf">_check_sequence</span><span class="p">(</span><span class="n">up_ac</span><span class="p">,</span> <span class="n">sequence</span><span class="p">):</span>
- <span class="sd">"""Verify sequence to only contain standard olc."""</span>
- <span class="k">for</span> <span class="n">res</span> <span class="ow">in</span> <span class="n">sequence</span><span class="p">:</span>
- <span class="k">if</span> <span class="n">res</span> <span class="ow">not</span> <span class="ow">in</span> <span class="s2">"ACDEFGHIKLMNPQRSTVWY"</span><span class="p">:</span>
- <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span>
- <span class="s2">"Non-standard aa found in UniProtKB sequence "</span>
- <span class="o">+</span> <span class="sa">f</span><span class="s2">"for entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">': </span><span class="si">{</span><span class="n">res</span><span class="si">}</span><span class="s2">"</span>
- <span class="p">)</span>
-
-<span class="k">def</span> <span class="nf">_fetch_upkb_entry</span><span class="p">(</span><span class="n">up_ac</span><span class="p">):</span>
- <span class="sd">"""Fetch data for an UniProtKB entry."""</span>
- <span class="c1"># This is a simple parser for UniProtKB txt format, instead of breaking it up</span>
- <span class="c1"># into multiple functions, we just allow many many branches & statements,</span>
- <span class="c1"># here.</span>
- <span class="c1"># pylint: disable=too-many-branches,too-many-statements</span>
- <span class="n">data</span> <span class="o">=</span> <span class="p">{}</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_organism"</span><span class="p">]</span> <span class="o">=</span> <span class="s2">""</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]</span> <span class="o">=</span> <span class="s2">""</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_ac"</span><span class="p">]</span> <span class="o">=</span> <span class="n">up_ac</span>
- <span class="n">rspns</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="sa">f</span><span class="s2">"https://www.uniprot.org/uniprot/</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">.txt"</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">rspns</span><span class="o">.</span><span class="n">iter_lines</span><span class="p">(</span><span class="n">decode_unicode</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
- <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"ID "</span><span class="p">):</span>
- <span class="n">sline</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sline</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">5</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Unusual UniProtKB ID line found:</span><span class="se">\n</span><span class="s2">'</span><span class="si">{</span><span class="n">line</span><span class="si">}</span><span class="s2">'"</span><span class="p">)</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_id"</span><span class="p">]</span> <span class="o">=</span> <span class="n">sline</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"OX NCBI_TaxID="</span><span class="p">):</span>
- <span class="c1"># Following strictly the UniProtKB format: 'OX NCBI_TaxID=<ID>;'</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_ncbi_taxid"</span><span class="p">]</span> <span class="o">=</span> <span class="n">line</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="s2">"OX NCBI_TaxID="</span><span class="p">)</span> <span class="p">:</span> <span class="o">-</span><span class="mi">1</span><span class="p">]</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_ncbi_taxid"</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s2">"up_ncbi_taxid"</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">"{"</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"OS "</span><span class="p">):</span>
- <span class="k">if</span> <span class="n">line</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s2">"."</span><span class="p">:</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_organism"</span><span class="p">]</span> <span class="o">+=</span> <span class="n">line</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="s2">"OS "</span><span class="p">)</span> <span class="p">:</span> <span class="o">-</span><span class="mi">1</span><span class="p">]</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_organism"</span><span class="p">]</span> <span class="o">+=</span> <span class="n">line</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="s2">"OS "</span><span class="p">)</span> <span class="p">:</span> <span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="s2">" "</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"SQ "</span><span class="p">):</span>
- <span class="n">sline</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sline</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">8</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Unusual UniProtKB SQ line found:</span><span class="se">\n</span><span class="s2">'</span><span class="si">{</span><span class="n">line</span><span class="si">}</span><span class="s2">'"</span><span class="p">)</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_seqlen"</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">sline</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_crc64"</span><span class="p">]</span> <span class="o">=</span> <span class="n">sline</span><span class="p">[</span><span class="mi">6</span><span class="p">]</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">" "</span><span class="p">):</span>
- <span class="n">sline</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sline</span><span class="p">)</span> <span class="o">></span> <span class="mi">6</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span>
- <span class="s2">"Unusual UniProtKB sequence data line "</span>
- <span class="o">+</span> <span class="sa">f</span><span class="s2">"found:</span><span class="se">\n</span><span class="s2">'</span><span class="si">{</span><span class="n">line</span><span class="si">}</span><span class="s2">'"</span>
- <span class="p">)</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]</span> <span class="o">+=</span> <span class="s2">""</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">sline</span><span class="p">)</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"RP "</span><span class="p">):</span>
- <span class="k">if</span> <span class="s2">"ISOFORM"</span> <span class="ow">in</span> <span class="n">line</span><span class="o">.</span><span class="n">upper</span><span class="p">():</span>
- <span class="ne">RuntimeError</span><span class="p">(</span>
- <span class="sa">f</span><span class="s2">"First ISOFORM found for '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">', needs "</span> <span class="o">+</span> <span class="s2">"handling."</span>
- <span class="p">)</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"DT "</span><span class="p">):</span>
- <span class="c1"># 2012-10-03</span>
- <span class="n">dt_flds</span> <span class="o">=</span> <span class="n">line</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="s2">"DT "</span><span class="p">)</span> <span class="p">:]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">", "</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">dt_flds</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"SEQUENCE VERSION "</span><span class="p">):</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_last_mod"</span><span class="p">]</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span>
- <span class="n">dt_flds</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s2">"</span><span class="si">%d</span><span class="s2">-%b-%Y"</span>
- <span class="p">)</span>
- <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"GN Name="</span><span class="p">):</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_gn"</span><span class="p">]</span> <span class="o">=</span> <span class="n">line</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="s2">"GN Name="</span><span class="p">)</span> <span class="p">:]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">";"</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_gn"</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s2">"up_gn"</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">"{"</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
-
- <span class="c1"># we have not seen isoforms in the data set, yet, so we just set them to '.'</span>
- <span class="n">data</span><span class="p">[</span><span class="s2">"up_isoform"</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
-
- <span class="k">if</span> <span class="s2">"up_gn"</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No gene name found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="k">if</span> <span class="s2">"up_last_mod"</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No sequence version found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="k">if</span> <span class="s2">"up_crc64"</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No CRC64 value found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No sequence found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="c1"># check that sequence length and CRC64 is correct</span>
- <span class="k">if</span> <span class="n">data</span><span class="p">[</span><span class="s2">"up_seqlen"</span><span class="p">]</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]):</span>
- <span class="n">_abort_msg</span><span class="p">(</span>
- <span class="s2">"Sequence length of SQ line and sequence data differ for "</span>
- <span class="o">+</span> <span class="sa">f</span><span class="s2">"UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">': </span><span class="si">{</span><span class="n">data</span><span class="p">[</span><span class="s1">'up_seqlen'</span><span class="p">]</span><span class="si">}</span><span class="s2"> != "</span>
- <span class="o">+</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="s1">'up_sequence'</span><span class="p">])</span><span class="si">}</span><span class="s2">"</span>
- <span class="p">)</span>
- <span class="n">_check_sequence</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="s2">"up_ac"</span><span class="p">],</span> <span class="n">data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">])</span>
-
- <span class="k">if</span> <span class="s2">"up_id"</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No ID found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="k">if</span> <span class="s2">"up_ncbi_taxid"</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No NCBI taxonomy ID found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="s2">"up_organism"</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
- <span class="n">_abort_msg</span><span class="p">(</span><span class="sa">f</span><span class="s2">"No organism species found for UniProtKB entry '</span><span class="si">{</span><span class="n">up_ac</span><span class="si">}</span><span class="s2">'."</span><span class="p">)</span>
-
- <span class="k">return</span> <span class="n">data</span>
-
-<span class="k">def</span> <span class="nf">_get_upkb_for_sequence</span><span class="p">(</span><span class="n">sqe</span><span class="p">,</span> <span class="n">up_ac</span><span class="p">):</span>
- <span class="sd">"""Get UniProtKB entry data for given sequence."""</span>
- <span class="n">up_data</span> <span class="o">=</span> <span class="n">_fetch_upkb_entry</span><span class="p">(</span><span class="n">up_ac</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">sqe</span> <span class="o">!=</span> <span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]:</span>
- <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span>
- <span class="sa">f</span><span class="s2">"Sequences not equal from file: </span><span class="si">{</span><span class="n">sqe</span><span class="si">}</span><span class="s2">, from UniProtKB: "</span>
- <span class="o">+</span> <span class="sa">f</span><span class="s2">"</span><span class="si">{</span><span class="n">up_data</span><span class="p">[</span><span class="s1">'up_sequence'</span><span class="p">]</span><span class="si">}</span><span class="s2">"</span>
- <span class="p">)</span>
-
- <span class="k">return</span> <span class="n">up_data</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [2]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">_get_ncbi_sequence</span><span class="p">(</span><span class="n">ncbi_ac</span><span class="p">):</span>
- <span class="sd">"""Fetch OST sequence object from NCBI web service."""</span>
- <span class="c1"># src: https://www.ncbi.nlm.nih.gov/books/NBK25500/#_chapter1_Downloading_Full_Records_</span>
- <span class="n">rspns</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="sa">f</span><span class="s2">"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/"</span> \
- <span class="sa">f</span><span class="s2">"efetch.fcgi?db=protein&id=</span><span class="si">{</span><span class="n">ncbi_ac</span><span class="si">}</span><span class="s2">"</span> \
- <span class="sa">f</span><span class="s2">"&rettype=fasta&retmode=text"</span><span class="p">)</span>
- <span class="k">return</span> <span class="n">io</span><span class="o">.</span><span class="n">SequenceFromString</span><span class="p">(</span><span class="n">rspns</span><span class="o">.</span><span class="n">text</span><span class="p">,</span> <span class="s2">"fasta"</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [3]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># s = _get_ncbi_sequence("CAD2068351.1")</span>
-<span class="c1"># up_data = _fetch_upkb_entry("A0A485PQD1")</span>
-<span class="c1"># print(s.name, s, len(s), up_data["up_sequence"] == str(s))</span>
-<span class="c1"># up_data</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [5]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check USDA data</span>
-<span class="n">metadata_file</span> <span class="o">=</span> <span class="s2">"./InputFiles/ASFV-G_proteome_accessions.csv"</span>
-<span class="n">pdb_dir</span> <span class="o">=</span> <span class="s2">"./InputFiles/AlphaFold-RENAME"</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [6]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">metadata</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">metadata_file</span><span class="p">)</span>
-<span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">Protein</span><span class="p">))</span> <span class="o">==</span> <span class="n">metadata</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-<span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="p">[</span><span class="s2">"Associated PDB"</span><span class="p">]))</span> <span class="o">==</span> <span class="n">metadata</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-<span class="n">metadata</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
-
-
-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
-
-
- <div class="jp-OutputPrompt jp-OutputArea-prompt">Out[6]:</div>
-
-
-
-<div class="jp-RenderedHTMLCommon jp-RenderedHTML jp-OutputArea-output jp-OutputArea-executeResult" data-mime-type="text/html">
-<div>
-<style scoped>
- .dataframe tbody tr th:only-of-type {
- vertical-align: middle;
- }
-
- .dataframe tbody tr th {
- vertical-align: top;
- }
-
- .dataframe thead th {
- text-align: right;
- }
-</style>
-<table border="1" class="dataframe">
- <thead>
- <tr style="text-align: right;">
- <th></th>
- <th>Protein</th>
- <th>Associated PDB</th>
- <th>NCBI_Accession</th>
- <th>UniProt_ID</th>
- <th>_struct.title</th>
- <th>_struct.pdbx_model_detail</th>
- <th>ranking debugg model ID</th>
- <th>notes</th>
- </tr>
- </thead>
- <tbody>
- <tr>
- <th>0</th>
- <td>285L</td>
- <td>285L.pdb</td>
- <td>CAD2068351.1</td>
- <td>A0A485PQD1</td>
- <td>ASFV-G 285L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_1_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>1</th>
- <td>A104R</td>
- <td>A104R.pdb</td>
- <td>CAD2068395.1</td>
- <td>A0A0A1E0L7</td>
- <td>ASFV-G A104R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>2</th>
- <td>A118R</td>
- <td>A118R.pdb</td>
- <td>CAD2068397.1</td>
- <td>A0A2X0RVA9</td>
- <td>ASFV-G A118R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_1_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>3</th>
- <td>A137R</td>
- <td>A137R.pdb</td>
- <td>CAD2068404.1</td>
- <td>A0A2X0THQ0</td>
- <td>ASFV-G A137R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>4</th>
- <td>A151R</td>
- <td>A151R.pdb</td>
- <td>CAD2068398.1</td>
- <td>A0A2X0TC55</td>
- <td>ASFV-G A151R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>...</th>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- </tr>
- <tr>
- <th>192</th>
- <td>QP509L</td>
- <td>QP509L.pdb</td>
- <td>CAD2068484.1</td>
- <td>A0A2X0THX2</td>
- <td>ASFV-G QP509L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>NaN</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>193</th>
- <td>R298L</td>
- <td>R298L.pdb</td>
- <td>CAD2068482.1</td>
- <td>A0A2X0SE42</td>
- <td>ASFV-G R298L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>194</th>
- <td>S183L</td>
- <td>S183L.pdb</td>
- <td>CAD2068472.1</td>
- <td>A0A2X0SE34</td>
- <td>ASFV-G S183L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>195</th>
- <td>S273R</td>
- <td>S273R.pdb</td>
- <td>CAD2068473.1</td>
- <td>A0A2X0TKM5</td>
- <td>ASFV-G S273R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- </tr>
- <tr>
- <th>196</th>
- <td>X69R</td>
- <td>X69R.pdb</td>
- <td>CAD2068372.1</td>
- <td>A0A2X0TKC7</td>
- <td>ASFV-G X69R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- </tr>
- </tbody>
-</table>
-<p>197 rows × 8 columns</p>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
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-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [66]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">pdb_files</span> <span class="o">=</span> <span class="p">[</span><span class="n">f</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">listdir</span><span class="p">(</span><span class="n">pdb_dir</span><span class="p">))</span> <span class="k">if</span> <span class="n">f</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">".pdb"</span><span class="p">)]</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
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-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
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-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [67]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check names</span>
-<span class="n">pdb_file_split</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">f</span><span class="p">)</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">pdb_files</span><span class="p">]</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [68]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># CHECK THAT PDB FILES MATCH EXISTING ONES</span>
-<span class="c1"># -> extra QP509L-unrelaxed expected</span>
-<span class="n">tstp</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">pdb_files</span><span class="p">)</span>
-<span class="n">tstm</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="p">[</span><span class="s2">"Associated PDB"</span><span class="p">])</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"ONLY AS PDB:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">tstp</span> <span class="o">-</span> <span class="n">tstm</span><span class="p">))</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"ONLY IN METADATA:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">tstm</span> <span class="o">-</span> <span class="n">tstp</span><span class="p">))</span>
-</pre></div>
-
- </div>
-</div>
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-
-
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-<pre>ONLY AS PDB: ['QP509L-unrelaxed.pdb']
-ONLY IN METADATA: []
-</pre>
-</div>
-</div>
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-</div>
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-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
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-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [70]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># CHECK THAT FILE NAMES MATCH PROTEIN NAMES</span>
-<span class="n">tstp</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">fs</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">fs</span> <span class="ow">in</span> <span class="n">pdb_file_split</span><span class="p">)</span>
-<span class="n">tstm</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">Protein</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"ONLY AS PDB:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">tstp</span> <span class="o">-</span> <span class="n">tstm</span><span class="p">))</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"ONLY IN METADATA:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">tstm</span> <span class="o">-</span> <span class="n">tstp</span><span class="p">))</span>
-</pre></div>
-
- </div>
-</div>
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-
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-<div class="jp-OutputArea-child">
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-
-
-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>ONLY AS PDB: ['QP509L-unrelaxed']
-ONLY IN METADATA: []
-</pre>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [14]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># can use either Protein or PDB name as index</span>
-<span class="n">metadata</span> <span class="o">=</span> <span class="n">metadata</span><span class="o">.</span><span class="n">set_index</span><span class="p">(</span><span class="s2">"Protein"</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
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-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
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-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [15]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># NOTE: stupid space there...</span>
-<span class="n">metadata</span><span class="p">[</span><span class="n">metadata</span><span class="p">[</span><span class="s2">"_struct.title "</span><span class="p">]</span><span class="o">.</span><span class="n">isna</span><span class="p">()]</span>
-</pre></div>
-
- </div>
-</div>
-</div>
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-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
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- <div class="jp-OutputPrompt jp-OutputArea-prompt">Out[15]:</div>
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-<div>
-<style scoped>
- .dataframe tbody tr th:only-of-type {
- vertical-align: middle;
- }
-
- .dataframe tbody tr th {
- vertical-align: top;
- }
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- .dataframe thead th {
- text-align: right;
- }
-</style>
-<table border="1" class="dataframe">
- <thead>
- <tr style="text-align: right;">
- <th></th>
- <th>Associated PDB</th>
- <th>NCBI_Accession</th>
- <th>UniProt_ID</th>
- <th>_struct.title</th>
- <th>_struct.pdbx_model_detail</th>
- <th>ranking debugg model ID</th>
