diff --git a/modules/bindings/pymod/hhblits3.py b/modules/bindings/pymod/hhblits3.py index 82c632c9e5b33140141dab7ac087ab3c8e27a1b6..8309d1eecf19ee19c6f62aca62b3cd4ea1a76ee9 100644 --- a/modules/bindings/pymod/hhblits3.py +++ b/modules/bindings/pymod/hhblits3.py @@ -523,14 +523,6 @@ class HHblits: def BuildQueryMSA(self, nrdb, options={}, a3m_file=None, assign_ss=True): """Builds the MSA for the query sequence. - This function directly uses hhblits of hhtools. While in theory it would - be possible to do this by PSI-blasting on our own, hhblits is supposed - to be faster. Also it is supposed to prevent alignment corruption. The - alignment corruption is caused by low-scoring terminal alignments that - draw the sequences found by PSI-blast away from the optimum. By removing - these low scoring ends, part of the alignment corruption can be - suppressed. - The produced A3M file can be parsed by :func:`ParseA3M`. If the file was already produced, hhblits is not called again and the existing file path is returned (neglecting the *assign_ss* flag!!!).