From 072f25000e253c3a2297195feaa8f7923853ddc3 Mon Sep 17 00:00:00 2001
From: Gabriel Studer <gabriel.studer@unibas.ch>
Date: Thu, 23 Jul 2020 13:40:42 +0200
Subject: [PATCH] simplify docu
---
modules/bindings/pymod/hhblits3.py | 8 --------
1 file changed, 8 deletions(-)
diff --git a/modules/bindings/pymod/hhblits3.py b/modules/bindings/pymod/hhblits3.py
index 82c632c9e..8309d1eec 100644
--- a/modules/bindings/pymod/hhblits3.py
+++ b/modules/bindings/pymod/hhblits3.py
@@ -523,14 +523,6 @@ class HHblits:
def BuildQueryMSA(self, nrdb, options={}, a3m_file=None, assign_ss=True):
"""Builds the MSA for the query sequence.
- This function directly uses hhblits of hhtools. While in theory it would
- be possible to do this by PSI-blasting on our own, hhblits is supposed
- to be faster. Also it is supposed to prevent alignment corruption. The
- alignment corruption is caused by low-scoring terminal alignments that
- draw the sequences found by PSI-blast away from the optimum. By removing
- these low scoring ends, part of the alignment corruption can be
- suppressed.
-
The produced A3M file can be parsed by :func:`ParseA3M`. If the file was
already produced, hhblits is not called again and the existing file path
is returned (neglecting the *assign_ss* flag!!!).
--
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