- <th>notes</th>
- </tr>
- <tr>
- <th>Protein</th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- </tr>
- </thead>
- <tbody>
- </tbody>
-</table>
-</div>
-</div>
-
-</div>
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-</div>
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-</div>
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-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
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-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [16]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">metadata</span><span class="p">[</span><span class="n">metadata</span><span class="p">[</span><span class="s2">"_struct.pdbx_model_detail"</span><span class="p">]</span><span class="o">.</span><span class="n">isna</span><span class="p">()]</span>
-</pre></div>
-
- </div>
-</div>
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-<div class="jp-Cell-outputWrapper">
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-<div class="jp-OutputArea-child">
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- <div class="jp-OutputPrompt jp-OutputArea-prompt">Out[16]:</div>
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-<div class="jp-RenderedHTMLCommon jp-RenderedHTML jp-OutputArea-output jp-OutputArea-executeResult" data-mime-type="text/html">
-<div>
-<style scoped>
- .dataframe tbody tr th:only-of-type {
- vertical-align: middle;
- }
-
- .dataframe tbody tr th {
- vertical-align: top;
- }
-
- .dataframe thead th {
- text-align: right;
- }
-</style>
-<table border="1" class="dataframe">
- <thead>
- <tr style="text-align: right;">
- <th></th>
- <th>Associated PDB</th>
- <th>NCBI_Accession</th>
- <th>UniProt_ID</th>
- <th>_struct.title</th>
- <th>_struct.pdbx_model_detail</th>
- <th>ranking debugg model ID</th>
- <th>notes</th>
- </tr>
- <tr>
- <th>Protein</th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- </tr>
- </thead>
- <tbody>
- </tbody>
-</table>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [17]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">metadata</span><span class="p">[</span><span class="o">~</span><span class="n">metadata</span><span class="o">.</span><span class="n">notes</span><span class="o">.</span><span class="n">isna</span><span class="p">()]</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
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-<div class="jp-OutputArea jp-Cell-outputArea">
-
-<div class="jp-OutputArea-child">
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-
- <div class="jp-OutputPrompt jp-OutputArea-prompt">Out[17]:</div>
-
-
-
-<div class="jp-RenderedHTMLCommon jp-RenderedHTML jp-OutputArea-output jp-OutputArea-executeResult" data-mime-type="text/html">
-<div>
-<style scoped>
- .dataframe tbody tr th:only-of-type {
- vertical-align: middle;
- }
-
- .dataframe tbody tr th {
- vertical-align: top;
- }
-
- .dataframe thead th {
- text-align: right;
- }
-</style>
-<table border="1" class="dataframe">
- <thead>
- <tr style="text-align: right;">
- <th></th>
- <th>Associated PDB</th>
- <th>NCBI_Accession</th>
- <th>UniProt_ID</th>
- <th>_struct.title</th>
- <th>_struct.pdbx_model_detail</th>
- <th>ranking debugg model ID</th>
- <th>notes</th>
- </tr>
- <tr>
- <th>Protein</th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- </tr>
- </thead>
- <tbody>
- <tr>
- <th>CP2475L_p14</th>
- <td>CP2475L_p14.pdb</td>
- <td>CAD2068454.1</td>
- <td>A0A2X0THU5</td>
- <td>ASFV-G CP2475L p14</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>protein p14 from the pp220 polyprotein encoded...</td>
- </tr>
- <tr>
- <th>CP2475L_p34</th>
- <td>CP2475L_p34.pdb</td>
- <td>CAD2068454.1</td>
- <td>A0A2X0THU5</td>
- <td>ASFV-G CP2475L p34</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>protein p34 from the pp220 polyprotein encoded...</td>
- </tr>
- <tr>
- <th>CP2475L_p37</th>
- <td>CP2475L_p37.pdb</td>
- <td>CAD2068454.1</td>
- <td>A0A2X0THU5</td>
- <td>ASFV-G CP2475L p37</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>protein p37 from the pp220 polyprotein encoded...</td>
- </tr>
- <tr>
- <th>CP2475L_p150</th>
- <td>CP2475L_p150.pdb</td>
- <td>CAD2068454.1</td>
- <td>A0A2X0THU5</td>
- <td>ASFV-G CP2475L p150</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_1_pred_0</td>
- <td>protein p150 from the pp220 polyprotein encode...</td>
- </tr>
- <tr>
- <th>CP2475L_p5</th>
- <td>CP2475L_p5.pdb</td>
- <td>CAD2068454.1</td>
- <td>A0A2X0THU5</td>
- <td>ASFV-G CP2475L p5</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>protein p5 from the pp220 polyprotein encoded ...</td>
- </tr>
- <tr>
- <th>D250R</th>
- <td>D250R.pdb</td>
- <td>CAD2068464.1</td>
- <td>A0A2X0THV3</td>
- <td>ASFV-G D250R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>Mislabled on NCBI and Uniport as D205R</td>
- </tr>
- <tr>
- <th>DP79L</th>
- <td>DP79L.pdb</td>
- <td>CAD2068466.1</td>
- <td>A0A0A1E158</td>
- <td>ASFV-G DP79L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>Mislabled on Uniprot as D79L</td>
- </tr>
- <tr>
- <th>hypothetical_01</th>
- <td>hypothetical_01.pdb</td>
- <td>CAD2068367.1</td>
- <td>A0A485PU43</td>
- <td>ASFV-G hypothetical_01</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_5_pred_0</td>
- <td>labeled as hypothetical on NCBI and Uniprot</td>
- </tr>
- <tr>
- <th>hypothetical_02</th>
- <td>hypothetical_02.pdb</td>
- <td>CAD2068400.1</td>
- <td>A0A485PQI3</td>
- <td>ASFV-G hypothetical_02</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>labeled as hypthetical on NCBI and Uniprot</td>
- </tr>
- <tr>
- <th>hypothetical_03</th>
- <td>hypothetical_03.pdb</td>
- <td>CAD2068512.1</td>
- <td>A0A485PZB7</td>
- <td>ASFV-G hypothetical_03</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>labeled as hypthetical on NCBI and Uniprot</td>
- </tr>
- </tbody>
-</table>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [126]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="k">for</span> <span class="n">mdl_notes</span> <span class="ow">in</span> <span class="n">metadata</span><span class="p">[</span><span class="o">~</span><span class="n">metadata</span><span class="o">.</span><span class="n">notes</span><span class="o">.</span><span class="n">isna</span><span class="p">()]</span><span class="o">.</span><span class="n">notes</span><span class="p">:</span>
- <span class="n">mdl_notes</span> <span class="o">=</span> <span class="n">mdl_notes</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">"hypthetical"</span><span class="p">,</span> <span class="s2">"hypothetical"</span><span class="p">)</span> \
- <span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">"Uniport"</span><span class="p">,</span> <span class="s2">"UniProt"</span><span class="p">)</span> \
- <span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">"Uniprot"</span><span class="p">,</span> <span class="s2">"UniProt"</span><span class="p">)</span> \
- <span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">"Mislabled"</span><span class="p">,</span> <span class="s2">"mislabeled"</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">mdl_notes</span><span class="p">)</span>
-</pre></div>
-
- </div>
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-<pre>protein p14 from the pp220 polyprotein encoded by CP2475L
-protein p34 from the pp220 polyprotein encoded by CP2475L
-protein p37 from the pp220 polyprotein encoded by CP2475L
-protein p150 from the pp220 polyprotein encoded by CP2475L
-protein p5 from the pp220 polyprotein encoded by CP2475L
-mislabeled on NCBI and UniProt as D205R
-mislabeled on UniProt as D79L
-labeled as hypothetical on NCBI and UniProt
-labeled as hypothetical on NCBI and UniProt
-labeled as hypothetical on NCBI and UniProt
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># tst = metadata.loc["hypothetical_03"]</span>
-<span class="c1"># s = _get_ncbi_sequence(tst.NCBI_Accession)</span>
-<span class="c1"># up_data = _fetch_upkb_entry(tst.UniProt_ID)</span>
-<span class="c1"># print(s.name, s, len(s), up_data["up_sequence"] == str(s))</span>
-<span class="c1"># up_data</span>
-
-<span class="c1"># checked all the one above manually and ok as stated (best to add to model_detail!)</span>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># special one...</span>
-<span class="n">metadata</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="s2">"QP509L"</span><span class="p">]</span>
-</pre></div>
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-<pre>Associated PDB QP509L.pdb
-NCBI_Accession CAD2068484.1
-UniProt_ID A0A2X0THX2
-_struct.title ASFV-G QP509L
-_struct.pdbx_model_detail This model was predicted using AlphaFold2
-ranking debugg model ID NaN
-notes NaN
-NCBI_Gi 1886137009
-NCBI_UpdateDate 2020/08/05
-NCBI_TaxId 10497
-Name: QP509L, dtype: object</pre>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="p">[</span><span class="s2">"_struct.pdbx_model_detail"</span><span class="p">])</span>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="p">[</span><span class="s2">"_struct.title "</span><span class="p">]))</span>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check model numbers</span>
-<span class="n">tst</span> <span class="o">=</span> <span class="n">metadata</span><span class="p">[</span><span class="s2">"ranking debugg model ID"</span><span class="p">]</span>
-<span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">mdl_id</span> <span class="ow">in</span> <span class="n">tst</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
- <span class="n">mdl_num</span> <span class="o">=</span> <span class="kc">None</span>
- <span class="k">if</span> <span class="nb">type</span><span class="p">(</span><span class="n">mdl_id</span><span class="p">)</span> <span class="o">==</span> <span class="nb">str</span><span class="p">:</span>
- <span class="n">mdl_id_split</span> <span class="o">=</span> <span class="n">mdl_id</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'_'</span><span class="p">)</span>
- <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">mdl_id_split</span><span class="p">)</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
- <span class="n">mdl_num</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">mdl_id_split</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
- <span class="k">if</span> <span class="ow">not</span> <span class="n">mdl_num</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="n">mdl_id</span><span class="p">)</span>
- <span class="k">elif</span> <span class="n">mdl_num</span> <span class="ow">not</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">6</span><span class="p">):</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="n">mdl_id</span><span class="p">,</span> <span class="n">mdl_num</span><span class="p">)</span>
-</pre></div>
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-<pre>QP509L nan
-</pre>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">_check_subset</span><span class="p">(</span><span class="n">s1</span><span class="p">,</span> <span class="n">s2</span><span class="p">):</span>
- <span class="c1"># check if s2 is uniquely contained in s1</span>
- <span class="c1"># (and if so, returns values for seq_db_align_begin & seq_db_align_end)</span>
- <span class="k">if</span> <span class="n">s1</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="n">s2</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
- <span class="n">align_begin</span> <span class="o">=</span> <span class="n">s1</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="n">s2</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span>
- <span class="n">align_end</span> <span class="o">=</span> <span class="n">align_begin</span> <span class="o">+</span> <span class="nb">len</span><span class="p">(</span><span class="n">s2</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span>
- <span class="k">return</span> <span class="n">align_begin</span><span class="p">,</span> <span class="n">align_end</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="k">return</span> <span class="kc">None</span>
-</pre></div>
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- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check shared ones</span>
-<span class="k">for</span> <span class="n">protein</span><span class="p">,</span> <span class="n">pdb_ext</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">pdb_file_split</span><span class="p">):</span>
- <span class="k">if</span> <span class="n">protein</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">metadata</span><span class="o">.</span><span class="n">index</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="s2">"SKIPPING"</span><span class="p">,</span> <span class="n">protein</span><span class="p">)</span>
- <span class="k">continue</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">row</span> <span class="o">=</span> <span class="n">metadata</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">protein</span><span class="p">]</span>
- <span class="n">pdb_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">pdb_dir</span><span class="p">,</span> <span class="n">protein</span> <span class="o">+</span> <span class="n">pdb_ext</span><span class="p">)</span>
- <span class="n">ent</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">LoadPDB</span><span class="p">(</span><span class="n">pdb_path</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">ent</span><span class="o">.</span><span class="n">chain_count</span> <span class="o">==</span> <span class="mi">1</span>
- <span class="n">sqe</span> <span class="o">=</span> <span class="n">_get_sequence</span><span class="p">(</span><span class="n">ent</span><span class="o">.</span><span class="n">chains</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
- <span class="n">s_ncbi</span> <span class="o">=</span> <span class="n">_get_ncbi_sequence</span><span class="p">(</span><span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">)</span>
- <span class="n">up_data</span> <span class="o">=</span> <span class="n">_fetch_upkb_entry</span><span class="p">(</span><span class="n">row</span><span class="o">.</span><span class="n">UniProt_ID</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]</span> <span class="o">!=</span> <span class="nb">str</span><span class="p">(</span><span class="n">s_ncbi</span><span class="p">):</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="s2">"inconsistent UP/NCBI sequences"</span><span class="p">,</span> <span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">],</span> <span class="nb">str</span><span class="p">(</span><span class="n">s_ncbi</span><span class="p">))</span>
- <span class="k">if</span> <span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">]</span> <span class="o">!=</span> <span class="n">sqe</span><span class="p">:</span>
- <span class="n">tst</span> <span class="o">=</span> <span class="n">_check_subset</span><span class="p">(</span><span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">],</span> <span class="n">sqe</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">tst</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="s2">"PDB seq. is subset of UP"</span><span class="p">,</span> <span class="n">tst</span><span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="s2">"inconsistent UP/PDB sequences"</span><span class="p">,</span> <span class="n">up_data</span><span class="p">[</span><span class="s2">"up_sequence"</span><span class="p">],</span> <span class="n">sqe</span><span class="p">)</span>
- <span class="k">if</span> <span class="nb">str</span><span class="p">(</span><span class="n">s_ncbi</span><span class="p">)</span> <span class="o">!=</span> <span class="n">sqe</span><span class="p">:</span>
- <span class="n">tst</span> <span class="o">=</span> <span class="n">_check_subset</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">s_ncbi</span><span class="p">),</span> <span class="n">sqe</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">tst</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="s2">"PDB seq. is subset of NCBI"</span><span class="p">,</span> <span class="n">tst</span><span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="s2">"inconsistent NCBI/PDB sequences"</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">s_ncbi</span><span class="p">),</span> <span class="n">sqe</span><span class="p">)</span>
-</pre></div>
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-<pre>CP2475L_p14 PDB seq. is subset of UP (369, 522)
-CP2475L_p14 PDB seq. is subset of NCBI (369, 522)
-CP2475L_p150 PDB seq. is subset of UP (894, 2476)
-CP2475L_p150 PDB seq. is subset of NCBI (894, 2476)
-CP2475L_p34 PDB seq. is subset of UP (45, 368)
-CP2475L_p34 PDB seq. is subset of NCBI (45, 368)
-CP2475L_p37 PDB seq. is subset of UP (523, 893)
-CP2475L_p37 PDB seq. is subset of NCBI (523, 893)
-CP2475L_p5 PDB seq. is subset of UP (2, 39)
-CP2475L_p5 PDB seq. is subset of NCBI (2, 39)
-</pre>
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-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check QP509L (take pLDDT from unrelaxed)</span>
-<span class="n">ent_unr</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">LoadPDB</span><span class="p">(</span><span class="s2">"./InputFiles/AlphaFold-RENAME/QP509L-unrelaxed.pdb"</span><span class="p">)</span>
-<span class="n">ent_rel</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">LoadPDB</span><span class="p">(</span><span class="s2">"./InputFiles/AlphaFold-RENAME/QP509L.pdb"</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">a</span><span class="o">.</span><span class="n">occupancy</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">ent_rel</span><span class="o">.</span><span class="n">atoms</span><span class="p">),</span> <span class="nb">set</span><span class="p">(</span><span class="n">a</span><span class="o">.</span><span class="n">b_factor</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">ent_rel</span><span class="o">.</span><span class="n">atoms</span><span class="p">))</span>
-<span class="n">ev_atoms</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">a</span><span class="o">.</span><span class="n">qualified_name</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">ent_rel</span><span class="o">.</span><span class="n">atoms</span><span class="p">)</span>
-<span class="n">eu_atoms</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">a</span><span class="o">.</span><span class="n">qualified_name</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">ent_unr</span><span class="o">.</span><span class="n">atoms</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"IN UNRELAXED:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">eu_atoms</span> <span class="o">-</span> <span class="n">ev_atoms</span><span class="p">))</span>
-<span class="nb">print</span><span class="p">(</span><span class="s2">"IN RELAXED:"</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">ev_atoms</span> <span class="o">-</span> <span class="n">eu_atoms</span><span class="p">))</span>
-</pre></div>
-
- </div>
-</div>
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-<pre>{1.0} {0.0}
-IN UNRELAXED: []
-IN RELAXED: []
-</pre>
-</div>
-</div>
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-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [43]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">_get_ncbi_info</span><span class="p">(</span><span class="n">ncbi_ac</span><span class="p">):</span>
- <span class="sd">"""Fetch dict with info from NCBI web service."""</span>
- <span class="c1"># src: https://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESummary</span>
- <span class="n">rspns</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="sa">f</span><span class="s2">"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/"</span> \
- <span class="sa">f</span><span class="s2">"esummary.fcgi?db=protein&id=</span><span class="si">{</span><span class="n">ncbi_ac</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
- <span class="n">dom</span> <span class="o">=</span> <span class="n">xml</span><span class="o">.</span><span class="n">dom</span><span class="o">.</span><span class="n">minidom</span><span class="o">.</span><span class="n">parseString</span><span class="p">(</span><span class="n">rspns</span><span class="o">.</span><span class="n">text</span><span class="p">)</span>
- <span class="n">docsums</span> <span class="o">=</span> <span class="n">dom</span><span class="o">.</span><span class="n">getElementsByTagName</span><span class="p">(</span><span class="s2">"DocSum"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">docsums</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span>
- <span class="n">docsum</span> <span class="o">=</span> <span class="n">docsums</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
- <span class="n">ncbi_dict</span> <span class="o">=</span> <span class="p">{}</span>
- <span class="k">for</span> <span class="n">cn</span> <span class="ow">in</span> <span class="n">docsum</span><span class="o">.</span><span class="n">childNodes</span><span class="p">:</span>
- <span class="k">if</span> <span class="n">cn</span><span class="o">.</span><span class="n">nodeName</span> <span class="o">==</span> <span class="s2">"Item"</span><span class="p">:</span>
- <span class="n">cn_name</span> <span class="o">=</span> <span class="n">cn</span><span class="o">.</span><span class="n">getAttribute</span><span class="p">(</span><span class="s2">"Name"</span><span class="p">)</span>
- <span class="n">cn_type</span> <span class="o">=</span> <span class="n">cn</span><span class="o">.</span><span class="n">getAttribute</span><span class="p">(</span><span class="s2">"Type"</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">cn</span><span class="o">.</span><span class="n">childNodes</span><span class="p">:</span>
- <span class="n">d</span> <span class="o">=</span> <span class="n">cn</span><span class="o">.</span><span class="n">childNodes</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">data</span>
- <span class="k">if</span> <span class="n">cn_type</span> <span class="o">==</span> <span class="s2">"String"</span><span class="p">:</span>
- <span class="n">ncbi_dict</span><span class="p">[</span><span class="n">cn_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">d</span>
- <span class="k">elif</span> <span class="n">cn_type</span> <span class="o">==</span> <span class="s2">"Integer"</span><span class="p">:</span>
- <span class="n">ncbi_dict</span><span class="p">[</span><span class="n">cn_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Unknown type </span><span class="si">{</span><span class="n">cn_type</span><span class="si">}</span><span class="s2"> for </span><span class="si">{</span><span class="n">ncbi_ac</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">ncbi_dict</span><span class="p">[</span><span class="n">cn_name</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
- <span class="k">return</span> <span class="n">ncbi_dict</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
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-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [44]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># fetch some extra info from NCBI</span>
