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mat.py

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    • Gabriel Studer's avatar
    Move the value assignment of default substitution matrices to c++
    Studer Gabriel authored 
    This allows the easy usage of the alignment algorithms on the c-level.
The storage to the info object has been removed.
    b8c55045
    History
    Gabriel Studer's avatar b8c55045
    History
    mat.py 437 B
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    from ost.seq.alg import SubstWeightMatrix

def _InitMatrix(preset_enum):
  mat = SubstWeightMatrix()
  mat.AssignPreset(preset_enum)
  return mat

BLOSUM45 = _InitMatrix(SubstWeightMatrix.Preset.BLOSUM45)
BLOSUM62 = _InitMatrix(SubstWeightMatrix.Preset.BLOSUM62)
BLOSUM80 = _InitMatrix(SubstWeightMatrix.Preset.BLOSUM80)
BLOSUM100 = _InitMatrix(SubstWeightMatrix.Preset.BLOSUM100)

__all__=['BLOSUM45','BLOSUM62','BLOSUM80','BLOSUM100']