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    034099f1
    Deprecate calling external dssp program · 034099f1
    Studer Gabriel authored
    Support for DSSP 4.0 (https://github.com/PDB-REDO/dssp) has been
    enabled in commit da57a1f6.
    This worked if CLIBD_MON env var points to some CCP4 related
    compound library. In the example of dssp shipped with Debian
    bullseye, that's not the case. The observation there:
    It works if applied on a PDB file downloaded from RCSB with all bells
    and whistles but it doesn't work if only the fix from the above commit
    is applied. As OpenStructure implements all functionality from DSSP
    (secondary structure and solvent accessibility), the binding to an
    external program has been deprecated. dssp.AssignDSSP still exists,
    but mimics the old behaviour using OpenStructure internal implementations.
    034099f1
    History
    Deprecate calling external dssp program
    Studer Gabriel authored
    Support for DSSP 4.0 (https://github.com/PDB-REDO/dssp) has been
    enabled in commit da57a1f6.
    This worked if CLIBD_MON env var points to some CCP4 related
    compound library. In the example of dssp shipped with Debian
    bullseye, that's not the case. The observation there:
    It works if applied on a PDB file downloaded from RCSB with all bells
    and whistles but it doesn't work if only the fix from the above commit
    is applied. As OpenStructure implements all functionality from DSSP
    (secondary structure and solvent accessibility), the binding to an
    external program has been deprecated. dssp.AssignDSSP still exists,
    but mimics the old behaviour using OpenStructure internal implementations.