-<span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">row</span> <span class="ow">in</span> <span class="n">metadata</span><span class="o">.</span><span class="n">iterrows</span><span class="p">():</span>
- <span class="n">ncbi_info</span> <span class="o">=</span> <span class="n">_get_ncbi_info</span><span class="p">(</span><span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">)</span>
- <span class="c1"># Gi is some numerical sequence identifier used internally by NCBI</span>
- <span class="n">metadata</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">idx</span><span class="p">,</span> <span class="s2">"NCBI_Gi"</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"Gi"</span><span class="p">])</span>
- <span class="c1"># UpdateData is to be stored as the version date in ModelCIF</span>
- <span class="n">metadata</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">idx</span><span class="p">,</span> <span class="s2">"NCBI_UpdateDate"</span><span class="p">]</span> <span class="o">=</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"UpdateDate"</span><span class="p">]</span>
- <span class="c1"># TaxId should be same as one from UP</span>
- <span class="n">metadata</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="n">idx</span><span class="p">,</span> <span class="s2">"NCBI_TaxId"</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"TaxId"</span><span class="p">])</span>
- <span class="c1"># Status expected to be live</span>
- <span class="k">if</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"Status"</span><span class="p">]</span> <span class="o">!=</span> <span class="s2">"live"</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">,</span> <span class="s2">"Status"</span><span class="p">,</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"Status"</span><span class="p">])</span>
- <span class="c1"># ReplacedBy expected to be empty</span>
- <span class="k">if</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"ReplacedBy"</span><span class="p">]:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">,</span> <span class="s2">"ReplacedBy"</span><span class="p">,</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"ReplacedBy"</span><span class="p">])</span>
- <span class="c1"># AccessionVersion expected to be NCBI_Accession</span>
- <span class="k">if</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"AccessionVersion"</span><span class="p">]</span> <span class="o">!=</span> <span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="n">row</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">,</span> <span class="s2">"AccessionVersion"</span><span class="p">,</span> <span class="n">ncbi_info</span><span class="p">[</span><span class="s2">"AccessionVersion"</span><span class="p">])</span>
-</pre></div>
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-</div>
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-<div class="jp-InputPrompt jp-InputArea-prompt">In [45]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">metadata</span>
-</pre></div>
-
- </div>
-</div>
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-</div>
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-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
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-<div class="jp-RenderedHTMLCommon jp-RenderedHTML jp-OutputArea-output jp-OutputArea-executeResult" data-mime-type="text/html">
-<div>
-<style scoped>
- .dataframe tbody tr th:only-of-type {
- vertical-align: middle;
- }
-
- .dataframe tbody tr th {
- vertical-align: top;
- }
-
- .dataframe thead th {
- text-align: right;
- }
-</style>
-<table border="1" class="dataframe">
- <thead>
- <tr style="text-align: right;">
- <th></th>
- <th>Associated PDB</th>
- <th>NCBI_Accession</th>
- <th>UniProt_ID</th>
- <th>_struct.title</th>
- <th>_struct.pdbx_model_detail</th>
- <th>ranking debugg model ID</th>
- <th>notes</th>
- <th>NCBI_Gi</th>
- <th>NCBI_UpdateDate</th>
- <th>NCBI_TaxId</th>
- </tr>
- <tr>
- <th>Protein</th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- <th></th>
- </tr>
- </thead>
- <tbody>
- <tr>
- <th>285L</th>
- <td>285L.pdb</td>
- <td>CAD2068351.1</td>
- <td>A0A485PQD1</td>
- <td>ASFV-G 285L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_1_pred_0</td>
- <td>NaN</td>
- <td>1886136876</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>A104R</th>
- <td>A104R.pdb</td>
- <td>CAD2068395.1</td>
- <td>A0A0A1E0L7</td>
- <td>ASFV-G A104R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- <td>1886136920</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>A118R</th>
- <td>A118R.pdb</td>
- <td>CAD2068397.1</td>
- <td>A0A2X0RVA9</td>
- <td>ASFV-G A118R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_1_pred_0</td>
- <td>NaN</td>
- <td>1886136922</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>A137R</th>
- <td>A137R.pdb</td>
- <td>CAD2068404.1</td>
- <td>A0A2X0THQ0</td>
- <td>ASFV-G A137R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>NaN</td>
- <td>1886136929</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>A151R</th>
- <td>A151R.pdb</td>
- <td>CAD2068398.1</td>
- <td>A0A2X0TC55</td>
- <td>ASFV-G A151R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>NaN</td>
- <td>1886136923</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>...</th>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- <td>...</td>
- </tr>
- <tr>
- <th>QP509L</th>
- <td>QP509L.pdb</td>
- <td>CAD2068484.1</td>
- <td>A0A2X0THX2</td>
- <td>ASFV-G QP509L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>NaN</td>
- <td>NaN</td>
- <td>1886137009</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>R298L</th>
- <td>R298L.pdb</td>
- <td>CAD2068482.1</td>
- <td>A0A2X0SE42</td>
- <td>ASFV-G R298L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_3_pred_0</td>
- <td>NaN</td>
- <td>1886137007</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>S183L</th>
- <td>S183L.pdb</td>
- <td>CAD2068472.1</td>
- <td>A0A2X0SE34</td>
- <td>ASFV-G S183L</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_4_pred_0</td>
- <td>NaN</td>
- <td>1886136997</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>S273R</th>
- <td>S273R.pdb</td>
- <td>CAD2068473.1</td>
- <td>A0A2X0TKM5</td>
- <td>ASFV-G S273R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- <td>1886136998</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- <tr>
- <th>X69R</th>
- <td>X69R.pdb</td>
- <td>CAD2068372.1</td>
- <td>A0A2X0TKC7</td>
- <td>ASFV-G X69R</td>
- <td>This model was predicted using AlphaFold2</td>
- <td>model_2_pred_0</td>
- <td>NaN</td>
- <td>1886136897</td>
- <td>2020/08/05</td>
- <td>10497</td>
- </tr>
- </tbody>
-</table>
-<p>197 rows × 10 columns</p>
-</div>
-</div>
-
-</div>
-
-</div>
-
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [46]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">NCBI_Accession</span><span class="p">)),</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">NCBI_TaxId</span><span class="p">),</span> \
-<span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">NCBI_Gi</span><span class="p">)),</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">NCBI_UpdateDate</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
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-<div class="jp-OutputArea jp-Cell-outputArea">
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-<div class="jp-OutputArea-child">
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-
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-<div class="jp-RenderedText jp-OutputArea-output jp-OutputArea-executeResult" data-mime-type="text/plain">
-<pre>(193, {'10497'}, 193, {'2020/08/05'})</pre>
-</div>
-
-</div>
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-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [54]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># all matching tax IDs?</span>
-<span class="k">for</span> <span class="n">protein</span><span class="p">,</span> <span class="n">upac</span> <span class="ow">in</span> <span class="n">metadata</span><span class="o">.</span><span class="n">UniProt_ID</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
- <span class="n">up_info</span> <span class="o">=</span> <span class="n">_fetch_upkb_entry</span><span class="p">(</span><span class="n">upac</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">up_info</span><span class="p">[</span><span class="s2">"up_ncbi_taxid"</span><span class="p">]</span> <span class="o">!=</span> <span class="s2">"10497"</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="n">protein</span><span class="p">,</span> <span class="n">up_info</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
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-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [64]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check PDB files</span>
-<span class="kn">import</span> <span class="nn">ost</span>
-<span class="kn">from</span> <span class="nn">ost</span> <span class="kn">import</span> <span class="n">testutils</span><span class="p">,</span> <span class="n">conop</span>
-<span class="c1"># setup conop</span>
-<span class="n">testutils</span><span class="o">.</span><span class="n">SetDefaultCompoundLib</span><span class="p">()</span>
-<span class="n">io</span><span class="o">.</span><span class="n">profiles</span><span class="p">[</span><span class="s1">'DEFAULT'</span><span class="p">]</span><span class="o">.</span><span class="n">processor</span> <span class="o">=</span> <span class="n">conop</span><span class="o">.</span><span class="n">RuleBasedProcessor</span><span class="p">(</span><span class="n">conop</span><span class="o">.</span><span class="n">GetDefaultLib</span><span class="p">())</span>
-<span class="c1"># check processing</span>
-<span class="n">ost</span><span class="o">.</span><span class="n">PushVerbosityLevel</span><span class="p">(</span><span class="mi">2</span><span class="p">)</span>
-<span class="k">for</span> <span class="n">protein</span><span class="p">,</span> <span class="n">pdb_ext</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">pdb_file_split</span><span class="p">):</span>
- <span class="n">pdb_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">pdb_dir</span><span class="p">,</span> <span class="n">protein</span> <span class="o">+</span> <span class="n">pdb_ext</span><span class="p">)</span>
- <span class="n">ent</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">LoadPDB</span><span class="p">(</span><span class="n">pdb_path</span><span class="p">)</span>
-<span class="n">ost</span><span class="o">.</span><span class="n">PopVerbosityLevel</span><span class="p">()</span>
-<span class="c1"># NOTE: lack of output means that all atom names are ok</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
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-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [84]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">up_info</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
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-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
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-<pre>{'up_organism': 'African swine fever virus (ASFV)',
- 'up_sequence': 'MLLYIVIIVACIISKLVPNEYWAIHLFFIIMIFMVYMYEKLDIHQKSQFWNYTMSGLSGHNVQVTCKCY',
- 'up_ac': 'A0A2X0TKC7',
- 'up_id': 'A0A2X0TKC7_ASF',
- 'up_last_mod': datetime.datetime(2018, 9, 12, 0, 0),
- 'up_gn': 'X69R CDS',
- 'up_ncbi_taxid': '10497',
- 'up_seqlen': 69,
- 'up_crc64': '3B92E4DB323A7A74',
- 'up_isoform': None}</pre>
-</div>
-
-</div>
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-</div>
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-</div>
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-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [85]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">ncbi_info</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
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-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
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-<pre>{'Caption': 'CAD2068372',
- 'Title': 'X69R CDS [African swine fever virus]',
- 'Extra': 'gi|1886136897|emb|CAD2068372.1|[1886136897]',
- 'Gi': 1886136897,
- 'CreateDate': '2010/08/18',
- 'UpdateDate': '2020/08/05',
- 'Flags': 0,
- 'TaxId': 10497,
- 'Length': 69,
- 'Status': 'live',
- 'ReplacedBy': None,
- 'Comment': ' ',
- 'AccessionVersion': 'CAD2068372.1'}</pre>
-</div>
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-</div>
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-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [154]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># check files that were converted (input is std out from run cut to only include "translating...")</span>
-<span class="n">log_lines</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="s2">"./script_out.txt"</span><span class="p">)</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell jp-mod-noOutputs ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [155]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># plenty of assertions in here should also catch any errors...</span>
-<span class="n">idx</span> <span class="o">=</span> <span class="mi">1</span>
-<span class="n">timings</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
-<span class="k">while</span> <span class="n">idx</span> <span class="o"><</span> <span class="nb">len</span><span class="p">(</span><span class="n">log_lines</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span><span class="p">:</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">if</span> <span class="s2">"already done..."</span> <span class="ow">in</span> <span class="n">l</span><span class="p">:</span>
- <span class="n">idx</span> <span class="o">+=</span> <span class="mi">1</span>
- <span class="k">continue</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"translating"</span><span class="p">)</span>
- <span class="n">mdl_title</span> <span class="o">=</span> <span class="n">l</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="s2">"translating"</span><span class="p">):</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">if</span> <span class="n">mdl_title</span> <span class="ow">in</span> <span class="n">timings</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="s2">"WEIRD"</span><span class="p">,</span> <span class="n">l</span><span class="p">)</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"preparing data"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">"s)"</span><span class="p">)</span>
- <span class="n">t_prep</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"generating ModelCIF objects"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">"s)"</span><span class="p">)</span>
- <span class="n">t_cif</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span> <span class="o">+</span> <span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"processing QA scores"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">"s)"</span><span class="p">)</span>
- <span class="n">t_qa</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span> <span class="o">+</span> <span class="mi">4</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"write to disk"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">"s)"</span><span class="p">)</span>
- <span class="n">t_write</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
- <span class="n">l</span> <span class="o">=</span> <span class="n">log_lines</span><span class="p">[</span><span class="n">idx</span> <span class="o">+</span> <span class="mi">5</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">"... done with"</span><span class="p">)</span>
- <span class="k">assert</span> <span class="n">l</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">"s)."</span><span class="p">)</span>
- <span class="n">t_all</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">3</span><span class="p">])</span>
- <span class="n">timings</span><span class="p">[</span><span class="n">mdl_title</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
- <span class="s2">"t_prep"</span><span class="p">:</span> <span class="n">t_prep</span><span class="p">,</span>
- <span class="s2">"t_cif"</span><span class="p">:</span> <span class="n">t_cif</span><span class="p">,</span>
- <span class="s2">"t_qa"</span><span class="p">:</span> <span class="n">t_qa</span><span class="p">,</span>
- <span class="s2">"t_write"</span><span class="p">:</span> <span class="n">t_write</span><span class="p">,</span>
- <span class="s2">"t_all"</span><span class="p">:</span> <span class="n">t_all</span>
- <span class="p">}</span>
- <span class="n">idx</span> <span class="o">+=</span> <span class="mi">6</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [156]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"DONE </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">timings</span><span class="p">)</span><span class="si">}</span><span class="s2"> models"</span><span class="p">)</span>
-<span class="n">mdl_titles</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">metadata</span><span class="o">.</span><span class="n">index</span><span class="p">)</span>
-<span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">timings</span><span class="p">)</span> <span class="o">-</span> <span class="n">mdl_titles</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span>
-<span class="n">missing_ones</span> <span class="o">=</span> <span class="n">mdl_titles</span> <span class="o">-</span> <span class="nb">set</span><span class="p">(</span><span class="n">timings</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"MISSING </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">missing_ones</span><span class="p">)</span><span class="si">}</span><span class="s2"> models"</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
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-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
-</div>
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-<div class="jp-OutputArea jp-Cell-outputArea">
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-<div class="jp-OutputArea-child">
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- <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
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-<div class="jp-RenderedText jp-OutputArea-output" data-mime-type="text/plain">
-<pre>DONE 197 models
-MISSING 0 models
-</pre>
-</div>
-</div>
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-</div>
-
-</div>
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-</div><div class="jp-Cell jp-CodeCell jp-Notebook-cell ">
-<div class="jp-Cell-inputWrapper">
-<div class="jp-Collapser jp-InputCollapser jp-Cell-inputCollapser">
-</div>
-<div class="jp-InputArea jp-Cell-inputArea">
-<div class="jp-InputPrompt jp-InputArea-prompt">In [157]:</div>
-<div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
- <div class="CodeMirror cm-s-jupyter">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">k_parts</span> <span class="o">=</span> <span class="p">[</span><span class="s2">"t_prep"</span><span class="p">,</span> <span class="s2">"t_cif"</span><span class="p">,</span> <span class="s2">"t_qa"</span><span class="p">,</span> <span class="s2">"t_write"</span><span class="p">]</span>
-<span class="n">totals</span> <span class="o">=</span> <span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="nb">sum</span><span class="p">(</span><span class="n">v</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">timings</span><span class="o">.</span><span class="n">values</span><span class="p">())</span> \
- <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">k_parts</span> <span class="o">+</span> <span class="p">[</span><span class="s2">"t_all"</span><span class="p">]}</span>
-<span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"TOTAL TIME SPENT: </span><span class="si">{</span><span class="nb">round</span><span class="p">(</span><span class="n">totals</span><span class="p">[</span><span class="s1">'t_all'</span><span class="p">],</span> <span class="mi">2</span><span class="p">)</span><span class="si">}</span><span class="s2"> s"</span><span class="p">)</span>
-<span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">k_parts</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">"-> </span><span class="si">{</span><span class="n">k</span><span class="si">}</span><span class="s2">: </span><span class="si">{</span><span class="nb">round</span><span class="p">(</span><span class="mi">100</span> <span class="o">*</span> <span class="n">totals</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">/</span> <span class="n">totals</span><span class="p">[</span><span class="s1">'t_all'</span><span class="p">],</span> <span class="mi">1</span><span class="p">)</span><span class="si">}</span><span class="s2">%"</span><span class="p">)</span>
-</pre></div>
-
- </div>
-</div>
-</div>
-</div>
-
-<div class="jp-Cell-outputWrapper">
-<div class="jp-Collapser jp-OutputCollapser jp-Cell-outputCollapser">
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-<pre>TOTAL TIME SPENT: 356.38 s
--> t_prep: 80.5%
--> t_cif: 1.2%
--> t_qa: 0.0%
--> t_write: 17.8%
-</pre>
-</div>
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diff --git a/projects/USDA-ASFVG/tests/test.ipynb b/projects/USDA-ASFVG/tests/test.ipynb
deleted file mode 100644
index 4109e9da9c93379a0e64847cab43e4904ad1106a..0000000000000000000000000000000000000000
--- a/projects/USDA-ASFVG/tests/test.ipynb
+++ /dev/null
@@ -1,1681 +0,0 @@
-{
- "cells": [
- {
- "cell_type": "code",
- "execution_count": 1,
- "id": "ac0e1325",
- "metadata": {},
- "outputs": [],
- "source": [
- "import requests\n",
- "import datetime\n",
- "import os\n",
- "import pandas as pd\n",
- "import xml.dom.minidom\n",
- "from ost import io\n",
- "\n",
- "# from Tara code\n",
- "def _get_sequence(chn):\n",
- " \"\"\"Get the sequence out of an OST chain.\"\"\"\n",
- " # initialise\n",
- " lst_rn = chn.residues[0].number.num\n",
- " idx = 1\n",
- " sqe = chn.residues[0].one_letter_code\n",
- " if lst_rn != 1:\n",
- " sqe = \"-\"\n",
- " idx = 0\n",
- "\n",
- " for res in chn.residues[idx:]:\n",
- " lst_rn += 1\n",
- " while lst_rn != res.number.num:\n",
- " sqe += \"-\"\n",
- " lst_rn += 1\n",
- " sqe += res.one_letter_code\n",
- "\n",
- " return sqe\n",
- "\n",
- "def _check_sequence(up_ac, sequence):\n",
- " \"\"\"Verify sequence to only contain standard olc.\"\"\"\n",
- " for res in sequence:\n",
- " if res not in \"ACDEFGHIKLMNPQRSTVWY\":\n",
- " raise RuntimeError(\n",
- " \"Non-standard aa found in UniProtKB sequence \"\n",
- " + f\"for entry '{up_ac}': {res}\"\n",
- " )\n",
- "\n",
- "def _fetch_upkb_entry(up_ac):\n",
- " \"\"\"Fetch data for an UniProtKB entry.\"\"\"\n",
- " # This is a simple parser for UniProtKB txt format, instead of breaking it up\n",
- " # into multiple functions, we just allow many many branches & statements,\n",
- " # here.\n",
- " # pylint: disable=too-many-branches,too-many-statements\n",
- " data = {}\n",
- " data[\"up_organism\"] = \"\"\n",
- " data[\"up_sequence\"] = \"\"\n",
- " data[\"up_ac\"] = up_ac\n",
- " rspns = requests.get(f\"https://www.uniprot.org/uniprot/{up_ac}.txt\")\n",
- " for line in rspns.iter_lines(decode_unicode=True):\n",
- " if line.startswith(\"ID \"):\n",
- " sline = line.split()\n",
- " if len(sline) != 5:\n",
