.gitlab-ci.yml

# these are the different stages for our pipelines
# jobs in the same stage run in parallel 
# next stage doesn't start until previous stage finishes with 'OK'
# by now we only do build and test, we could add another stage "deploy" if
# needed
stages:
  - test

# CentOS6 STAGE
test:centos6.6:
  stage: test
  image: centos:6.6
  before_script:
    - echo "Running centos6.6 'before_script'..."
    - yum -y -q -e 0 install tcl
    - yum -y -q -e 0 install glibc-common
    - yum -y -q -e 0 install glibc-devel
    - yum -y -q -e 0 install libjpeg-turbo
    - yum -y -q -e 0 install freetype
    - yum -y -q -e 0 install libpng
    - yum -y -q -e 0 install mesa-libGL-devel
    - yum -y -q -e 0 install mesa-libGLU-devel
    - mkdir -p /scicore/soft/modules
    - ln -s /export/soft/apps/centos6/generic /scicore/soft/apps
    - ln -s /export/soft/modules/centos6/generic/all /scicore/soft/modules
    - source /export/soft/lua_lmod/centos6/lmod/lmod/init/bash
    - module use /scicore/soft/modules/all
    - module load CMake/2.8.12-goolf-1.4.10
    - module load Python/2.7.5-goolf-1.4.10
    - module load OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2
    - module load Eigen/3.2.1-goolf-1.4.10
    - module load numpy/1.9.1-goolf-1.4.10-Python-2.7.5
    - module load Boost/1.53.0-goolf-1.4.10-Python-2.7.5
    - module load OpenMM/6.1-Linux64
    - module load PyQt/4.11.4-goolf-1.4.10-Python-2.7.5
    - module load LibTIFF/4.0.3-goolf-1.4.10
    - module load libpng/1.6.17-goolf-1.4.10
    - module load zlib/1.2.8-goolf-1.4.10
    - module load Perl/5.16.3-goolf-1.4.10
    - module load HH-suite/2.0.16-goolf-1.4.10-Boost-1.53.0
    - echo "... done running centos6.6 'before_script'."
  script:
  - echo "Testing on CentOS 6..."
  - echo "    Building OST..."
  - mkdir build-ci
  - cd build-ci
  - cmake .. -DENABLE_MM=1
             -DOPEN_MM_LIBRARY=$EBROOTOPENMM/lib/libOpenMM.so
             -DOPEN_MM_PLUGIN_DIR=$EBROOTOPENMM/lib/plugins
             -DOPEN_MM_INCLUDE_DIR=$EBROOTOPENMM/include
             -DCOMPILE_TMTOOLS=1
             -DENABLE_GFX=ON
             -DENABLE_GUI=OFF
             -DUSE_NUMPY=1
             -DUSE_RPATH=1
             -DPYTHON_ROOT=$EBROOTPYTHON
             -DEIGEN3_INCLUDE_DIR=$EBROOTEIGEN/include
             -DFFTW_LIBRARY=$EBROOTFFTW/lib/libfftw3f.a
             -DFFTW_INCLUDE_DIR=$EBROOTFFTW/include
             -DBOOST_ROOT=$EBROOTBOOST
             -DQT_QMAKE_EXECUTABLE=$EBROOTQT/bin/qmake
             -DPNG_LIBRARY=$EBROOTLIBPNG/lib/libpng.so
             -DPNG_INCLUDE_DIR=$EBROOTLIBPNG/include
             -DPNG_PNG_INCLUDE_DIR=$EBROOTLIBPNG/include
             -DZLIB_LIBRARY=$EBROOTZLIB/lib/libz.so
             -DZLIB_INCLUDE_DIR=$EBROOTZLIB/include
             -DTIFF_INCLUDE_DIR=$EBROOTLIBTIFF/include
             -DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.so
             -DOPTIMIZE=1
  - make -j 2