- " _abort_msg(f\"Unusual UniProtKB ID line found:\\n'{line}'\")\n",
- " data[\"up_id\"] = sline[1]\n",
- " elif line.startswith(\"OX NCBI_TaxID=\"):\n",
- " # Following strictly the UniProtKB format: 'OX NCBI_TaxID=<ID>;'\n",
- " data[\"up_ncbi_taxid\"] = line[len(\"OX NCBI_TaxID=\") : -1]\n",
- " data[\"up_ncbi_taxid\"] = data[\"up_ncbi_taxid\"].split(\"{\")[0].strip()\n",
- " elif line.startswith(\"OS \"):\n",
- " if line[-1] == \".\":\n",
- " data[\"up_organism\"] += line[len(\"OS \") : -1]\n",
- " else:\n",
- " data[\"up_organism\"] += line[len(\"OS \") : -1] + \" \"\n",
- " elif line.startswith(\"SQ \"):\n",
- " sline = line.split()\n",
- " if len(sline) != 8:\n",
- " _abort_msg(f\"Unusual UniProtKB SQ line found:\\n'{line}'\")\n",
- " data[\"up_seqlen\"] = int(sline[2])\n",
- " data[\"up_crc64\"] = sline[6]\n",
- " elif line.startswith(\" \"):\n",
- " sline = line.split()\n",
- " if len(sline) > 6:\n",
- " _abort_msg(\n",
- " \"Unusual UniProtKB sequence data line \"\n",
- " + f\"found:\\n'{line}'\"\n",
- " )\n",
- " data[\"up_sequence\"] += \"\".join(sline)\n",
- " elif line.startswith(\"RP \"):\n",
- " if \"ISOFORM\" in line.upper():\n",
- " RuntimeError(\n",
- " f\"First ISOFORM found for '{up_ac}', needs \" + \"handling.\"\n",
- " )\n",
- " elif line.startswith(\"DT \"):\n",
- " # 2012-10-03\n",
- " dt_flds = line[len(\"DT \") :].split(\", \")\n",
- " if dt_flds[1].upper().startswith(\"SEQUENCE VERSION \"):\n",
- " data[\"up_last_mod\"] = datetime.datetime.strptime(\n",
- " dt_flds[0], \"%d-%b-%Y\"\n",
- " )\n",
- " elif line.startswith(\"GN Name=\"):\n",
- " data[\"up_gn\"] = line[len(\"GN Name=\") :].split(\";\")[0]\n",
- " data[\"up_gn\"] = data[\"up_gn\"].split(\"{\")[0].strip()\n",
- "\n",
- " # we have not seen isoforms in the data set, yet, so we just set them to '.'\n",
- " data[\"up_isoform\"] = None\n",
- "\n",
- " if \"up_gn\" not in data:\n",
- " _abort_msg(f\"No gene name found for UniProtKB entry '{up_ac}'.\")\n",
- " if \"up_last_mod\" not in data:\n",
- " _abort_msg(f\"No sequence version found for UniProtKB entry '{up_ac}'.\")\n",
- " if \"up_crc64\" not in data:\n",
- " _abort_msg(f\"No CRC64 value found for UniProtKB entry '{up_ac}'.\")\n",
- " if len(data[\"up_sequence\"]) == 0:\n",
- " _abort_msg(f\"No sequence found for UniProtKB entry '{up_ac}'.\")\n",
- " # check that sequence length and CRC64 is correct\n",
- " if data[\"up_seqlen\"] != len(data[\"up_sequence\"]):\n",
- " _abort_msg(\n",
- " \"Sequence length of SQ line and sequence data differ for \"\n",
- " + f\"UniProtKB entry '{up_ac}': {data['up_seqlen']} != \"\n",
- " + f\"{len(data['up_sequence'])}\"\n",
- " )\n",
- " _check_sequence(data[\"up_ac\"], data[\"up_sequence\"])\n",
- "\n",
- " if \"up_id\" not in data:\n",
- " _abort_msg(f\"No ID found for UniProtKB entry '{up_ac}'.\")\n",
- " if \"up_ncbi_taxid\" not in data:\n",
- " _abort_msg(f\"No NCBI taxonomy ID found for UniProtKB entry '{up_ac}'.\")\n",
- " if len(data[\"up_organism\"]) == 0:\n",
- " _abort_msg(f\"No organism species found for UniProtKB entry '{up_ac}'.\")\n",
- "\n",
- " return data\n",
- "\n",
- "def _get_upkb_for_sequence(sqe, up_ac):\n",
- " \"\"\"Get UniProtKB entry data for given sequence.\"\"\"\n",
- " up_data = _fetch_upkb_entry(up_ac)\n",
- " if sqe != up_data[\"up_sequence\"]:\n",
- " raise RuntimeError(\n",
- " f\"Sequences not equal from file: {sqe}, from UniProtKB: \"\n",
- " + f\"{up_data['up_sequence']}\"\n",
- " )\n",
- "\n",
- " return up_data"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 2,
- "id": "37bece22",
- "metadata": {},
- "outputs": [],
- "source": [
- "def _get_ncbi_sequence(ncbi_ac):\n",
- " \"\"\"Fetch OST sequence object from NCBI web service.\"\"\"\n",
- " # src: https://www.ncbi.nlm.nih.gov/books/NBK25500/#_chapter1_Downloading_Full_Records_\n",
- " rspns = requests.get(f\"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/\" \\\n",
- " f\"efetch.fcgi?db=protein&id={ncbi_ac}\" \\\n",
- " f\"&rettype=fasta&retmode=text\")\n",
- " return io.SequenceFromString(rspns.text, \"fasta\")"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 3,
- "id": "3f83b12d",
- "metadata": {},
- "outputs": [],
- "source": [
- "# s = _get_ncbi_sequence(\"CAD2068351.1\")\n",
- "# up_data = _fetch_upkb_entry(\"A0A485PQD1\")\n",
- "# print(s.name, s, len(s), up_data[\"up_sequence\"] == str(s))\n",
- "# up_data"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 5,
- "id": "ff132158",
- "metadata": {},
- "outputs": [],
- "source": [
- "# check USDA data\n",
- "metadata_file = \"./InputFiles/ASFV-G_proteome_accessions.csv\"\n",
- "pdb_dir = \"./InputFiles/AlphaFold-RENAME\""
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 6,
- "id": "d8ca29cb",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/html": [
- "<div>\n",
- "<style scoped>\n",
- " .dataframe tbody tr th:only-of-type {\n",
- " vertical-align: middle;\n",
- " }\n",
- "\n",
- " .dataframe tbody tr th {\n",
- " vertical-align: top;\n",
- " }\n",
- "\n",
- " .dataframe thead th {\n",
- " text-align: right;\n",
- " }\n",
- "</style>\n",
- "<table border=\"1\" class=\"dataframe\">\n",
- " <thead>\n",
- " <tr style=\"text-align: right;\">\n",
- " <th></th>\n",
- " <th>Protein</th>\n",
- " <th>Associated PDB</th>\n",
- " <th>NCBI_Accession</th>\n",
- " <th>UniProt_ID</th>\n",
- " <th>_struct.title</th>\n",
- " <th>_struct.pdbx_model_detail</th>\n",
- " <th>ranking debugg model ID</th>\n",
- " <th>notes</th>\n",
- " </tr>\n",
- " </thead>\n",
- " <tbody>\n",
- " <tr>\n",
- " <th>0</th>\n",
- " <td>285L</td>\n",
- " <td>285L.pdb</td>\n",
- " <td>CAD2068351.1</td>\n",
- " <td>A0A485PQD1</td>\n",
- " <td>ASFV-G 285L</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_1_pred_0</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>1</th>\n",
- " <td>A104R</td>\n",
- " <td>A104R.pdb</td>\n",
- " <td>CAD2068395.1</td>\n",
- " <td>A0A0A1E0L7</td>\n",
- " <td>ASFV-G A104R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_2_pred_0</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>2</th>\n",
- " <td>A118R</td>\n",
- " <td>A118R.pdb</td>\n",
- " <td>CAD2068397.1</td>\n",
- " <td>A0A2X0RVA9</td>\n",
- " <td>ASFV-G A118R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_1_pred_0</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>3</th>\n",
- " <td>A137R</td>\n",
- " <td>A137R.pdb</td>\n",
- " <td>CAD2068404.1</td>\n",
- " <td>A0A2X0THQ0</td>\n",
- " <td>ASFV-G A137R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_3_pred_0</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>4</th>\n",
- " <td>A151R</td>\n",
- " <td>A151R.pdb</td>\n",
- " <td>CAD2068398.1</td>\n",
- " <td>A0A2X0TC55</td>\n",
- " <td>ASFV-G A151R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_4_pred_0</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>...</th>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>192</th>\n",
- " <td>QP509L</td>\n",
- " <td>QP509L.pdb</td>\n",
- " <td>CAD2068484.1</td>\n",
- " <td>A0A2X0THX2</td>\n",
- " <td>ASFV-G QP509L</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>193</th>\n",
- " <td>R298L</td>\n",
- " <td>R298L.pdb</td>\n",
- " <td>CAD2068482.1</td>\n",
- " <td>A0A2X0SE42</td>\n",
- " <td>ASFV-G R298L</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_3_pred_0</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>194</th>\n",
- " <td>S183L</td>\n",
- " <td>S183L.pdb</td>\n",
- " <td>CAD2068472.1</td>\n",
- " <td>A0A2X0SE34</td>\n",
- " <td>ASFV-G S183L</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_4_pred_0</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>195</th>\n",
- " <td>S273R</td>\n",
- " <td>S273R.pdb</td>\n",
- " <td>CAD2068473.1</td>\n",
- " <td>A0A2X0TKM5</td>\n",
- " <td>ASFV-G S273R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_2_pred_0</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>196</th>\n",
- " <td>X69R</td>\n",
- " <td>X69R.pdb</td>\n",
- " <td>CAD2068372.1</td>\n",
- " <td>A0A2X0TKC7</td>\n",
- " <td>ASFV-G X69R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_2_pred_0</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " </tbody>\n",
- "</table>\n",
- "<p>197 rows × 8 columns</p>\n",
- "</div>"
- ],
- "text/plain": [
- " Protein Associated PDB NCBI_Accession UniProt_ID _struct.title \\\n",
- "0 285L 285L.pdb CAD2068351.1 A0A485PQD1 ASFV-G 285L \n",
- "1 A104R A104R.pdb CAD2068395.1 A0A0A1E0L7 ASFV-G A104R \n",
- "2 A118R A118R.pdb CAD2068397.1 A0A2X0RVA9 ASFV-G A118R \n",
- "3 A137R A137R.pdb CAD2068404.1 A0A2X0THQ0 ASFV-G A137R \n",
- "4 A151R A151R.pdb CAD2068398.1 A0A2X0TC55 ASFV-G A151R \n",
- ".. ... ... ... ... ... \n",
- "192 QP509L QP509L.pdb CAD2068484.1 A0A2X0THX2 ASFV-G QP509L \n",
- "193 R298L R298L.pdb CAD2068482.1 A0A2X0SE42 ASFV-G R298L \n",
- "194 S183L S183L.pdb CAD2068472.1 A0A2X0SE34 ASFV-G S183L \n",
- "195 S273R S273R.pdb CAD2068473.1 A0A2X0TKM5 ASFV-G S273R \n",
- "196 X69R X69R.pdb CAD2068372.1 A0A2X0TKC7 ASFV-G X69R \n",
- "\n",
- " _struct.pdbx_model_detail ranking debugg model ID notes \n",
- "0 This model was predicted using AlphaFold2 model_1_pred_0 NaN \n",
- "1 This model was predicted using AlphaFold2 model_2_pred_0 NaN \n",
- "2 This model was predicted using AlphaFold2 model_1_pred_0 NaN \n",
- "3 This model was predicted using AlphaFold2 model_3_pred_0 NaN \n",
- "4 This model was predicted using AlphaFold2 model_4_pred_0 NaN \n",
- ".. ... ... ... \n",
- "192 This model was predicted using AlphaFold2 NaN NaN \n",
- "193 This model was predicted using AlphaFold2 model_3_pred_0 NaN \n",
- "194 This model was predicted using AlphaFold2 model_4_pred_0 NaN \n",
- "195 This model was predicted using AlphaFold2 model_2_pred_0 NaN \n",
- "196 This model was predicted using AlphaFold2 model_2_pred_0 NaN \n",
- "\n",
- "[197 rows x 8 columns]"
- ]
- },
- "execution_count": 6,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "metadata = pd.read_csv(metadata_file)\n",
- "assert len(set(metadata.Protein)) == metadata.shape[0]\n",
- "assert len(set(metadata[\"Associated PDB\"])) == metadata.shape[0]\n",
- "metadata"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 66,
- "id": "cc7150d4",
- "metadata": {},
- "outputs": [],
- "source": [
- "pdb_files = [f for f in sorted(os.listdir(pdb_dir)) if f.endswith(\".pdb\")]"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 67,
- "id": "c038aa57",
- "metadata": {},
- "outputs": [],
- "source": [
- "# check names\n",
- "pdb_file_split = [os.path.splitext(f) for f in pdb_files]"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 68,
- "id": "287a8d61",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "ONLY AS PDB: ['QP509L-unrelaxed.pdb']\n",
- "ONLY IN METADATA: []\n"
- ]
- }
- ],
- "source": [
- "# CHECK THAT PDB FILES MATCH EXISTING ONES\n",
- "# -> extra QP509L-unrelaxed expected\n",
- "tstp = set(pdb_files)\n",
- "tstm = set(metadata[\"Associated PDB\"])\n",
- "print(\"ONLY AS PDB:\", sorted(tstp - tstm))\n",
- "print(\"ONLY IN METADATA:\", sorted(tstm - tstp))"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 70,
- "id": "cbf8d9ac",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "ONLY AS PDB: ['QP509L-unrelaxed']\n",
- "ONLY IN METADATA: []\n"
- ]
- }
- ],
- "source": [
- "# CHECK THAT FILE NAMES MATCH PROTEIN NAMES\n",
- "tstp = set(fs[0] for fs in pdb_file_split)\n",
- "tstm = set(metadata.Protein)\n",
- "print(\"ONLY AS PDB:\", sorted(tstp - tstm))\n",
- "print(\"ONLY IN METADATA:\", sorted(tstm - tstp))"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 14,
- "id": "95c0209e",
- "metadata": {},
- "outputs": [],
- "source": [
- "# can use either Protein or PDB name as index\n",
- "metadata = metadata.set_index(\"Protein\")"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 15,
- "id": "68a98f97",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/html": [
- "<div>\n",
- "<style scoped>\n",
- " .dataframe tbody tr th:only-of-type {\n",
- " vertical-align: middle;\n",
- " }\n",
- "\n",
- " .dataframe tbody tr th {\n",
- " vertical-align: top;\n",
- " }\n",
- "\n",
- " .dataframe thead th {\n",
- " text-align: right;\n",
- " }\n",
- "</style>\n",
- "<table border=\"1\" class=\"dataframe\">\n",
- " <thead>\n",
- " <tr style=\"text-align: right;\">\n",
- " <th></th>\n",
- " <th>Associated PDB</th>\n",
- " <th>NCBI_Accession</th>\n",
- " <th>UniProt_ID</th>\n",
- " <th>_struct.title</th>\n",
- " <th>_struct.pdbx_model_detail</th>\n",
- " <th>ranking debugg model ID</th>\n",
- " <th>notes</th>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>Protein</th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " </tr>\n",
- " </thead>\n",
- " <tbody>\n",
- " </tbody>\n",
- "</table>\n",
- "</div>"
- ],
- "text/plain": [
- "Empty DataFrame\n",
- "Columns: [Associated PDB, NCBI_Accession, UniProt_ID, _struct.title , _struct.pdbx_model_detail, ranking debugg model ID, notes]\n",
- "Index: []"
- ]
- },
- "execution_count": 15,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "# NOTE: stupid space there...\n",
- "metadata[metadata[\"_struct.title \"].isna()]"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 16,
- "id": "628099f5",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/html": [
- "<div>\n",
- "<style scoped>\n",
- " .dataframe tbody tr th:only-of-type {\n",
- " vertical-align: middle;\n",
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- " .dataframe tbody tr th {\n",
- " vertical-align: top;\n",
- " }\n",
- "\n",
- " .dataframe thead th {\n",
- " text-align: right;\n",
- " }\n",
- "</style>\n",
- "<table border=\"1\" class=\"dataframe\">\n",
- " <thead>\n",
- " <tr style=\"text-align: right;\">\n",
- " <th></th>\n",
- " <th>Associated PDB</th>\n",
- " <th>NCBI_Accession</th>\n",
- " <th>UniProt_ID</th>\n",
- " <th>_struct.title</th>\n",
- " <th>_struct.pdbx_model_detail</th>\n",
- " <th>ranking debugg model ID</th>\n",
- " <th>notes</th>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>Protein</th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " </tr>\n",
- " </thead>\n",
- " <tbody>\n",
- " </tbody>\n",
- "</table>\n",
- "</div>"
- ],
- "text/plain": [
- "Empty DataFrame\n",
- "Columns: [Associated PDB, NCBI_Accession, UniProt_ID, _struct.title , _struct.pdbx_model_detail, ranking debugg model ID, notes]\n",
- "Index: []"
- ]
- },
- "execution_count": 16,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "metadata[metadata[\"_struct.pdbx_model_detail\"].isna()]"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 17,
- "id": "79f8dbfa",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/html": [
- "<div>\n",
- "<style scoped>\n",
- " .dataframe tbody tr th:only-of-type {\n",
- " vertical-align: middle;\n",
- " }\n",
- "\n",
- " .dataframe tbody tr th {\n",
- " vertical-align: top;\n",
- " }\n",
- "\n",
- " .dataframe thead th {\n",
- " text-align: right;\n",
- " }\n",
- "</style>\n",
- "<table border=\"1\" class=\"dataframe\">\n",
- " <thead>\n",
- " <tr style=\"text-align: right;\">\n",
- " <th></th>\n",
- " <th>Associated PDB</th>\n",
- " <th>NCBI_Accession</th>\n",
- " <th>UniProt_ID</th>\n",
- " <th>_struct.title</th>\n",
- " <th>_struct.pdbx_model_detail</th>\n",
- " <th>ranking debugg model ID</th>\n",
- " <th>notes</th>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>Protein</th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " </tr>\n",
- " </thead>\n",
- " <tbody>\n",
- " <tr>\n",
- " <th>CP2475L_p14</th>\n",
- " <td>CP2475L_p14.pdb</td>\n",
- " <td>CAD2068454.1</td>\n",
- " <td>A0A2X0THU5</td>\n",
- " <td>ASFV-G CP2475L p14</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_4_pred_0</td>\n",
- " <td>protein p14 from the pp220 polyprotein encoded...</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>CP2475L_p34</th>\n",
- " <td>CP2475L_p34.pdb</td>\n",
- " <td>CAD2068454.1</td>\n",
- " <td>A0A2X0THU5</td>\n",
- " <td>ASFV-G CP2475L p34</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_4_pred_0</td>\n",
- " <td>protein p34 from the pp220 polyprotein encoded...</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>CP2475L_p37</th>\n",
- " <td>CP2475L_p37.pdb</td>\n",
- " <td>CAD2068454.1</td>\n",
- " <td>A0A2X0THU5</td>\n",
- " <td>ASFV-G CP2475L p37</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_4_pred_0</td>\n",
- " <td>protein p37 from the pp220 polyprotein encoded...</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>CP2475L_p150</th>\n",
- " <td>CP2475L_p150.pdb</td>\n",
- " <td>CAD2068454.1</td>\n",
- " <td>A0A2X0THU5</td>\n",
- " <td>ASFV-G CP2475L p150</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_1_pred_0</td>\n",
- " <td>protein p150 from the pp220 polyprotein encode...</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>CP2475L_p5</th>\n",
- " <td>CP2475L_p5.pdb</td>\n",
- " <td>CAD2068454.1</td>\n",
- " <td>A0A2X0THU5</td>\n",
- " <td>ASFV-G CP2475L p5</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_3_pred_0</td>\n",
- " <td>protein p5 from the pp220 polyprotein encoded ...</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>D250R</th>\n",
- " <td>D250R.pdb</td>\n",
- " <td>CAD2068464.1</td>\n",
- " <td>A0A2X0THV3</td>\n",
- " <td>ASFV-G D250R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_3_pred_0</td>\n",
- " <td>Mislabled on NCBI and Uniport as D205R</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>DP79L</th>\n",
- " <td>DP79L.pdb</td>\n",
- " <td>CAD2068466.1</td>\n",
- " <td>A0A0A1E158</td>\n",
- " <td>ASFV-G DP79L</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_3_pred_0</td>\n",
- " <td>Mislabled on Uniprot as D79L</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>hypothetical_01</th>\n",
- " <td>hypothetical_01.pdb</td>\n",
- " <td>CAD2068367.1</td>\n",
- " <td>A0A485PU43</td>\n",
- " <td>ASFV-G hypothetical_01</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_5_pred_0</td>\n",
- " <td>labeled as hypothetical on NCBI and Uniprot</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>hypothetical_02</th>\n",
- " <td>hypothetical_02.pdb</td>\n",
- " <td>CAD2068400.1</td>\n",
- " <td>A0A485PQI3</td>\n",
- " <td>ASFV-G hypothetical_02</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_3_pred_0</td>\n",
- " <td>labeled as hypthetical on NCBI and Uniprot</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>hypothetical_03</th>\n",
- " <td>hypothetical_03.pdb</td>\n",
- " <td>CAD2068512.1</td>\n",
- " <td>A0A485PZB7</td>\n",
- " <td>ASFV-G hypothetical_03</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_3_pred_0</td>\n",
- " <td>labeled as hypthetical on NCBI and Uniprot</td>\n",
- " </tr>\n",
- " </tbody>\n",
- "</table>\n",
- "</div>"
- ],
- "text/plain": [
- " Associated PDB NCBI_Accession UniProt_ID \\\n",
- "Protein \n",
- "CP2475L_p14 CP2475L_p14.pdb CAD2068454.1 A0A2X0THU5 \n",
- "CP2475L_p34 CP2475L_p34.pdb CAD2068454.1 A0A2X0THU5 \n",
- "CP2475L_p37 CP2475L_p37.pdb CAD2068454.1 A0A2X0THU5 \n",
- "CP2475L_p150 CP2475L_p150.pdb CAD2068454.1 A0A2X0THU5 \n",
- "CP2475L_p5 CP2475L_p5.pdb CAD2068454.1 A0A2X0THU5 \n",
- "D250R D250R.pdb CAD2068464.1 A0A2X0THV3 \n",
- "DP79L DP79L.pdb CAD2068466.1 A0A0A1E158 \n",
- "hypothetical_01 hypothetical_01.pdb CAD2068367.1 A0A485PU43 \n",
- "hypothetical_02 hypothetical_02.pdb CAD2068400.1 A0A485PQI3 \n",
- "hypothetical_03 hypothetical_03.pdb CAD2068512.1 A0A485PZB7 \n",
- "\n",
- " _struct.title \\\n",
- "Protein \n",
- "CP2475L_p14 ASFV-G CP2475L p14 \n",
- "CP2475L_p34 ASFV-G CP2475L p34 \n",
- "CP2475L_p37 ASFV-G CP2475L p37 \n",
- "CP2475L_p150 ASFV-G CP2475L p150 \n",
- "CP2475L_p5 ASFV-G CP2475L p5 \n",
- "D250R ASFV-G D250R \n",
- "DP79L ASFV-G DP79L \n",
- "hypothetical_01 ASFV-G hypothetical_01 \n",
- "hypothetical_02 ASFV-G hypothetical_02 \n",
- "hypothetical_03 ASFV-G hypothetical_03 \n",
- "\n",
- " _struct.pdbx_model_detail \\\n",
- "Protein \n",
- "CP2475L_p14 This model was predicted using AlphaFold2 \n",
- "CP2475L_p34 This model was predicted using AlphaFold2 \n",
- "CP2475L_p37 This model was predicted using AlphaFold2 \n",
- "CP2475L_p150 This model was predicted using AlphaFold2 \n",
- "CP2475L_p5 This model was predicted using AlphaFold2 \n",
- "D250R This model was predicted using AlphaFold2 \n",
- "DP79L This model was predicted using AlphaFold2 \n",
- "hypothetical_01 This model was predicted using AlphaFold2 \n",
- "hypothetical_02 This model was predicted using AlphaFold2 \n",
- "hypothetical_03 This model was predicted using AlphaFold2 \n",
- "\n",
- " ranking debugg model ID \\\n",
- "Protein \n",
- "CP2475L_p14 model_4_pred_0 \n",
- "CP2475L_p34 model_4_pred_0 \n",
- "CP2475L_p37 model_4_pred_0 \n",
- "CP2475L_p150 model_1_pred_0 \n",
- "CP2475L_p5 model_3_pred_0 \n",
- "D250R model_3_pred_0 \n",
- "DP79L model_3_pred_0 \n",
- "hypothetical_01 model_5_pred_0 \n",
- "hypothetical_02 model_3_pred_0 \n",
- "hypothetical_03 model_3_pred_0 \n",
- "\n",
- " notes \n",
- "Protein \n",
- "CP2475L_p14 protein p14 from the pp220 polyprotein encoded... \n",
- "CP2475L_p34 protein p34 from the pp220 polyprotein encoded... \n",
- "CP2475L_p37 protein p37 from the pp220 polyprotein encoded... \n",
- "CP2475L_p150 protein p150 from the pp220 polyprotein encode... \n",
- "CP2475L_p5 protein p5 from the pp220 polyprotein encoded ... \n",
- "D250R Mislabled on NCBI and Uniport as D205R \n",
- "DP79L Mislabled on Uniprot as D79L \n",
- "hypothetical_01 labeled as hypothetical on NCBI and Uniprot \n",
- "hypothetical_02 labeled as hypthetical on NCBI and Uniprot \n",
- "hypothetical_03 labeled as hypthetical on NCBI and Uniprot "
- ]
- },
- "execution_count": 17,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "metadata[~metadata.notes.isna()]"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 126,
- "id": "30f0abc2",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "protein p14 from the pp220 polyprotein encoded by CP2475L\n",
- "protein p34 from the pp220 polyprotein encoded by CP2475L\n",
- "protein p37 from the pp220 polyprotein encoded by CP2475L\n",
- "protein p150 from the pp220 polyprotein encoded by CP2475L\n",
- "protein p5 from the pp220 polyprotein encoded by CP2475L\n",
- "mislabeled on NCBI and UniProt as D205R\n",
- "mislabeled on UniProt as D79L\n",
- "labeled as hypothetical on NCBI and UniProt\n",
- "labeled as hypothetical on NCBI and UniProt\n",
- "labeled as hypothetical on NCBI and UniProt\n"
- ]
- }
- ],
- "source": [
- "for mdl_notes in metadata[~metadata.notes.isna()].notes:\n",
- " mdl_notes = mdl_notes.replace(\"hypthetical\", \"hypothetical\") \\\n",
- " .replace(\"Uniport\", \"UniProt\") \\\n",
- " .replace(\"Uniprot\", \"UniProt\") \\\n",
- " .replace(\"Mislabled\", \"mislabeled\")\n",
- " print(mdl_notes)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 121,
- "id": "9b11b709",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "'labeled as hypothetical on NCBI and Uniprot'"
- ]
- },
- "execution_count": 121,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "mdl_notes = 'labeled as hypthetical on NCBI and Uniprot'"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 31,
- "id": "4e1a1d06",
- "metadata": {},
- "outputs": [],
- "source": [
- "# tst = metadata.loc[\"hypothetical_03\"]\n",
- "# s = _get_ncbi_sequence(tst.NCBI_Accession)\n",
- "# up_data = _fetch_upkb_entry(tst.UniProt_ID)\n",
- "# print(s.name, s, len(s), up_data[\"up_sequence\"] == str(s))\n",
- "# up_data\n",
- "\n",
- "# checked all the one above manually and ok as stated (best to add to model_detail!)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 113,
- "id": "5f53cdc7",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "Associated PDB QP509L.pdb\n",
- "NCBI_Accession CAD2068484.1\n",
- "UniProt_ID A0A2X0THX2\n",
- "_struct.title ASFV-G QP509L\n",
- "_struct.pdbx_model_detail This model was predicted using AlphaFold2\n",
- "ranking debugg model ID NaN\n",
- "notes NaN\n",
- "NCBI_Gi 1886137009\n",
- "NCBI_UpdateDate 2020/08/05\n",
- "NCBI_TaxId 10497\n",
- "Name: QP509L, dtype: object"
- ]
- },
- "execution_count": 113,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "# special one...\n",
- "metadata.loc[\"QP509L\"]"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 33,
- "id": "84497409",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "{'This model was predicted using AlphaFold2'}"
- ]
- },
- "execution_count": 33,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "set(metadata[\"_struct.pdbx_model_detail\"])"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 34,
- "id": "3836742d",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "197"
- ]
- },
- "execution_count": 34,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "len(set(metadata[\"_struct.title \"]))"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 35,
- "id": "6bb77c3e",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "QP509L nan\n"
- ]
- }
- ],
- "source": [
- "# check model numbers\n",
- "tst = metadata[\"ranking debugg model ID\"]\n",
- "for idx, mdl_id in tst.items():\n",
- " mdl_num = None\n",
- " if type(mdl_id) == str:\n",
- " mdl_id_split = mdl_id.split('_')\n",
- " if len(mdl_id_split) == 4:\n",
- " mdl_num = int(mdl_id_split[1])\n",
- " if not mdl_num:\n",
- " print(idx, mdl_id)\n",
- " elif mdl_num not in range(1, 6):\n",
- " print(idx, mdl_id, mdl_num)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 36,
- "id": "7b163025",
- "metadata": {},
- "outputs": [],
- "source": [
- "def _check_subset(s1, s2):\n",
- " # check if s2 is uniquely contained in s1\n",
- " # (and if so, returns values for seq_db_align_begin & seq_db_align_end)\n",
- " if s1.count(s2) == 1:\n",
- " align_begin = s1.find(s2) + 1\n",
- " align_end = align_begin + len(s2) - 1\n",
- " return align_begin, align_end\n",
- " else:\n",
- " return None"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 37,
- "id": "0fe8bd2f",
- "metadata": {
- "scrolled": true
- },
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "CP2475L_p14 PDB seq. is subset of UP (369, 522)\n",
- "CP2475L_p14 PDB seq. is subset of NCBI (369, 522)\n",
- "CP2475L_p150 PDB seq. is subset of UP (894, 2476)\n",
- "CP2475L_p150 PDB seq. is subset of NCBI (894, 2476)\n",
- "CP2475L_p34 PDB seq. is subset of UP (45, 368)\n",
- "CP2475L_p34 PDB seq. is subset of NCBI (45, 368)\n",
- "CP2475L_p37 PDB seq. is subset of UP (523, 893)\n",
- "CP2475L_p37 PDB seq. is subset of NCBI (523, 893)\n",
- "CP2475L_p5 PDB seq. is subset of UP (2, 39)\n",
- "CP2475L_p5 PDB seq. is subset of NCBI (2, 39)\n"
- ]
- }
- ],
- "source": [
- "# check shared ones\n",
- "for protein, pdb_ext in sorted(pdb_file_split):\n",
- " if protein not in metadata.index:\n",
- " print(\"SKIPPING\", protein)\n",
- " continue\n",
- " else:\n",
- " row = metadata.loc[protein]\n",
- " pdb_path = os.path.join(pdb_dir, protein + pdb_ext)\n",
- " ent = io.LoadPDB(pdb_path)\n",
- " assert ent.chain_count == 1\n",
- " sqe = _get_sequence(ent.chains[0])\n",
- " s_ncbi = _get_ncbi_sequence(row.NCBI_Accession)\n",
- " up_data = _fetch_upkb_entry(row.UniProt_ID)\n",
- " if up_data[\"up_sequence\"] != str(s_ncbi):\n",
- " print(protein, \"inconsistent UP/NCBI sequences\", up_data[\"up_sequence\"], str(s_ncbi))\n",
- " if up_data[\"up_sequence\"] != sqe:\n",
- " tst = _check_subset(up_data[\"up_sequence\"], sqe)\n",
- " if tst:\n",
- " print(protein, \"PDB seq. is subset of UP\", tst)\n",
- " else:\n",
- " print(protein, \"inconsistent UP/PDB sequences\", up_data[\"up_sequence\"], sqe)\n",
- " if str(s_ncbi) != sqe:\n",
- " tst = _check_subset(str(s_ncbi), sqe)\n",
- " if tst:\n",
- " print(protein, \"PDB seq. is subset of NCBI\", tst)\n",
- " else:\n",
- " print(protein, \"inconsistent NCBI/PDB sequences\", str(s_ncbi), sqe)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 65,
- "id": "48165d13",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "{1.0} {0.0}\n",
- "IN UNRELAXED: []\n",
- "IN RELAXED: []\n"
- ]
- }
- ],
- "source": [
- "# check QP509L (take pLDDT from unrelaxed)\n",
- "ent_unr = io.LoadPDB(\"./InputFiles/AlphaFold-RENAME/QP509L-unrelaxed.pdb\")\n",
- "ent_rel = io.LoadPDB(\"./InputFiles/AlphaFold-RENAME/QP509L.pdb\")\n",
- "print(set(a.occupancy for a in ent_rel.atoms), set(a.b_factor for a in ent_rel.atoms))\n",
- "ev_atoms = set(a.qualified_name for a in ent_rel.atoms)\n",
- "eu_atoms = set(a.qualified_name for a in ent_unr.atoms)\n",
- "print(\"IN UNRELAXED:\", sorted(eu_atoms - ev_atoms))\n",
- "print(\"IN RELAXED:\", sorted(ev_atoms - eu_atoms))"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 43,
- "id": "fadfbdd0",
- "metadata": {},
- "outputs": [],
- "source": [
- "def _get_ncbi_info(ncbi_ac):\n",
- " \"\"\"Fetch dict with info from NCBI web service.\"\"\"\n",
- " # src: https://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESummary\n",
- " rspns = requests.get(f\"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/\" \\\n",
- " f\"esummary.fcgi?db=protein&id={ncbi_ac}\")\n",
- " dom = xml.dom.minidom.parseString(rspns.text)\n",
- " docsums = dom.getElementsByTagName(\"DocSum\")\n",
- " assert len(docsums) == 1\n",
- " docsum = docsums[0]\n",
- " ncbi_dict = {}\n",
- " for cn in docsum.childNodes:\n",
- " if cn.nodeName == \"Item\":\n",
- " cn_name = cn.getAttribute(\"Name\")\n",
- " cn_type = cn.getAttribute(\"Type\")\n",
- " if cn.childNodes:\n",
- " d = cn.childNodes[0].data\n",
- " if cn_type == \"String\":\n",
- " ncbi_dict[cn_name] = d\n",
- " elif cn_type == \"Integer\":\n",
- " ncbi_dict[cn_name] = int(d)\n",
- " else:\n",
- " raise RuntimeError(f\"Unknown type {cn_type} for {ncbi_ac}\")\n",
- " else:\n",
- " ncbi_dict[cn_name] = None\n",
- " return ncbi_dict"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 44,
- "id": "1114ebce",
- "metadata": {},
- "outputs": [],
- "source": [
- "# fetch some extra info from NCBI\n",
- "for idx, row in metadata.iterrows():\n",
- " ncbi_info = _get_ncbi_info(row.NCBI_Accession)\n",
- " # Gi is some numerical sequence identifier used internally by NCBI\n",
- " metadata.loc[idx, \"NCBI_Gi\"] = str(ncbi_info[\"Gi\"])\n",
- " # UpdateData is to be stored as the version date in ModelCIF\n",
- " metadata.loc[idx, \"NCBI_UpdateDate\"] = ncbi_info[\"UpdateDate\"]\n",
- " # TaxId should be same as one from UP\n",
- " metadata.loc[idx, \"NCBI_TaxId\"] = str(ncbi_info[\"TaxId\"])\n",
- " # Status expected to be live\n",
- " if ncbi_info[\"Status\"] != \"live\":\n",
- " print(idx, row.NCBI_Accession, \"Status\", ncbi_info[\"Status\"])\n",
- " # ReplacedBy expected to be empty\n",
- " if ncbi_info[\"ReplacedBy\"]:\n",
- " print(idx, row.NCBI_Accession, \"ReplacedBy\", ncbi_info[\"ReplacedBy\"])\n",
- " # AccessionVersion expected to be NCBI_Accession\n",
- " if ncbi_info[\"AccessionVersion\"] != row.NCBI_Accession:\n",
- " print(idx, row.NCBI_Accession, \"AccessionVersion\", ncbi_info[\"AccessionVersion\"])"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 45,
- "id": "e5d1ea29",
- "metadata": {
- "scrolled": true
- },
- "outputs": [
- {
- "data": {
- "text/html": [
- "<div>\n",
- "<style scoped>\n",
- " .dataframe tbody tr th:only-of-type {\n",
- " vertical-align: middle;\n",
- " }\n",
- "\n",
- " .dataframe tbody tr th {\n",
- " vertical-align: top;\n",
- " }\n",
- "\n",
- " .dataframe thead th {\n",
- " text-align: right;\n",
- " }\n",
- "</style>\n",
- "<table border=\"1\" class=\"dataframe\">\n",
- " <thead>\n",
- " <tr style=\"text-align: right;\">\n",
- " <th></th>\n",
- " <th>Associated PDB</th>\n",
- " <th>NCBI_Accession</th>\n",
- " <th>UniProt_ID</th>\n",
- " <th>_struct.title</th>\n",
- " <th>_struct.pdbx_model_detail</th>\n",
- " <th>ranking debugg model ID</th>\n",
- " <th>notes</th>\n",
- " <th>NCBI_Gi</th>\n",
- " <th>NCBI_UpdateDate</th>\n",
- " <th>NCBI_TaxId</th>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>Protein</th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " <th></th>\n",
- " </tr>\n",
- " </thead>\n",
- " <tbody>\n",
- " <tr>\n",
- " <th>285L</th>\n",
- " <td>285L.pdb</td>\n",
- " <td>CAD2068351.1</td>\n",
- " <td>A0A485PQD1</td>\n",
- " <td>ASFV-G 285L</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_1_pred_0</td>\n",
- " <td>NaN</td>\n",
- " <td>1886136876</td>\n",
- " <td>2020/08/05</td>\n",
- " <td>10497</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>A104R</th>\n",
- " <td>A104R.pdb</td>\n",
- " <td>CAD2068395.1</td>\n",
- " <td>A0A0A1E0L7</td>\n",
- " <td>ASFV-G A104R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_2_pred_0</td>\n",
- " <td>NaN</td>\n",
- " <td>1886136920</td>\n",
- " <td>2020/08/05</td>\n",
- " <td>10497</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>A118R</th>\n",
- " <td>A118R.pdb</td>\n",
- " <td>CAD2068397.1</td>\n",
- " <td>A0A2X0RVA9</td>\n",
- " <td>ASFV-G A118R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_1_pred_0</td>\n",
- " <td>NaN</td>\n",
- " <td>1886136922</td>\n",
- " <td>2020/08/05</td>\n",
- " <td>10497</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>A137R</th>\n",
- " <td>A137R.pdb</td>\n",
- " <td>CAD2068404.1</td>\n",
- " <td>A0A2X0THQ0</td>\n",
- " <td>ASFV-G A137R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_3_pred_0</td>\n",
- " <td>NaN</td>\n",
- " <td>1886136929</td>\n",
- " <td>2020/08/05</td>\n",
- " <td>10497</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>A151R</th>\n",
- " <td>A151R.pdb</td>\n",
- " <td>CAD2068398.1</td>\n",
- " <td>A0A2X0TC55</td>\n",
- " <td>ASFV-G A151R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_4_pred_0</td>\n",
- " <td>NaN</td>\n",
- " <td>1886136923</td>\n",
- " <td>2020/08/05</td>\n",
- " <td>10497</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>...</th>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>QP509L</th>\n",
- " <td>QP509L.pdb</td>\n",
- " <td>CAD2068484.1</td>\n",
- " <td>A0A2X0THX2</td>\n",
- " <td>ASFV-G QP509L</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>1886137009</td>\n",
- " <td>2020/08/05</td>\n",
- " <td>10497</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>R298L</th>\n",
- " <td>R298L.pdb</td>\n",
- " <td>CAD2068482.1</td>\n",
- " <td>A0A2X0SE42</td>\n",
- " <td>ASFV-G R298L</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_3_pred_0</td>\n",
- " <td>NaN</td>\n",
- " <td>1886137007</td>\n",
- " <td>2020/08/05</td>\n",
- " <td>10497</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>S183L</th>\n",
- " <td>S183L.pdb</td>\n",
- " <td>CAD2068472.1</td>\n",
- " <td>A0A2X0SE34</td>\n",
- " <td>ASFV-G S183L</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_4_pred_0</td>\n",
- " <td>NaN</td>\n",
- " <td>1886136997</td>\n",
- " <td>2020/08/05</td>\n",
- " <td>10497</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>S273R</th>\n",
- " <td>S273R.pdb</td>\n",
- " <td>CAD2068473.1</td>\n",
- " <td>A0A2X0TKM5</td>\n",
- " <td>ASFV-G S273R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_2_pred_0</td>\n",
- " <td>NaN</td>\n",
- " <td>1886136998</td>\n",
- " <td>2020/08/05</td>\n",
- " <td>10497</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>X69R</th>\n",
- " <td>X69R.pdb</td>\n",
- " <td>CAD2068372.1</td>\n",
- " <td>A0A2X0TKC7</td>\n",
- " <td>ASFV-G X69R</td>\n",
- " <td>This model was predicted using AlphaFold2</td>\n",
- " <td>model_2_pred_0</td>\n",
- " <td>NaN</td>\n",
- " <td>1886136897</td>\n",
- " <td>2020/08/05</td>\n",
- " <td>10497</td>\n",
- " </tr>\n",
- " </tbody>\n",
- "</table>\n",
- "<p>197 rows × 10 columns</p>\n",
- "</div>"
- ],
- "text/plain": [
- " Associated PDB NCBI_Accession UniProt_ID _struct.title \\\n",
- "Protein \n",
- "285L 285L.pdb CAD2068351.1 A0A485PQD1 ASFV-G 285L \n",
- "A104R A104R.pdb CAD2068395.1 A0A0A1E0L7 ASFV-G A104R \n",
- "A118R A118R.pdb CAD2068397.1 A0A2X0RVA9 ASFV-G A118R \n",
- "A137R A137R.pdb CAD2068404.1 A0A2X0THQ0 ASFV-G A137R \n",
- "A151R A151R.pdb CAD2068398.1 A0A2X0TC55 ASFV-G A151R \n",
- "... ... ... ... ... \n",
- "QP509L QP509L.pdb CAD2068484.1 A0A2X0THX2 ASFV-G QP509L \n",
- "R298L R298L.pdb CAD2068482.1 A0A2X0SE42 ASFV-G R298L \n",
- "S183L S183L.pdb CAD2068472.1 A0A2X0SE34 ASFV-G S183L \n",
- "S273R S273R.pdb CAD2068473.1 A0A2X0TKM5 ASFV-G S273R \n",
- "X69R X69R.pdb CAD2068372.1 A0A2X0TKC7 ASFV-G X69R \n",
- "\n",
- " _struct.pdbx_model_detail ranking debugg model ID \\\n",
- "Protein \n",
- "285L This model was predicted using AlphaFold2 model_1_pred_0 \n",
- "A104R This model was predicted using AlphaFold2 model_2_pred_0 \n",
- "A118R This model was predicted using AlphaFold2 model_1_pred_0 \n",
- "A137R This model was predicted using AlphaFold2 model_3_pred_0 \n",
- "A151R This model was predicted using AlphaFold2 model_4_pred_0 \n",
- "... ... ... \n",
- "QP509L This model was predicted using AlphaFold2 NaN \n",
- "R298L This model was predicted using AlphaFold2 model_3_pred_0 \n",
- "S183L This model was predicted using AlphaFold2 model_4_pred_0 \n",
- "S273R This model was predicted using AlphaFold2 model_2_pred_0 \n",
- "X69R This model was predicted using AlphaFold2 model_2_pred_0 \n",
- "\n",
- " notes NCBI_Gi NCBI_UpdateDate NCBI_TaxId \n",
- "Protein \n",
- "285L NaN 1886136876 2020/08/05 10497 \n",
- "A104R NaN 1886136920 2020/08/05 10497 \n",
- "A118R NaN 1886136922 2020/08/05 10497 \n",
- "A137R NaN 1886136929 2020/08/05 10497 \n",
- "A151R NaN 1886136923 2020/08/05 10497 \n",
- "... ... ... ... ... \n",
- "QP509L NaN 1886137009 2020/08/05 10497 \n",
- "R298L NaN 1886137007 2020/08/05 10497 \n",
- "S183L NaN 1886136997 2020/08/05 10497 \n",
- "S273R NaN 1886136998 2020/08/05 10497 \n",
- "X69R NaN 1886136897 2020/08/05 10497 \n",
- "\n",
- "[197 rows x 10 columns]"
- ]
- },
- "execution_count": 45,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "metadata"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 46,
- "id": "b8d18043",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "(193, {'10497'}, 193, {'2020/08/05'})"
- ]
- },
- "execution_count": 46,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "len(set(metadata.NCBI_Accession)), set(metadata.NCBI_TaxId), \\\n",
- "len(set(metadata.NCBI_Gi)), set(metadata.NCBI_UpdateDate)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 54,
- "id": "4385bd3d",
- "metadata": {},
- "outputs": [],
- "source": [
- "# all matching tax IDs?\n",
- "for protein, upac in metadata.UniProt_ID.items():\n",
- " up_info = _fetch_upkb_entry(upac)\n",
- " if up_info[\"up_ncbi_taxid\"] != \"10497\":\n",
- " print(protein, up_info)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 64,
- "id": "0376a9e3",
- "metadata": {},
- "outputs": [],
- "source": [
- "# check PDB files\n",
- "import ost\n",
- "from ost import testutils, conop\n",
- "# setup conop\n",
- "testutils.SetDefaultCompoundLib()\n",
- "io.profiles['DEFAULT'].processor = conop.RuleBasedProcessor(conop.GetDefaultLib())\n",
- "# check processing\n",
- "ost.PushVerbosityLevel(2)\n",
- "for protein, pdb_ext in sorted(pdb_file_split):\n",
- " pdb_path = os.path.join(pdb_dir, protein + pdb_ext)\n",
- " ent = io.LoadPDB(pdb_path)\n",
- "ost.PopVerbosityLevel()\n",
- "# NOTE: lack of output means that all atom names are ok"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 84,
- "id": "5a857298",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "{'up_organism': 'African swine fever virus (ASFV)',\n",
- " 'up_sequence': 'MLLYIVIIVACIISKLVPNEYWAIHLFFIIMIFMVYMYEKLDIHQKSQFWNYTMSGLSGHNVQVTCKCY',\n",
- " 'up_ac': 'A0A2X0TKC7',\n",
- " 'up_id': 'A0A2X0TKC7_ASF',\n",
- " 'up_last_mod': datetime.datetime(2018, 9, 12, 0, 0),\n",
- " 'up_gn': 'X69R CDS',\n",
- " 'up_ncbi_taxid': '10497',\n",
- " 'up_seqlen': 69,\n",
- " 'up_crc64': '3B92E4DB323A7A74',\n",
- " 'up_isoform': None}"
- ]
- },
- "execution_count": 84,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "up_info"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 85,
- "id": "6c8d2b8a",
- "metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "{'Caption': 'CAD2068372',\n",
- " 'Title': 'X69R CDS [African swine fever virus]',\n",
- " 'Extra': 'gi|1886136897|emb|CAD2068372.1|[1886136897]',\n",
- " 'Gi': 1886136897,\n",
- " 'CreateDate': '2010/08/18',\n",
- " 'UpdateDate': '2020/08/05',\n",
- " 'Flags': 0,\n",
- " 'TaxId': 10497,\n",
- " 'Length': 69,\n",
- " 'Status': 'live',\n",
- " 'ReplacedBy': None,\n",
- " 'Comment': ' ',\n",
- " 'AccessionVersion': 'CAD2068372.1'}"
- ]
- },
- "execution_count": 85,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "ncbi_info"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 154,
- "id": "f7097a09",
- "metadata": {},
- "outputs": [],
- "source": [
- "# check files that were converted (input is std out from run cut to only include \"translating...\")\n",
- "log_lines = open(\"./script_out.txt\").readlines()"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 155,
- "id": "34ed53d8",
- "metadata": {},
- "outputs": [],
- "source": [
- "# plenty of assertions in here should also catch any errors...\n",
- "idx = 1\n",
- "timings = dict()\n",
- "while idx < len(log_lines) - 1:\n",
- " l = log_lines[idx].strip()\n",
- " if \"already done...\" in l:\n",
- " idx += 1\n",
- " continue\n",
- " assert l.startswith(\"translating\")\n",
- " mdl_title = l[len(\"translating\"):-3].strip()\n",
- " if mdl_title in timings:\n",
- " print(\"WEIRD\", l)\n",
- " l = log_lines[idx + 1].strip()\n",
- " assert l.startswith(\"preparing data\")\n",
- " assert l.endswith(\"s)\")\n",
- " t_prep = float(l.split()[-1][1:-2])\n",
- " l = log_lines[idx + 2].strip()\n",
- " assert l.startswith(\"generating ModelCIF objects\")\n",
- " assert l.endswith(\"s)\")\n",
- " t_cif = float(l.split()[-1][1:-2])\n",
- " l = log_lines[idx + 3].strip()\n",
- " assert l.startswith(\"processing QA scores\")\n",
- " assert l.endswith(\"s)\")\n",
- " t_qa = float(l.split()[-1][1:-2])\n",
- " l = log_lines[idx + 4].strip()\n",
- " assert l.startswith(\"write to disk\")\n",
- " assert l.endswith(\"s)\")\n",
- " t_write = float(l.split()[-1][1:-2])\n",
- " l = log_lines[idx + 5].strip()\n",
- " assert l.startswith(\"... done with\")\n",
- " assert l.endswith(\"s).\")\n",
- " t_all = float(l.split()[-1][1:-3])\n",
- " timings[mdl_title] = {\n",
- " \"t_prep\": t_prep,\n",
- " \"t_cif\": t_cif,\n",
- " \"t_qa\": t_qa,\n",
- " \"t_write\": t_write,\n",
- " \"t_all\": t_all\n",
- " }\n",
- " idx += 6"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 156,
- "id": "876acf01",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "DONE 197 models\n",
- "MISSING 0 models\n"
- ]
- }
- ],
- "source": [
- "print(f\"DONE {len(timings)} models\")\n",
- "mdl_titles = set(metadata.index)\n",
- "assert len(set(timings) - mdl_titles) == 0\n",
- "missing_ones = mdl_titles - set(timings)\n",
- "print(f\"MISSING {len(missing_ones)} models\")"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 157,
- "id": "612a1791",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "TOTAL TIME SPENT: 356.38 s\n",
- "-> t_prep: 80.5%\n",
- "-> t_cif: 1.2%\n",
- "-> t_qa: 0.0%\n",
- "-> t_write: 17.8%\n"
- ]
- }
- ],
- "source": [
- "k_parts = [\"t_prep\", \"t_cif\", \"t_qa\", \"t_write\"]\n",
- "totals = {k: sum(v[k] for v in timings.values()) \\\n",
- " for k in k_parts + [\"t_all\"]}\n",
- "print(f\"TOTAL TIME SPENT: {round(totals['t_all'], 2)} s\")\n",
- "for k in k_parts:\n",
- " print(f\"-> {k}: {round(100 * totals[k] / totals['t_all'], 1)}%\")"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": null,
- "id": "283d223f",
- "metadata": {},
- "outputs": [],
- "source": []
- }
- ],
- "metadata": {
- "kernelspec": {
- "display_name": "Python 3 (ipykernel)",
- "language": "python",
- "name": "python3"
- },
- "language_info": {
- "codemirror_mode": {
- "name": "ipython",
- "version": 3
- },
- "file_extension": ".py",
- "mimetype": "text/x-python",
- "name": "python",
- "nbconvert_exporter": "python",
- "pygments_lexer": "ipython3",
- "version": "3.8.10"
- }
- },
- "nbformat": 4,
- "nbformat_minor": 5
-}
diff --git a/projects/USDA-ASFVG/tests/test_modelCIF_MA.py b/projects/USDA-ASFVG/tests/test_modelCIF_MA.py
deleted file mode 100644
index fc71c3ceab51fea843ea52e26410e9def438df8d..0000000000000000000000000000000000000000
--- a/projects/USDA-ASFVG/tests/test_modelCIF_MA.py
+++ /dev/null
@@ -1,476 +0,0 @@
-# USAGE: python test_modelCIF_MA.py [CIF-FILE]
-# OUTPUT: preview of MA entry
-
-import gemmi, sys
-
-################################################################################
-# define converters for printing or for html (here markdown used for display)
-def _make_url(link_text, link_url):
- return f"[{link_text}]({link_url})"
-def _make_list(list_top, list_items):
- list_texts = [f"- {item}" for item in list_items]
- list_text = '\n'.join(list_texts)
- if list_texts:
- return(f"{list_top}\n{list_text}")
-def _make_multiline_text(lines):
- return '\n'.join(lines)
-def _make_paragraph(text):
- return f"{text}\n\n"
-################################################################################
-
-################################################################################
-# HELPERS
-################################################################################
-def _get_chain_entity(block):
- # NOTE: adapted from ParseCIF (asym_ids as list and handle optional fields)
- chain_entity = {}
-
- ma_target_entity = block.find(
- "_ma_target_entity_instance.", ["asym_id", "entity_id"]
- )
- if ma_target_entity:
- for row in ma_target_entity:
- if row["entity_id"] in chain_entity:
- chain_entity[row["entity_id"]]["asym_ids"].append(
- gemmi.cif.as_string(row["asym_id"])
- )
- else:
- chain_entity[row["entity_id"]] = {
- "asym_ids": [row["asym_id"]],
- "ma_target_ref_db_details": [],
- }
-
- for row in block.find("_entity.", ["id", "pdbx_description"]):
- chain_entity[row["id"]].update(
- {"pdbx_description": gemmi.cif.as_string(row["pdbx_description"])}
- )
-
- cols = [
- "target_entity_id",
- "db_accession",
- "db_name",
- "?db_name_other_details",
- "?organism_scientific",
- "?seq_db_align_begin",
- "?seq_db_align_end",
- ]
- # NOTE: row[col] doesn't work with '?' in find! Bad crashed happen if you try...
- for row in block.find("_ma_target_ref_db_details.", cols):
- json_obj = {}
- target_entity_id = row[0] # make sure this stays at idx 0 in cols!
- for idx, cq in enumerate(cols):
- if cq.startswith('?'):
- col = cq[1:]
- if not row.has(idx) or gemmi.cif.is_null(row[idx]):
- json_obj[col] = None
- continue
- else:
- col = cq
- if col != "target_entity_id":
- if col.find("seq_db_align") > -1:
- json_obj[col] = gemmi.cif.as_int(row[idx])
- else:
- json_obj[col] = gemmi.cif.as_string(row[idx])
- chain_entity[target_entity_id][
- "ma_target_ref_db_details"
- ].append(json_obj)
-
- for row in block.find(
- "_entity_poly.",
- ["entity_id", "pdbx_strand_id", "pdbx_seq_one_letter_code"],
- ):
- chain_entity[row["entity_id"]]["olc"] = gemmi.cif.as_string(
- row["pdbx_seq_one_letter_code"]
- ).replace("\n", "")
-
- return chain_entity
-
-def _fetch_qa_data(block):
- """Get 3 lists of QA scores and extract global scores."""
- # fetch main info
- table = block.find("_ma_qa_metric.", ["id", "name", "mode", "type"])
- qa_dict = dict() # for easy access: keyed on "id" and rest as dict
- for row in table:
- d = {key: row.str(idx + 1) for idx, key in enumerate(["name", "mode", "type"])}
- qa_dict[row.str(0)] = d
- # fetch global scores
- qa_global = []
- table = block.find("_ma_qa_metric_global.", ["metric_id", "metric_value"])
- for row in table:
- metric_id = row.str(0)
- metric_value = gemmi.cif.as_number(row.get(1))
- if metric_id in qa_dict:
- assert qa_dict[metric_id]["mode"] == "global"
- qa_dict[metric_id]["value"] = metric_value
- qa_global.append(qa_dict[metric_id])
- # fetch local scores
- qa_local = [d for d in qa_dict.values() if d["mode"] == "local"]
- qa_local_pairwise = [d for d in qa_dict.values() if d["mode"] == "local-pairwise"]
- return qa_global, qa_local, qa_local_pairwise
-################################################################################
-
-################################################################################
-# TEXT GETTERS
-# -> each function turns gemmi-block into a text
-# -> bits that could be reused elsewhere are given by helpers above
-################################################################################
-def _get_title_text(block):
- title = block.find_value("_struct.title")
- if title:
- title = gemmi.cif.as_string(title)
- if title:
- return title
- else:
- return "NO TITLE"
-
-def _get_overview_text(block):
- abstract = block.find_value("_struct.pdbx_model_details")
- if abstract:
- abstract = gemmi.cif.as_string(abstract)
- if abstract:
- text = _make_paragraph(abstract)
- else:
- text = _make_paragraph("NO ABSTRACT")
- # TODO: "TOFILL" below to be filled by MA using info from model set
- text += _make_paragraph('This model is part of the dataset "TOFILL"')
- return text
-
-def _get_entity_text(block):
- # NOTE: reuse (updated!) code from ParseCIF
- chain_entity = _get_chain_entity(block)
- # do it
- item_strings = []
- for ent in chain_entity:
- item_title = f"{chain_entity[ent]['pdbx_description']} " \
- f"(chains: {', '.join(chain_entity[ent]['asym_ids'])})"
- db_links = [item_title]
- for i, ref in enumerate(chain_entity[ent]["ma_target_ref_db_details"]):
- if ref["db_name"] == "UNP":
- link_text = ref['db_accession']
- link_url = f"https://www.uniprot.org/uniprot/{ref['db_accession']}"
- db_link = f"UniProt: {_make_url(link_text, link_url)}"
- elif ref["db_name"] == "OrthoDB":
- link_text = ref['db_accession']
- link_url = f"https://www.orthodb.org/?query={ref['db_accession']}"
- db_link = f"OrthoDB: {_make_url(link_text, link_url)}"
- elif ref["db_name"] == "NCBI":
- link_text = ref['db_accession']
- link_url = f"https://www.ncbi.nlm.nih.gov/protein/{ref['db_accession']}"
- db_link = f"NCBI: {_make_url(link_text, link_url)}"
- elif ref["db_name"] == "Other" and ref["db_name_other_details"]:
- db_link = f"{ref['db_name_other_details']}: {ref['db_accession']}"
- else:
- db_link = f"{ref['db_name']}: {ref['db_accession']}"
- if ref['seq_db_align_begin'] and ref['seq_db_align_end']:
- db_link += f" {ref['seq_db_align_begin']}-{ref['seq_db_align_end']}"
- if ref['organism_scientific']:
- db_link += f"; {ref['organism_scientific']}"
- db_links.append(db_link)
- item_strings.append(_make_multiline_text(db_links))
- # and into a paragraph...
- if item_strings:
- list_top = f"The following molecular entities are in the model:"
- return _make_paragraph(_make_list(list_top, item_strings))
- else:
- return ""
-
-def _get_sw_text(block):
- # get author names for each citation
- tmp = dict()
- for row in block.find("_citation_author.", ["citation_id", "name"]):
- cid = row.str(0)
- name = row.str(1)
- if cid not in tmp:
- tmp[cid] = {"name": name.split()[0].split(",")[0], "etal": ""}
- else:
- tmp[cid]["etal"] = " et al."
- cit_names = {cid: (d["name"] + d["etal"]) for cid, d in tmp.items()}
- # add year if available
- table = block.find("_citation.", ["id", "?year"])
- if table.has_column(1):
- for row in table:
- cid = row.str(0)
- year = row.str(1)
- if cid in cit_names and year:
- cit_names[cid] += " " + year
- # add URL if available
- cit_urls = {}
- table = block.find("_citation.", ["id", "?pdbx_database_id_DOI", "?pdbx_database_id_PubMed"])
- formatters = ["https://doi.org/%s",
- "https://www.ncbi.nlm.nih.gov/pubmed/%s"]
- for row in table:
- cid = row.str(0)
- # add whichever URL we find first
- for i in range(1, table.width()):
- if row.has(i) and row.str(i):
- cit_urls[cid] = formatters[i - 1] % row.str(i)
- break
- # now map this to software
- item_strings = []
- table = block.find("_software.", ["name", "?location", "?version", "?citation_id"])
- for row in table:
- sw_name = row.str(0)
- if row.has(1) and row.str(1):
- item = _make_url(sw_name, row.str(1))
- else:
- item = sw_name
- if row.has(2) and row.str(2):
- item += f" ({row.str(2)})"
- if row.has(3) and row.str(3) in cit_names:
- cid = row.str(3)
- if cid in cit_urls:
- item += f" ({_make_url(cit_names[cid], cit_urls[cid])})"
- else:
- item += f" ({cit_names[cid]})"
- item_strings.append(item)
- # and into a paragraph...
- if item_strings:
- list_top = f"The following software was used:"
- return _make_paragraph(_make_list(list_top, item_strings))
- else:
- return ""
-
-def _get_ref_db_text(block):
- # look for DBs with version or release date
- item_strings = []
- table = block.find("_ma_data_ref_db.", ["name", "?version", "?release_date"])
- for row in table:
- item = f"{row.str(0)}"
- # add whichever version we find first
- for i in range(1, 3):
- if row.has(i) and row.str(i):
- item += f" ({row.str(i)})"
- break
- item_strings.append(item)
- # and into a paragraph...
- if item_strings:
- list_top = f"The following reference databases were used:"
- return _make_paragraph(_make_list(list_top, item_strings))
- else:
- return ""
-
-def _get_tpl_text(block):
- # collect info per tpl-id
- tpl_dict = {} # keyed on template_id
- # fetch main info
- cols = ["template_id", "target_asym_id", "template_auth_asym_id",
- "?template_label_asym_id"]
- for row in block.find("_ma_template_details.", cols):
- tid = row.str(0)
- tpl_dict[tid] = {
- "trg_asym_id": row.str(1),
- "tpl_auth_asym_id": row.str(2)
- }
- if row.has(3) and row.str(3):
- tpl_dict[tid]["tpl_label_asym_id"] = row.str(3)
- # add ref DBs
- cols = ["template_id", "db_accession_code", "db_name",
- "?db_name_other_details"]
- for row in block.find("_ma_template_ref_db_details.", cols):
- tid = row.str(0)
- if tid in tpl_dict:
- tpl_dict[tid]["db_acc"] = row.str(1)
- if row.str(2) == "Other" and row.has(3) and row.str(3):
- tpl_dict[tid]["db_name"] = row.str(3)
- else:
- tpl_dict[tid]["db_name"] = row.str(2)
- # add info for small molecules
- cols = ["template_id", "?comp_id", "?details"]
- for row in block.find("_ma_template_non_poly.", cols):
- tid = row.str(0)
- if tid in tpl_dict:
- if row.has(1) and row.str(1):
- tpl_dict[tid]["non_poly_comp_id"] = row.str(1)
- if row.has(2) and row.str(2):
- tpl_dict[tid]["non_poly_details"] = row.str(2)
- # aggregate per template for diplaying
- tpl_td = dict()
- for tpl in tpl_dict.values():
- did = f"{tpl['db_name']}-{tpl['db_acc']}"
- if did not in tpl_td:
- if tpl['db_name'] == "PDB":
- link_url = f"http://dx.doi.org/10.2210/pdb{tpl['db_acc']}/pdb"
- elif tpl['db_name'] == "PubChem":
- link_url = f"https://pubchem.ncbi.nlm.nih.gov/compound/{tpl['db_acc']}"
- elif tpl['db_name'] == "AlphaFoldDB":
- link_url = f"https://alphafold.ebi.ac.uk/entry/{tpl['db_acc']}"
- else:
- link_url = None
- print(f"URLs for {tpl['db_name']} NOT SUPPORTED YET")
- if link_url:
- tpl_text = f"{tpl['db_name']}: {_make_url(tpl['db_acc'], link_url)}"
- else:
- tpl_text = f"{tpl['db_name']}: {tpl['db_acc']}"
- tpl_td[did] = {
- "tpl_text": tpl_text,
- "tpl_chains_label": [],
- "tpl_chains_auth": [],
- "tpl_chains_all_label": True,
- "tpl_non_poly_ids": []
- }
- # collect chain names
- if "tpl_label_asym_id" in tpl:
- # if here it is guaranteed to be non-empty
- tpl_td[did]["tpl_chains_label"].append(tpl["tpl_label_asym_id"])
- else:
- # if any missing, we set all to False and fall back to auth
- tpl_td[did]["tpl_chains_all_label"] = False
- if tpl["tpl_auth_asym_id"]:
- # only add non empty ones
- tpl_td[did]["tpl_chains_auth"].append(tpl["tpl_auth_asym_id"])
- # collect info on non poly if available (prefer short comp. ID)
- if "non_poly_comp_id" in tpl:
- tpl_td[did]["tpl_non_poly_ids"].append(tpl["non_poly_comp_id"])
- elif "non_poly_details" in tpl:
- tpl_td[did]["tpl_non_poly_ids"].append(tpl["non_poly_details"])
- # turn into text
- item_strings = []
- for tpl in tpl_td.values():
- item = tpl["tpl_text"]
- if tpl["tpl_chains_all_label"] and tpl["tpl_chains_label"]:
- chain_ids = sorted(set(tpl['tpl_chains_label']))
- item += f"; chains (label_asym_id): {', '.join(chain_ids)}"
- elif tpl["tpl_chains_auth"]:
- chain_ids = sorted(set(tpl['tpl_chains_auth']))
- item += f"; chains (auth_asym_id): {', '.join(chain_ids)}"
- if tpl["tpl_non_poly_ids"]:
- np_ids = sorted(set(tpl['tpl_non_poly_ids']))
- item += f"; non-polymers: {', '.join(np_ids)}"
- item_strings.append(item)
- # and into a paragraph...
- if item_strings:
- list_top = f"The following templates were used:"
- return _make_paragraph(_make_list(list_top, item_strings))
- else:
- return ""
-
-def _get_protocol_steps_text(block):
- # do it
- item_strings = []
- table = block.find("_ma_protocol_step.", ["step_id", "method_type", "?details"])
- for row in table:
- item = f"Step {row.str(0)} - {row.str(1)}"
- if row.has(2) and row.str(2):
- item += f" : {row.str(2)}"
- item_strings.append(item)
- # and into a paragraph...
- if item_strings:
- return _make_paragraph(_make_multiline_text(item_strings))
- else:
- return ""
-
-def _get_qa_acc_text(block):
- # get QA part (can reuse if already used elsewhere)
- qa_global, qa_local, qa_local_pairwise = _fetch_qa_data(block)
- # parse accompanying data
- file_contents = block.find_values("_ma_entry_associated_files.file_content")
- has_single_zip_file = len(file_contents) == 1 and \
- file_contents.str(0) == "archive with multiple files"
- if has_single_zip_file:
- # override with data from other block
- file_contents = block.find_values("_ma_associated_archive_file_details.file_content")
- has_loc_pw_in_acc = any(True for v in file_contents \
- if gemmi.cif.as_string(v) == "local pairwise QA scores")
- # put together text
- text = ""
- # text for QA
- item = ""
- if len(qa_global) > 1:
- score_strings = [f"{v['name']} of {v['value']}" for v in qa_global]
- item = f"The model has the following global model confidence scores:" \
- f" {', '.join(score_strings)}."
- elif len(qa_global) == 1:
- item = f"The model has a global model confidence score " \
- f"({qa_global[0]['name']}) of {qa_global[0]['value']}."
- if item:
- text += _make_paragraph(item)
- # lots of options for local QA string
- item = ""
- qa_local_names = ", ".join([v["name"] for v in qa_local])
- qa_loc_pw_names = ", ".join([v["name"] for v in qa_local_pairwise])
- if qa_local_names and qa_loc_pw_names and has_loc_pw_in_acc:
- item = f"Local per-residue model confidence scores ({qa_local_names}) " \
- f"are available in the model mmCIF file " \
- f"and local per-residue-pair scores ({qa_loc_pw_names}) " \
- f"in the accompanying data download."
- elif qa_local_names and qa_loc_pw_names and not has_loc_pw_in_acc:
- item = f"Local per-residue model confidence scores ({qa_local_names}) " \
- f"and local per-residue-pair scores ({qa_loc_pw_names}) " \
- f"are available in the model mmCIF file."
- elif qa_local_names and not qa_loc_pw_names:
- item = f"Local per-residue model confidence scores ({qa_local_names}) " \
- f"are available in the model mmCIF file."
- elif not qa_local_names and qa_loc_pw_names and has_loc_pw_in_acc:
- item = f"Local per-residue-pair model confidence scores ({qa_loc_pw_names}) " \
- f"are available in the accompanying data download."
- elif not qa_local_names and qa_loc_pw_names and not has_loc_pw_in_acc:
- item = f"Local per-residue-pair model confidence scores ({qa_loc_pw_names}) " \
- f"are available in the model mmCIF file."
- if item:
- text += _make_paragraph(item)
- # list files in accompanying data (if any)
- if has_single_zip_file:
- table = block.find("_ma_associated_archive_file_details.",
- ["file_path", "?file_content", "?description"])
- else:
- # NOTE: aimed to work legacy-style for Baker-models but should be obsoleted
- # -> can replace below with "table = None" in future
- table = block.find("_ma_entry_associated_files.",
- ["file_url", "?file_content", "?details"])
- if table:
- list_top = "Files in accompanying data:"
- list_items = []
- for row in table:
- item = f"{row.str(0)}"
- if row.has(1) and row.str(1):
- item += f" ({row.str(1)})"
- if row.has(2) and row.str(2):
- item += f": {row.str(2)}"
- list_items.append(item)
- text += _make_paragraph(_make_list(list_top, list_items))
- # conclude with standard pointer to ModelCIF file
- model_cif_link = _make_url(
- "ModelCIF format",
- "https://mmcif.wwpdb.org/dictionaries/mmcif_ma.dic/Index/"
- )
- text += _make_paragraph(
- f"Full details are available in {model_cif_link}" \
- f"in the model mmCIF file."
- )
- return text
-################################################################################
-
-# full parsing of file
-def _process_file(file_path):
- print(f"ModelCIF->MA for {file_path}")
- doc = gemmi.cif.read(file_path)
- block = doc.sole_block()
- print('-'*80)
- print(f"TITLE: {_get_title_text(block)}")
- print('-'*80)
- print(f"OVERVIEW:\n{'-'*80}")
- print(_get_overview_text(block))
- print('-'*80)
- print(f"MATERIAL:\n{'-'*80}")
- material_text = _get_entity_text(block) \
- + _get_sw_text(block) \
- + _get_ref_db_text(block) \
- + _get_tpl_text(block)
- print(material_text)
- print('-'*80)
- print(f"PROCEDURE:\n{'-'*80}")
- procedure_text = _get_protocol_steps_text(block) \
- + _get_qa_acc_text(block)
- print(procedure_text)
- print('-'*80)
-
-def _main():
- # get file to process
- if len(sys.argv) == 2:
- file_path = sys.argv[1]
- _process_file(file_path)
- else:
- print("USAGE: python test_modelCIF_MA.py [CIF-FILE]")
-
-if __name__ == "__main__":
- _main()
diff --git a/projects/cancer-PPI-domains/README.md b/projects/cancer-PPI-domains/README.md
new file mode 100644
index 0000000000000000000000000000000000000000..c3a4cf694576886f839a47f11eef59ef0e428145
--- /dev/null
+++ b/projects/cancer-PPI-domains/README.md
@@ -0,0 +1,23 @@
+# Modelling of Spongilla lacustris proteome with functional annotations
+
+[Link to project in ModelArchive](https://modelarchive.org/doi/10.5452/ma-t3vr3) (incl. background on project itself)
+
+Setup:
+- Domains of interacting proteins extracted from full length proteins (sequences from UniProtKB)
+- Models generated using sequences of domains which can have discontinuous mapping to full length sequence
+- Same protocol used as in [model set for core eukaryotic protein complexes](https://www.modelarchive.org/doi/10.5452/ma-bak-cepc)
+ - Paired multiple sequence alignment (MSA) generated for each dimer
+ - Model using AlphaFold ("model 3" parameters; pTM monomer version) with a 200 residue gap between the two chains, without templates and without model relaxation
+- Input from them:
+ - one zip file with all the PDB files (no b-factor values, residue numbers matching position in UniProtKB sequence)
+ - one zip file with all the extra files (1 fasta file for alignment, 1 npz file with pLDDT, PAE and contact probabilities)
+ - a CSV file with description and UniProtKB links for each protein
+
+Special features here:
+- Custom MSA generation with intermediate result in accompanying data
+- PAE and contact probabilities only kept for inter-chain residue-pairs
+- Author provided residue numbers kept as auth_seq_id
+- Mapping to most recent UniProtKB sequence generated, checked and stored as fasta files (ModelCIF file only has covered range with respect to the originally used sequence)
+
+Content:
+- translate2modelcif.py : script to do conversion; compatible with Docker setup from [ma-wilkins-import](https://git.scicore.unibas.ch/schwede/ma-wilkins-import) (and script based on code there)
diff --git a/projects/cancer-PPI-domains/translate2modelcif.py b/projects/cancer-PPI-domains/translate2modelcif.py
new file mode 100644
index 0000000000000000000000000000000000000000..f5076cd6c684f277c2bb713f0d40a12e19a4253b
--- /dev/null
+++ b/projects/cancer-PPI-domains/translate2modelcif.py
@@ -0,0 +1,1106 @@
+#! /usr/local/bin/ost
+"""Translate models from Jing Zhang from PDB + extra data into ModelCIF."""
+
+# EXAMPLES for running:
+"""
+GT test setup:
+ost scripts/translate2modelcif.py ./pdbs ./accompanying_data \
+ ./modelarchive_submission.csv ./modelcif
+# DO ALL
+ost scripts/translate2modelcif.py ./pdbs ./accompanying_data \
+ ./modelarchive_submission.csv ./modelcif --compress > script_out.txt
+"""
+
+import argparse
+import datetime
+import gzip
+import os
+import shutil
+import sys
+import zipfile
+
+from timeit import default_timer as timer
+import numpy as np
+import requests
+import ujson as json
+
+import ihm
+import ihm.citations
+import modelcif
+import modelcif.associated
+import modelcif.dumper
+import modelcif.model
+import modelcif.protocol
+import modelcif.reference
+
+import pandas as pd
+from ost import io, seq
+
+# global cache
+up_cache = {}
+
+def _parse_args():
+ """Parse command line arguments."""
+ parser = argparse.ArgumentParser(
+ formatter_class=argparse.RawDescriptionHelpFormatter,
+ description=__doc__,
+ )
+
+ parser.add_argument(
+ "model_dir",
+ type=str,
+ metavar="<MODEL DIR>",
+ help="Directory with models to be translated.",
+ )
+ parser.add_argument(
+ "accompanying_data_dir",
+ type=str,
+ metavar="<ACC. DIR>",
+ help="Directory with zip files containing accompanying data.",
+ )
+ parser.add_argument(
+ "metadata_file",
+ type=str,
+ metavar="<METADATA FILE>",
+ help="Path to CSV file with metadata.",
+ )
+ parser.add_argument(
+ "out_dir",
+ type=str,
+ metavar="<OUTPUT DIR>",
+ help="Path to directory to store results.",
+ )
+ parser.add_argument(
+ "--compress",
+ default=False,
+ action="store_true",
+ help="Compress ModelCIF file with gzip "
+ "(note that QA file is zipped either way).",
+ )
+ opts = parser.parse_args()
+
+ # check that model dir exists
+ if opts.model_dir.endswith("/"):
+ opts.model_dir = opts.model_dir[:-1]
+ if not os.path.exists(opts.model_dir):
+ _abort_msg(f"Model directory '{opts.model_dir}' does not exist.")
+ if not os.path.isdir(opts.model_dir):
+ _abort_msg(f"Path '{opts.model_dir}' does not point to a directory.")
+ # check that acc. dir exists
+ if opts.accompanying_data_dir.endswith("/"):
+ opts.accompanying_data_dir = opts.accompanying_data_dir[:-1]
+ if not os.path.exists(opts.accompanying_data_dir):
+ _abort_msg(f"Model directory '{opts.accompanying_data_dir}' does not exist.")
+ if not os.path.isdir(opts.accompanying_data_dir):
+ _abort_msg(f"Path '{opts.accompanying_data_dir}' does not point to a directory.")
+ # check metadata_file
+ if not os.path.exists(opts.metadata_file):
+ _abort_msg(f"Metadata file '{opts.metadata_file}' does not exist.")
+ if not os.path.isfile(opts.metadata_file):
+ _abort_msg(f"Path '{opts.metadata_file}' does not point to a file.")
+ # check out_dir
+ if opts.out_dir.endswith("/"):
+ opts.out_dir = opts.out_dir[:-1]
+ if not os.path.exists(opts.out_dir):
+ os.makedirs(opts.out_dir)
+ if not os.path.isdir(opts.out_dir):
+ _abort_msg(f"Path '{opts.out_dir}' does not point to a directory.")
+ return opts
+
+
+# pylint: disable=too-few-public-methods
+class _GlobalPLDDT(modelcif.qa_metric.Global, modelcif.qa_metric.PLDDT):
+ """Predicted accuracy according to the CA-only lDDT in [0,100]"""
+
+ name = "pLDDT"
+ software = None
+
+
+class _LocalPLDDT(modelcif.qa_metric.Local, modelcif.qa_metric.PLDDT):
+ """Predicted accuracy according to the CA-only lDDT in [0,100]"""
+
+ name = "pLDDT"
+ software = None
+
+
+class _PAE(modelcif.qa_metric.MetricType):
+ """Predicted aligned error (in Angstroms)"""
+
+ type = "PAE"
+ other_details = None
+
+
+class _LocalPairwisePAE(modelcif.qa_metric.LocalPairwise, _PAE):
+ """Predicted aligned error (in Angstroms)"""
+
+ name = "PAE"
+ software = None
+
+
+class _ContactProb(modelcif.qa_metric.MetricType):
+ """Contact probability of a pairwise interaction in [0,1]"""
+
+ type = "contact probability"
+ other_details = None
+
+
+class _LocalPairwiseCP(modelcif.qa_metric.LocalPairwise, _ContactProb):
+ """Contact probability of a pairwise interaction in [0,1]"""
+
+ name = "contact probability"
+ software = None
+
+
+# pylint: enable=too-few-public-methods
+
+
+class _OST2ModelCIF(modelcif.model.AbInitioModel):
+ """Map OST entity elements to ihm.model"""
+
+ def __init__(self, *args, **kwargs):
+ """Initialise a model"""
+ for i in ["ost_entity", "asym", "scores_json"]:
+ if i not in kwargs:
+ raise TypeError(f"Required keyword argument '{i}' not found.")
+ self.ost_entity = kwargs.pop("ost_entity")
+ self.asym = kwargs.pop("asym")
+ self.scores_json = kwargs.pop("scores_json")
+ # need reverse mapping from chain name + res num to seq. id
+ self.seq_id_map = {
+ ch.name: {
+ res.number.num: idx+1 for idx, res in enumerate(ch.residues)
+ } for ch in self.ost_entity.chains
+ }
+ # self.seq_id_map = {
+ # ch_id: {v: k for k, v in asym_unit.auth_seq_id_map.items()} \
+ # for ch_id, asym_unit in self.asym.items()
+ # }
+ # fetch plddts for all residues (for mapping)
+ self.res_bfactors = {
+ r.qualified_name: self.scores_json["plddt"][i] \
+ for i, r in enumerate(self.ost_entity.residues)
+ }
+
+ super().__init__(*args, **kwargs)
+
+ def get_atoms(self):
+ # note we blindly replace b-factors here!
+ for atm in self.ost_entity.atoms:
+ yield modelcif.model.Atom(
+ asym_unit=self.asym[atm.chain.name],
+ seq_id=self.seq_id_map[atm.chain.name][atm.residue.number.num],
+ atom_id=atm.name,
+ type_symbol=atm.element,
+ x=atm.pos[0],
+ y=atm.pos[1],
+ z=atm.pos[2],
+ het=atm.is_hetatom,
+ biso=self.res_bfactors[atm.residue.qualified_name],
+ occupancy=atm.occupancy,
+ )
+
+ def add_scores(self):
+ """Add QA metrics from AF2 scores."""
+ # global scores
+ self.qa_metrics.append(
+ _GlobalPLDDT(np.mean(self.scores_json["plddt"]))
+ )
+
+ # local scores
+ lpae = []
+ lcp = []
+ i = 0
+ for chn_idx, chn_i in enumerate(self.ost_entity.chains):
+ for res_i in chn_i.residues:
+ # local pLDDT
+ seq_id_i = self.seq_id_map[chn_i.name][res_i.number.num]
+ asym_i = self.asym[chn_i.name].residue(seq_id_i)
+ self.qa_metrics.append(
+ _LocalPLDDT(asym_i, self.scores_json["plddt"][i])
+ )
+
+ # per-residue scores
+ # NOTE: only off diagonal stored (i.e. chain A with chain B)
+ j = 0
+ for chn_j in self.ost_entity.chains[chn_idx+1:]:
+ for res_j in chn_j.residues:
+ seq_id_j = self.seq_id_map[chn_j.name][res_j.number.num]
+ asym_j = self.asym[chn_j.name].residue(seq_id_j)
+ pae_ij = self.scores_json["pae"][i][j]
+ lpae.append(
+ _LocalPairwisePAE(asym_i, asym_j, pae_ij)
+ )
+ cp_ij = self.scores_json["contact_prob"][i][j]
+ lcp.append(
+ _LocalPairwiseCP(asym_i, asym_j, round(cp_ij, 3))
+ )
+ j += 1
+
+ i += 1
+
+ self.qa_metrics.extend(lpae)
+ self.qa_metrics.extend(lcp)
+
+
+def _abort_msg(msg, exit_code=1):
+ """Write error message and exit with exit_code."""
+ print(f"{msg}\nAborting.", file=sys.stderr)
+ sys.exit(exit_code)
+
+
+def _warn_msg(msg):
+ """Write a warning message to stdout."""
+ print(f"WARNING: {msg}")
+
+
+def _check_file(file_path):
+ """Make sure a file exists and is actually a file."""
+ if not os.path.exists(file_path):
+ _abort_msg(f"File not found: '{file_path}'.")
+ if not os.path.isfile(file_path):
+ _abort_msg(f"File path does not point to file: '{file_path}'.")
+
+
+def _get_audit_authors():
+ """Return the list of authors that produced this model."""
+ return (
+ "Zhang, J.",
+ "Pei, J.",
+ "Durham, J.",
+ "Bos, T.",
+ "Cong, Q.",
+ )
+
+
+def _get_metadata(metadata_file):
+ """Read csv file with metedata and prepare for next steps."""
+ # NEEDS LOTS OF CLEANUP!!
+ # -> ASSUMED "A" always chain A
+ df_in = pd.read_csv(metadata_file)
+ cols = None
+ mdl_part_txt = " This model is part of"
+ mdl_af_txt = "Model generated using AlphaFold2"
+ for idx, row in df_in.iterrows():
+ if row[0].startswith("#"):
+ continue
+ elif cols is None:
+ cols = list(row[~row.isna()])
+ df = pd.DataFrame(columns=cols)
+ else:
+ row_data = [row[0]]
+ # fix overview entry (ASSUME "A" is always chain 1)
+ # -> any ',' in oevreview was split into columns
+ # -> also new-lines missing between lines
+ # -> and need to remove "This model is part of ..." text
+ ch1_idx = row.to_list().index("A")
+ overview = ",".join(row[1:ch1_idx])
+ mdl_af_idx = overview.index(mdl_af_txt)
+ mdl_rel_idx = overview.index(mdl_part_txt)
+ assert mdl_af_idx < mdl_rel_idx
+ ov_fixed = overview[:mdl_af_idx] + "\n\n" \
+ + overview[mdl_af_idx:mdl_rel_idx]
+ row_data.append(ov_fixed)
+ data_end_idx = ch1_idx + len(cols) - 2
+ assert data_end_idx <= len(row)
+ assert not any(row[ch1_idx:data_end_idx].isna())
+ row_data.extend(row[ch1_idx:data_end_idx])
+ df.loc[idx] = row_data
+ # sanity checks
+ assert len(set(df["model id"])) == len(df["model id"])
+ assert all(df.alignment_file.str.endswith(".fas"))
+ return df.set_index("model id")
+
+
+def _get_modeling_description():
+ """Fixed text for model creation."""
+ return "Model using AlphaFold ('model 3' parameters; pTM monomer version)" \
+ " with a 200 residue gap between the two chains, without templates" \
+ " and without model relaxation"
+
+def _get_protocol_steps_and_software():
+ """Create the list of protocol steps with software and parameters used."""
+ protocol = []
+ # MSA step
+ step = {
+ "method_type": "coevolution MSA",
+ "name": None,
+ "details": "Create paired MSAs for the dimers",
+ }
+ step["input"] = "target_sequences"
+ step["output"] = "MSA"
+ step["software"] = []
+ step["software_parameters"] = {}
+ protocol.append(step)
+
+ # modelling step
+ step = {
+ "method_type": "modeling",
+ "name": None,
+ "details": _get_modeling_description(),
+ }
+ # get input data
+ # Must refer to data already in the JSON, so we try keywords
+ step["input"] = "target_sequences_and_MSA"
+ # get output data
+ # Must refer to existing data, so we try keywords
+ step["output"] = "model"
+ # get software
+ step["software"] = [
+ {
+ "name": "AlphaFold",
+ "classification": "model building",
+ "description": "Structure prediction",
+ "citation": ihm.citations.alphafold2,
+ "location": "https://github.com/deepmind/alphafold",
+ "type": "package",
+ "version": "2.0.0",
+ }]
+ step["software_parameters"] = {}
+ protocol.append(step)
+
+ return protocol
+
+
+def _get_title(gene_name_infos):
+ """Get a title for this modelling experiment."""
+ ranged_gene_names = [f"{gn} ({start_pos}-{end_pos})"
+ for gn, start_pos, end_pos in gene_name_infos]
+ return f"Predicted interaction between {' and '.join(ranged_gene_names)}"
+
+
+def _get_model_group_name():
+ """Get a name for a model group."""
+ return None
+
+
+def _get_sequence(chn):
+ """Get the sequence out of an OST chain incl. '-' for gaps in resnums."""
+ # initialise
+ lst_rn = chn.residues[0].number.num
+ idx = 1
+ sqe = chn.residues[0].one_letter_code
+
+ for res in chn.residues[idx:]:
+ lst_rn += 1
+ while lst_rn != res.number.num:
+ sqe += "-"
+ lst_rn += 1
+ sqe += res.one_letter_code
+ return sqe
+
+
+def _check_sequence(up_ac, sequence):
+ """Verify sequence to only contain standard olc."""
+ ns_aa_pos = [] # positions of non-standard amino acids
+ for i, res in enumerate(sequence):
+ if res not in "ACDEFGHIKLMNPQRSTVWY":
+ if res == "U":
+ _warn_msg(
+ f"Selenocysteine found at position {i+1} of entry "
+ + f"'{up_ac}', this residue may be missing in the "
+ + "model."
+ )
+ ns_aa_pos.append(i)
+ continue
+ raise RuntimeError(
+ "Non-standard aa found in UniProtKB sequence "
+ + f"for entry '{up_ac}': {res}, position {i+1}"
+ )
+ return ns_aa_pos
+
+
+def _get_n_parse_up_entry(up_ac, up_url):
+ """Get data for an UniProtKB entry and parse it."""
+ # This is a simple parser for UniProtKB txt format, instead of breaking it
+ # up into multiple functions, we just allow many many branches & statements,
+ # here.
+ # pylint: disable=too-many-branches,too-many-statements
+ data = {}
+ data["up_organism"] = ""
+ data["up_sequence"] = ""
+ data["up_ac"] = up_ac
+ rspns = requests.get(up_url, timeout=180)
+ for line in rspns.iter_lines(decode_unicode=True):
+ if line.startswith("ID "):
+ sline = line.split()
+ if len(sline) != 5:
+ _abort_msg(f"Unusual UniProtKB ID line found:\n'{line}'")
+ data["up_id"] = sline[1]
+ elif line.startswith("OX NCBI_TaxID="):
+ # Following strictly the UniProtKB format: 'OX NCBI_TaxID=<ID>;'
+ data["up_ncbi_taxid"] = line[len("OX NCBI_TaxID=") : -1]
+ data["up_ncbi_taxid"] = data["up_ncbi_taxid"].split("{")[0].strip()
+ elif line.startswith("OS "):
+ if line[-1] == ".":
+ data["up_organism"] += line[len("OS ") : -1]
+ else:
+ data["up_organism"] += line[len("OS ") : -1] + " "
+ elif line.startswith("SQ "):
+ sline = line.split()
+ if len(sline) != 8:
+ _abort_msg(f"Unusual UniProtKB SQ line found:\n'{line}'")
+ data["up_seqlen"] = int(sline[2])
+ data["up_crc64"] = sline[6]
+ elif line.startswith(" "):
+ sline = line.split()
+ if len(sline) > 6:
+ _abort_msg(
+ "Unusual UniProtKB sequence data line "
+ + f"found:\n'{line}'"
+ )
+ data["up_sequence"] += "".join(sline)
+ elif line.startswith("RP "):
+ if "ISOFORM" in line.upper():
+ RuntimeError(
+ f"First ISOFORM found for '{up_ac}', needs " + "handling."
+ )
+ elif line.startswith("DT "):
+ # 2012-10-03
+ dt_flds = line[len("DT ") :].split(", ")
+ if dt_flds[1].upper().startswith("SEQUENCE VERSION "):
+ data["up_last_mod"] = datetime.datetime.strptime(
+ dt_flds[0], "%d-%b-%Y"
+ )
+ elif dt_flds[1].upper().startswith("ENTRY VERSION "):
+ data["up_entry_version"] = dt_flds[1][len("ENTRY VERSION ") :]
+ if data["up_entry_version"][-1] == ".":
+ data["up_entry_version"] = data["up_entry_version"][:-1]
+ data["up_entry_version"] = int(data["up_entry_version"])
+ elif line.startswith("GN Name="):
+ data["up_gn"] = line[len("GN Name=") :].split(";")[0]
+ data["up_gn"] = data["up_gn"].split("{")[0].strip()
+
+ # we have not seen isoforms in the data set, yet, so we just set them to '.'
+ data["up_isoform"] = None
+
+ if "up_gn" not in data:
+ _warn_msg(
+ f"No gene name found for UniProtKB entry '{up_ac}', using "
+ + "UniProtKB AC instead."
+ )
+ data["up_gn"] = up_ac
+ if "up_last_mod" not in data:
+ _abort_msg(f"No sequence version found for UniProtKB entry '{up_ac}'.")
+ if "up_crc64" not in data:
+ _abort_msg(f"No CRC64 value found for UniProtKB entry '{up_ac}'.")
+ if len(data["up_sequence"]) == 0:
+ _abort_msg(f"No sequence found for UniProtKB entry '{up_ac}'.")
+ # check that sequence length and CRC64 is correct
+ if data["up_seqlen"] != len(data["up_sequence"]):
+ _abort_msg(
+ "Sequence length of SQ line and sequence data differ for "
+ + f"UniProtKB entry '{up_ac}': {data['up_seqlen']} != "
+ + f"{len(data['up_sequence'])}"
+ )
+ data["up_ns_aa"] = _check_sequence(data["up_ac"], data["up_sequence"])
+
+ if "up_id" not in data:
+ _abort_msg(f"No ID found for UniProtKB entry '{up_ac}'.")
+ if "up_ncbi_taxid" not in data:
+ _abort_msg(f"No NCBI taxonomy ID found for UniProtKB entry '{up_ac}'.")
+ if len(data["up_organism"]) == 0:
+ _abort_msg(f"No organism species found for UniProtKB entry '{up_ac}'.")
+ return data
+
+
+def _fetch_upkb_entry(up_ac):
+ """Get an UniProtKB entry."""
+ return _get_n_parse_up_entry(
+ up_ac, f"https://rest.uniprot.org/uniprotkb/{up_ac}.txt"
+ )
+
+
+def _fetch_unisave_entry(up_ac, version):
+ """Get an UniSave entry, in contrast to an UniProtKB entry, that allows us
+ to specify a version."""
+ return _get_n_parse_up_entry(
+ up_ac,
+ f"https://rest.uniprot.org/unisave/{up_ac}?format=txt&"
+ + f"versions={version}",
+ )
+
+
+def _build_and_check_up_aln(up_data, up_start, up_end, ch_seq):
+ # return: aln (UP (name: "up_ac|0-based-offset"), CH) if 100% match,
+ # None else
+ # up_start and up_end expected to be ready for 0-indexed slicing
+ # ch_seq expected to contain gaps to cover same length as up_end - up_start
+ if up_end > len(up_data["up_sequence"]):
+ # skip UP seq. versions with meaningless lengths
+ return None
+ s_up = seq.CreateSequence(f"{up_data['up_ac']}|{up_start}",
+ up_data["up_sequence"][up_start:up_end])
+ s_ch = seq.CreateSequence("ch_seq", ch_seq)
+ aln = seq.CreateAlignment(s_up, s_ch)
+ seq_id = seq.alg.SequenceIdentity(aln) # ignores gaps
+ if seq_id < 100:
+ return None
+ else:
+ return aln
+
+def _build_and_cut_up_aln(up_data, ch_seq):
+ # return: aln (UP (name: "up_ac|0-based-offset"), CH)
+ # cut to remove terminal gaps in CH
+ s_ch = seq.CreateSequence("ch_seq", ch_seq)
+ s_up = seq.CreateSequence("up_seq", up_data["up_sequence"])
+ aln = seq.alg.SemiGlobalAlign(s_up, s_ch, seq.alg.BLOSUM62)[0]
+ # cut to part covered by model and rename
+ offset = aln.sequences[1].first_non_gap
+ aln.Cut(0, aln.sequences[1].first_non_gap)
+ aln.Cut(aln.sequences[1].last_non_gap + 1, len(aln))
+ aln.SetSequenceName(0, f"{up_data['up_ac']}|{offset}")
+ return aln
+
+def _get_upkb_for_sequence(label, up_ac, up_start, up_end, ch_seq, up_id,
+ up_cache={}):
+ # check length
+ if len(ch_seq) != up_end - up_start:
+ raise RuntimeError(f"BAD RES. COUNT FOR {label}")
+ # return matching up_data and aln to latest UP
+ up_data = up_cache.get(up_ac, None)
+ if up_data is None:
+ up_data = _fetch_upkb_entry(up_ac)
+ aln = _build_and_check_up_aln(up_data, up_start, up_end, ch_seq)
+ if aln is None:
+ # keep original version in cache and check other versions until hit
+ up_cache[up_ac + "-latest"] = up_data
+ while aln is None:
+ if up_data["up_entry_version"] > 1:
+ up_data = _fetch_unisave_entry(
+ up_ac, up_data["up_entry_version"] - 1
+ )
+ aln = _build_and_check_up_aln(up_data, up_start, up_end, ch_seq)
+ else:
+ raise RuntimeError(
+ f"Sequences not equal from file: {ch_seq}, from UniProtKB: "
+ f"{up_data['up_sequence']} ({label}), checked entire entry "
+ "history."
+ )
+ # check UP ID
+ if up_id != up_data["up_id"]:
+ raise RuntimeError(f"UP ID MISMATCH for {label}; {up_id} vs {up_data['up_id']}")
+ # keep cached for matched data
+ up_cache[up_ac] = up_data
+ # align to latest sequence if needed
+ if up_ac + "-latest" in up_cache:
+ aln = _build_and_cut_up_aln(up_cache[up_ac + "-latest"], ch_seq)
+ seq_id = seq.alg.SequenceIdentity(aln) # ignores gaps
+ if len(aln) != up_end - up_start or seq_id < 95:
+ raise RuntimeError(
+ f"Failed to align {label} to latest {up_ac}!"
+ f" Lengths {len(aln)} vs {up_end - up_start};"
+ f" seq. id {seq_id}."
+ )
+ return up_data, aln
+
+
+def _get_entities(pdb_file, up_infos):
+ """Gather data for the mmCIF (target) entities."""
+ # up_infos as dict {ch_name: (up_ac, up_start_idx, up_end_idx, up_id)}
+ # -> [up_start_idx:up_end_idx] meant to be for slicing up_sequence
+ entities = []
+ _check_file(pdb_file)
+ ost_ent = io.LoadPDB(pdb_file)
+ # check assumption of dimer
+ if ost_ent.chain_count != len(up_infos):
+ raise RuntimeError(f"UNEXPECTED CHAIN COUNT IN {pdb_file}")
+ # check assumption that none of the PDB files have bfactors
+ unique_b_factors = sorted(set(a.b_factor for a in ost_ent.atoms))
+ if unique_b_factors != [0.0]:
+ raise RuntimeError(f"B-FACTORS SPOTTED IN {pdb_file}: "
+ f"{unique_b_factors}")
+ already_seen = []
+ for chn in ost_ent.chains:
+ cif_ent = {}
+ ch_label = f"{pdb_file}|CH-{chn.name}"
+ up_ac, up_start_idx, up_end_idx, up_id = up_infos[chn.name]
+ up_key = (up_ac, up_start_idx, up_end_idx)
+ sqe_no_gaps = "".join([res.one_letter_code for res in chn.residues])
+ sqe_gaps = _get_sequence(chn)
+ try:
+ e_idx = already_seen.index(up_key)
+ except ValueError:
+ pass
+ else:
+ if sqe_no_gaps != entities[e_idx]["pdb_sequence"]:
+ _abort_msg(
+ "Sequences are different for two chains of the same "
+ "UniProtKB AC. This case is not implemented, yet."
+ )
+ entities[e_idx]["pdb_chain_id"].append(chn.name)
+ continue
+ already_seen.append(up_key)
+ # note: upkb is for matching seq. version, aln is for latest seq.
+ upkb, up_aln = _get_upkb_for_sequence(
+ ch_label, up_ac, up_start_idx, up_end_idx, sqe_gaps,
+ up_id, up_cache
+ )
+ cif_ent["pdb_sequence"] = sqe_no_gaps
+ cif_ent["pdb_seqlen"] = len(sqe_no_gaps)
+ cif_ent["pdb_chain_id"] = [chn.name]
+ cif_ent["description"] = (
+ f"{upkb['up_organism']} {upkb['up_gn']} ({upkb['up_ac']}; "
+ f"{up_start_idx + 1} - {up_end_idx})"
+ )
+ cif_ent["up_aln"] = up_aln
+ # 1-indexed positions for closed interval
+ cif_ent["up_start_pos"] = up_start_idx + 1
+ cif_ent["up_end_pos"] = up_end_idx
+ # alignment didn't check starting position in UP
+ if chn.residues[0].number.num != cif_ent["up_start_pos"]:
+ print(f"UNEXPECTED STARTING RESNUM IN {ch_label}")
+ # mapping between seq_id and auth_seq_id
+ # -> assume same for all chains of this entity
+ # (trivial here as hetero-dimer)
+ cif_ent["auth_seq_id_map"] = {
+ idx+1: res.number.num for idx, res in enumerate(chn.residues)
+ }
+ cif_ent.update(upkb)
+ entities.append(cif_ent)
+ return entities, ost_ent
+
+
+def _get_scores(data, acc_path, cp_name, aln_name):
+ """Check that all files needed to process this model are present."""
+ _check_file(acc_path)
+ with zipfile.ZipFile(acc_path) as zf:
+ if len(zf.namelist()) > 2:
+ print(f"TOO MANY FILES IN ACC {acc_path}")
+ if cp_name not in zf.namelist():
+ raise RuntimeError(f"MISSING NPZ FILE {acc_path}")
+ if aln_name not in zf.namelist():
+ raise RuntimeError(f"MISSING ALN FILE {acc_path}")
+ aln_data = zf.open(aln_name).read()
+ # NOTE: this also checks that all sequences in FASTA have same length
+ aln = io.AlignmentFromString(aln_data, "fasta")
+ cp_data = np.load(zf.open(cp_name))
+ # check aln data
+ # -> should match combined length of gapless chain sequences
+ combined_seq = "".join(trg_ent["pdb_sequence"] \
+ for trg_ent in data["target_entities"])
+ if str(aln.sequences[0]) != combined_seq:
+ raise RuntimeError(f"BAD ALN SEQ {acc_path}")
+ # if aln.sequence_count < 10:
+ # print("SHALLOW ALN", acc_path, aln.sequence_count)
+ # # not an issue really, just curious
+ # check cp data
+ # -> expected pLDDT vector and PAE/CP matrices
+ # -> expected to either have one off diagonal or full matrix
+ seq_lens = [trg_ent["pdb_seqlen"] for trg_ent in data["target_entities"]]
+ assert len(seq_lens) == 2 # only dimers supported here
+ sum_lens = sum(seq_lens)
+ exp_shape_offdiag = (seq_lens[0], seq_lens[1])
+ exp_shape_full = (sum_lens, sum_lens)
+ if len(cp_data) != 3:
+ print(f"UNEXPECTED NUMBER OF ITEMS IN NPZ FILE {acc_path}")
+ if "contact_prob" not in cp_data:
+ raise RuntimeError(f"MISSING CP IN NPZ FILE {acc_path}")
+ cp_matrix = cp_data["contact_prob"]
+ if "predicted_aligned_error" not in cp_data:
+ raise RuntimeError(f"MISSING PAE IN NPZ FILE {acc_path}")
+ pae_matrix = cp_data["predicted_aligned_error"]
+ if cp_matrix.shape == exp_shape_full:
+ # cut matrices
+ cp_matrix = cp_matrix[:seq_lens[0], seq_lens[0]:]
+ pae_matrix = pae_matrix[:seq_lens[0], seq_lens[0]:]
+ elif cp_matrix.shape != exp_shape_offdiag:
+ raise RuntimeError(f"BAD SHAPE OF CP DATA {acc_path}")
+ if pae_matrix.shape != cp_matrix.shape:
+ raise RuntimeError(f"BAD SHAPE OF PAE DATA {acc_path}")
+ if "plddt" not in cp_data:
+ raise RuntimeError(f"MISSING PLDDT IN NPZ FILE {acc_path}")
+ elif cp_data["plddt"].shape != (sum_lens, ):
+ raise RuntimeError(f"BAD SHAPE OF PLDDT DATA {acc_path}")
+ # update data
+ data["plddt"] = cp_data["plddt"]
+ data["pae"] = pae_matrix
+ data["contact_prob"] = cp_matrix
+ data["aln_data"] = aln_data
+
+
+def _get_modelcif_entities(target_ents, asym_units, system):
+ """Create ModelCIF entities and asymmetric units."""
+ for cif_ent in target_ents:
+ mdlcif_ent = modelcif.Entity(
+ # NOTE: here pdb_sequence is what has actually been modelled
+ # -> compared to UP this contains gaps!
+ cif_ent["pdb_sequence"],
+ description=cif_ent["description"],
+ source=ihm.source.Natural(
+ ncbi_taxonomy_id=cif_ent["up_ncbi_taxid"],
+ scientific_name=cif_ent["up_organism"],
+ ),
+ references=[
+ modelcif.reference.UniProt(
+ cif_ent["up_id"],
+ cif_ent["up_ac"],
+ align_begin=cif_ent["up_start_pos"],
+ align_end=cif_ent["up_end_pos"],
+ isoform=cif_ent["up_isoform"],
+ ncbi_taxonomy_id=cif_ent["up_ncbi_taxid"],
+ organism_scientific=cif_ent["up_organism"],
+ sequence_version_date=cif_ent["up_last_mod"],
+ sequence_crc64=cif_ent["up_crc64"],
+ )
+ ],
+ )
+ for pdb_chain_id in cif_ent["pdb_chain_id"]:
+ asym_units[pdb_chain_id] = modelcif.AsymUnit(
+ mdlcif_ent, auth_seq_id_map=cif_ent["auth_seq_id_map"]
+ )
+ system.target_entities.append(mdlcif_ent)
+
+
+def _get_assoc_aln_file(fle_path):
+ """Generate a modelcif.associated.File object pointing to FASTA formatted
+ file containing MSA.
+ """
+ cfile = modelcif.associated.File(
+ fle_path,
+ details="Paired MSAs"
+ )
+ cfile.file_format = "fasta"
+ cfile.file_content = "multiple sequence alignments"
+ return cfile
+
+
+def _get_associated_files(entry_id, mdl_name, add_files):
+ """Create entry for associated files."""
+ # extract local pairwise into extra file
+ ac_file = f"{mdl_name}_local_pairwise_qa.cif"
+ arc_files = [
+ modelcif.associated.LocalPairwiseQAScoresFile(
+ ac_file,
+ categories=["_ma_qa_metric_local_pairwise"],
+ copy_categories=["_ma_qa_metric"],
+ entry_id=entry_id,
+ entry_details="This file is an associated file consisting "
+ + "of local pairwise QA metrics. This is a partial mmCIF "
+ + "file and can be validated by merging with the main "
+ + "mmCIF file containing the model coordinates and other "
+ + "associated data.",
+ details="Predicted aligned error and contact probability",
+ )
+ ]
+ # add any extra files if needed
+ if add_files:
+ arc_files.extend(add_files)
+ # package all into zip file
+ return modelcif.associated.Repository(
+ "",
+ [modelcif.associated.ZipFile(f"{mdl_name}.zip", files=arc_files)],
+ )
+ # NOTE: by convention MA expects zip file with same name as model-cif
+
+
+def _assemble_modelcif_software(soft_dict):
+ """Create a modelcif.Software instance from dictionary."""
+ return modelcif.Software(
+ soft_dict["name"],
+ soft_dict["classification"],
+ soft_dict["description"],
+ soft_dict["location"],
+ soft_dict["type"],
+ soft_dict["version"],
+ citation=soft_dict["citation"],
+ )
+
+
+def _get_modelcif_protocol_software(js_step):
+ """Assemble software entries for a ModelCIF protocol step."""
+ if js_step["software"]:
+ if len(js_step["software"]) == 1:
+ sftwre = _assemble_modelcif_software(js_step["software"][0])
+ else:
+ sftwre = []
+ for sft in js_step["software"]:
+ sftwre.append(_assemble_modelcif_software(sft))
+ sftwre = modelcif.SoftwareGroup(elements=sftwre)
+ if js_step["software_parameters"]:
+ params = []
+ for key, val in js_step["software_parameters"].items():
+ params.append(modelcif.SoftwareParameter(key, val))
+ if isinstance(sftwre, modelcif.SoftwareGroup):
+ sftwre.parameters = params
+ else:
+ sftwre = modelcif.SoftwareGroup(
+ elements=(sftwre,), parameters=params
+ )
+ return sftwre
+ return None
+
+
+def _get_modelcif_protocol_data(data_label, target_entities, aln_data, model):
+ """Assemble data for a ModelCIF protocol step."""
+ if data_label == "target_sequences":
+ data = modelcif.data.DataGroup(target_entities)
+ elif data_label == "MSA":
+ data = aln_data
+ elif data_label == "target_sequences_and_MSA":
+ data = modelcif.data.DataGroup(target_entities)
+ data.append(aln_data)
+ elif data_label == "model":
+ data = model
+ else:
+ raise RuntimeError(f"Unknown protocol data: '{data_label}'")
+ return data
+
+
+def _get_modelcif_protocol(protocol_steps, target_entities, aln_data, model):
+ """Create the protocol for the ModelCIF file."""
+ protocol = modelcif.protocol.Protocol()
+ for js_step in protocol_steps:
+ sftwre = _get_modelcif_protocol_software(js_step)
+ input_data = _get_modelcif_protocol_data(
+ js_step["input"], target_entities, aln_data, model
+ )
+ output_data = _get_modelcif_protocol_data(
+ js_step["output"], target_entities, aln_data, model
+ )
+
+ protocol.steps.append(
+ modelcif.protocol.Step(
+ input_data=input_data,
+ output_data=output_data,
+ name=js_step["name"],
+ details=js_step["details"],
+ software=sftwre,
+ )
+ )
+ protocol.steps[-1].method_type = js_step["method_type"]
+ return protocol
+
+
+def _compress_cif_file(cif_file):
+ """Compress cif file and delete original."""
+ with open(cif_file, "rb") as f_in:
+ with gzip.open(cif_file + ".gz", "wb") as f_out:
+ shutil.copyfileobj(f_in, f_out)
+ os.remove(cif_file)
+
+
+def _package_associated_files(repo):
+ """Compress associated files into single zip file and delete original."""
+ # zip settings tested for good speed vs compression
+ for archive in repo.files:
+ with zipfile.ZipFile(archive.path, "w", zipfile.ZIP_BZIP2) as cif_zip:
+ for zfile in archive.files:
+ cif_zip.write(zfile.path, arcname=zfile.path)
+ os.remove(zfile.path)
+
+
+def _store_as_modelcif(
+ data_json, ost_ent, out_dir, mdl_name, compress, add_files
+):
+ """Mix all the data into a ModelCIF file."""
+ print(" generating ModelCIF objects...", end="")
+ pstart = timer()
+ # create system to gather all the data
+ system = modelcif.System(
+ title=data_json["title"],
+ id=data_json["mdl_id"].upper(),
+ model_details=data_json["model_details"],
+ )
+
+ # add primary citation (HC here but could also fetch via from_pubmed_id)
+ system.citations.append(ihm.Citation(
+ pmid="36261849",
+ title="Computed cancer interactome explains the effects of somatic "
+ "mutations in cancers.",
+ journal="Protein Sci",
+ volume=31,
+ page_range="e4479",
+ year=2022,
+ authors=['Zhang, J.', 'Pei, J.', 'Durham, J.', 'Bos, T.', 'Cong, Q.'],
+ doi="10.1002/pro.4479",
+ is_primary=True,
+ ))
+
+ # create target entities, references, source, asymmetric units & assembly
+ # create an asymmetric unit and an entity per target sequence
+ asym_units = {}
+ _get_modelcif_entities(
+ data_json["target_entities"],
+ asym_units,
+ system,
+ )
+
+ # audit_authors
+ system.authors.extend(data_json["audit_authors"])
+
+ # set up the model to produce coordinates
+ mdl_list_name = "Model 3" # fixed set of params used here
+ model = _OST2ModelCIF(
+ assembly=modelcif.Assembly(asym_units.values()),
+ asym=asym_units,
+ ost_entity=ost_ent,
+ scores_json=data_json,
+ name=mdl_list_name,
+ )
+ print(f" ({timer()-pstart:.2f}s)")
+ print(" processing QA scores...", end="", flush=True)
+ pstart = timer()
+ model.add_scores()
+ print(f" ({timer()-pstart:.2f}s)")
+
+ system.model_groups.append(
+ modelcif.model.ModelGroup([model], name=data_json["model_group_name"])
+ )
+
+ # handle additional files
+ system.repositories.append(
+ _get_associated_files(system.id, mdl_name, add_files)
+ )
+
+ # prepare aln_data info
+ aln_files = [f for f in add_files \
+ if f.file_content == "multiple sequence alignments"]
+ assert len(aln_files) == 1 # no support for multiple one atm
+ aln_file_name = aln_files[0].path
+ aln_data = modelcif.data.Data(
+ "Paired MSA for the dimer",
+ f"MSA stored as {aln_file_name} in accompanying data"
+ )
+
+ system.protocols.append(
+ _get_modelcif_protocol(
+ data_json["protocol"],
+ system.target_entities,
+ aln_data,
+ model,
+ )
+ )
+
+ # write modelcif System to file
+ print(" write to disk...", end="", flush=True)
+ pstart = timer()
+ # NOTE: this will dump PAE on path provided in add_scores
+ # -> hence we cheat by changing path and back while being exception-safe...
+ # -> also we need to write aln file to have it in zip file with rest
+ oldpwd = os.getcwd()
+ os.chdir(out_dir)
+ mdl_fle = f"{mdl_name}.cif"
+ try:
+ with open(mdl_fle, "w", encoding="ascii") as mmcif_fh:
+ modelcif.dumper.write(mmcif_fh, [system])
+ with open(aln_file_name, "wb") as fh:
+ fh.write(data_json["aln_data"])
+ _package_associated_files(system.repositories[0])
+ if compress:
+ _compress_cif_file(mdl_fle)
+ mdl_fle += ".gz"
+ # also output alignments to latest UP
+ for cif_ent in data_json["target_entities"]:
+ ch_names = "-".join(chn for chn in cif_ent["pdb_chain_id"])
+ up_aln_file_name = f"{mdl_name}-UP-ALN-{ch_names}.fasta"
+ io.SaveAlignment(cif_ent["up_aln"], up_aln_file_name)
+ finally:
+ os.chdir(oldpwd)
+ print(f" ({timer()-pstart:.2f}s)")
+ return os.path.join(out_dir, mdl_fle)
+
+
+def _create_interaction_json():
+ """Create a dictionary (mimicking JSON) that contains data which is the same
+ for all models."""
+ data = {}
+ data["audit_authors"] = _get_audit_authors()
+ data["protocol"] = _get_protocol_steps_and_software()
+ return data
+
+
+def _create_model_json(data, pdb_file, metadata):
+ """Create a dictionary (mimicking JSON) that contains all the data."""
+ up_infos = {
+ metadata[f"chain{ch_idx}"]: (
+ metadata[f"chain{ch_idx}_UniProtAC"],
+ int(metadata[f"chain{ch_idx}_startPosi"]) - 1,
+ int(metadata[f"chain{ch_idx}_endPosi"]),
+ metadata[f"chain{ch_idx}_UniProtKB"],
+ ) for ch_idx in [1, 2]
+ }
+ data["target_entities"], ost_ent = _get_entities(pdb_file, up_infos)
+ gns = [(i["up_gn"], i["up_start_pos"], i["up_end_pos"]) \
+ for i in data["target_entities"]]
+ data["title"] = _get_title(gns)
+ data["model_details"] = metadata.overview
+ data["model_group_name"] = _get_model_group_name()
+ return ost_ent
+
+
+def _translate2modelcif(mdl_id, metadata, opts):
+ """Convert a PDB file with its accompanying data to ModelCIF."""
+ pdb_fle = os.path.join(opts.model_dir, mdl_id + ".pdb")
+ acc_path = os.path.join(opts.accompanying_data_dir,
+ mdl_id + "_accompanying_data.zip")
+
+ # gather data into JSON-like structure
+ print(" preparing data...", end="")
+ pstart = timer()
+
+ mdlcf_json = _create_interaction_json()
+ mdlcf_json["mdl_id"] = mdl_id
+
+ ost_ent = _create_model_json(mdlcf_json, pdb_fle, metadata)
+
+ # read quality scores from JSON file
+ _get_scores(
+ mdlcf_json, acc_path,
+ metadata.contact_probility_file,
+ metadata.alignment_file
+ )
+ print(f" ({timer()-pstart:.2f}s)")
+ add_files = [_get_assoc_aln_file(metadata.alignment_file)]
+ mdl_path = _store_as_modelcif(
+ mdlcf_json,
+ ost_ent,
+ opts.out_dir,
+ mdl_id,
+ opts.compress,
+ add_files,
+ )
+ # check if result can be read and has expected seq.
+ ent = io.LoadMMCIF(mdl_path)
+ exp_seqs = [trg_ent["pdb_sequence"] \
+ for trg_ent in mdlcf_json["target_entities"]]
+ assert ent.chain_count == len(exp_seqs), f"Bad chain count {mdl_id}"
+ ent_seq = "".join(res.one_letter_code for res in ent.residues)
+ assert ent_seq == "".join(exp_seqs), f"Bad seq. {mdl_id}"
+
+
+def _main():
+ """Run as script."""
+ opts = _parse_args()
+
+ # parse/fetch global data
+ metadata_full = _get_metadata(opts.metadata_file)
+ if opts.compress:
+ cifext = "cif.gz"
+ else:
+ cifext = "cif"
+ print(f"Working on {opts.metadata_file}...")
+
+ # iterate models
+ # TEST: selected models
+ # for mdl_id in ["O00329-D1_P27986-D2", "O14602_P47813"]:
+ for mdl_id in ["O00329-D1_P27986-D2", "O14602_P47813",
+ "O75376-D12_Q14995-D5", "Q8NFD5-D13_Q92925-D2",
+ "P20248-D2_Q09472-D14", "O14744-D1_Q9Y618-D10",
+ "O00257-D2_Q6W2J9-D8"]:
+ metadata = metadata_full.loc[mdl_id]
+ # for mdl_id, metadata in metadata.iterrows():
+ if os.path.exists(os.path.join(opts.out_dir, f"{mdl_id}.{cifext}")):
+ print(f" {mdl_id} already done...")
+ continue
+ print(f" translating {mdl_id}...")
+ pdb_start = timer()
+ _translate2modelcif(mdl_id, metadata, opts)
+ print(f" ... done with {mdl_id} ({timer()-pdb_start:.2f}s).")
+
+ print(f"... done with {opts.metadata_file}.")
+
+
+if __name__ == "__main__":
+ _main()
+
+# LocalWords: aa pdb
diff --git a/pyproject.toml b/pyproject.toml
index f3328b597187d9a324fbb8a743f5c6c173f72977..33018daba193de3ac421d4ea6d153a058b7b6719 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -8,7 +8,7 @@ reports='no'
# A comma-separated list of package or module names from where C extensions may
# be loaded. Extensions are loading into the active Python interpreter and may
# run arbitrary code
-extension-pkg-allow-list='rapidjson
+extension-pkg-allow-list='rapidjson'
[tool.pylint.FORMAT]
max-line-length=80
diff --git a/validation/Dockerfile b/validation/Dockerfile
index 7ec976fa46679088e7ac4d19cf6cd89245a48892..3f20534318c3205616c989434554e9fb5b4e537f 100644
--- a/validation/Dockerfile
+++ b/validation/Dockerfile
@@ -29,6 +29,7 @@ LABEL vendor3="Biozentrum - University of Basel (biozentrum.unibas.ch)"
## Install the RCSB CPP Dict Suite (only the binaries we need)
WORKDIR ${SRC_DIR}
+COPY requirements.txt ${SRC_DIR}
RUN set -e pipefail; \
export DICT_PACK_SRC_DIR="${SRC_DIR}/cpp-dict-pack.git"; \
apk update; \
@@ -56,6 +57,7 @@ RUN set -e pipefail; \
/usr/local/bin/python -m pip install --upgrade pip; \
/usr/local/bin/python -m pip install mmcif==${VERSION_PY_MMCIF} \
python-rapidjson; \
+ /usr/local/bin/python -m pip install -r requirements.txt; \
#
## Clean up/ remove unnecessary stuff
apk del abuild binutils bison build-base cmake flex git gcc \
diff --git a/validation/requirements.txt b/validation/requirements.txt
new file mode 100644
index 0000000000000000000000000000000000000000..a5f0a8bb8d844b3fb52fb55f783610e4dc860b75
--- /dev/null
+++ b/validation/requirements.txt
@@ -0,0 +1,2 @@
+python-rapidjson==1.9
+validators==0.20.0
diff --git a/validation/validate-mmcif-file.py b/validation/validate-mmcif-file.py
index ad9fab4f9d35ba78aa461b657725d04f3db7b0fc..f5aa7bfabe0d42b9a4b72d45233eea46fa35b1c4 100755
--- a/validation/validate-mmcif-file.py
+++ b/validation/validate-mmcif-file.py
@@ -20,7 +20,9 @@ import sys
import tempfile
import zipfile
+from validators import url as is_url
import rapidjson as json
+import requests
from mmcif.api.DataCategory import DataCategory
@@ -215,12 +217,51 @@ def _get_entry_id(cif_datablock, entry_id_map, datablock_idx):
entry_id_map[row[eidx]] = datablock_idx
+def _download_file(file_url):
+ """Download a file into a temporary file. Mark for deletion on
+ termination"""
+ rspns = requests.get(file_url, stream=True, timeout=600)
+ if rspns.status_code != 200:
+ raise RuntimeError(f"File not found by URL '{file_url}'.")
+
+ dlf = tempfile.TemporaryFile()
+ for chunk in rspns.iter_content(chunk_size=1024):
+ dlf.write(chunk)
+ dlf.seek(0)
+
+ return dlf
+
+
+def _get_assoc_obj(file_or_url, assoc_dir):
+ """Get a path to an associated file. Will download from internet if path
+ is a URL. Downloaded files are automatically hooked up for deletion after
+ the script terminates."""
+ if assoc_dir is None or not os.path.exists(
+ os.path.join(assoc_dir, file_or_url)
+ ):
+ if is_url(file_or_url):
+ return _download_file(file_or_url)
+
+ raise RuntimeError(
+ "Associated file path does not point to actual file or URL: "
+ + f"'{assoc_dir}/{file_or_url}'"
+ )
+
+ return os.path.join(assoc_dir, file_or_url)
+
+
def _unzip_arc_cif(arc_file, cif_file, assoc_dir):
"""Extract a cif file from a ZIP archive."""
assoc_data = []
- with zipfile.ZipFile(os.path.join(assoc_dir, arc_file)) as arc_zip:
+ assoc_obj = _get_assoc_obj(arc_file, assoc_dir)
+ with zipfile.ZipFile(assoc_obj) as arc_zip:
with TextIOWrapper(arc_zip.open(cif_file), encoding="utf-8") as cif_fh:
assoc_data = _read_mmcif(cif_fh)
+ # in case assoc_obj is a temporary file, we need to close
+ try:
+ assoc_obj.close()
+ except AttributeError:
+ pass
return assoc_data
@@ -256,6 +297,9 @@ def _get_associated_files(model_cif_file, assoc_dir):
)
if row[idxs["file_format"]] != "cif":
continue
+ # this should be easy to make reading URLs, using
+ # _get_assoc_obj(row[idxs["file_url"]], assoc_dir) but for now
+ # I have not seen the use case (no web server at hand for testing)
data = _read_mmcif(os.path.join(assoc_dir, row[idxs["file_url"]]))
assoc_files.append((data, row[idxs["entry_id"]]))
# make sure entry_id is matching in associated file!