From 0a4ced8a8b520e82e3cd2f9f3de53e82c8b36dbb Mon Sep 17 00:00:00 2001
From: Valerio Mariani <valerio.mariani@unibas.ch>
Date: Sat, 8 Jun 2013 14:28:57 +0200
Subject: [PATCH] Removed bundling scripts
---
deployment/linux/README.txt | 7 -
deployment/linux/create_bundle_centos5.py | 163 ----------------------
deployment/linux/create_bundle_centos6.py | 163 ----------------------
deployment/linux/create_bundle_lucid.py | 156 ---------------------
deployment/linux/create_bundle_precise.py | 156 ---------------------
deployment/linux/ldd-rec.pl | 52 -------
6 files changed, 697 deletions(-)
delete mode 100644 deployment/linux/README.txt
delete mode 100644 deployment/linux/create_bundle_centos5.py
delete mode 100644 deployment/linux/create_bundle_centos6.py
delete mode 100644 deployment/linux/create_bundle_lucid.py
delete mode 100644 deployment/linux/create_bundle_precise.py
delete mode 100644 deployment/linux/ldd-rec.pl
diff --git a/deployment/linux/README.txt b/deployment/linux/README.txt
deleted file mode 100644
index 02beeb3f3..000000000
--- a/deployment/linux/README.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-HOW TO USE THE BUNDLE SCRIPTS:
-
-1. Checkout a copy of the OpenStructure repository.
-2. Move to the <OpenStructure folder>/deployment/linux folder and start the create_bundle.py script using python
-3. In <OpenStructure> you'll find a tar.gz file. That's the bundle!
-4. If the process stops without completing, reset the repository with 'git
-reset --hard HEAD' from the top level directory
diff --git a/deployment/linux/create_bundle_centos5.py b/deployment/linux/create_bundle_centos5.py
deleted file mode 100644
index 36aa8a687..000000000
--- a/deployment/linux/create_bundle_centos5.py
+++ /dev/null
@@ -1,163 +0,0 @@
-import os
-import shutil
-import subprocess
-import string
-import sys
-import datetime
-import sip
-import PyQt4
-
-
-# parameters that can be modified
-qt4_plugins_location='/usr/lib/qt47/plugins'
-qt4_qmake_location='/usr/lib/qt47/bin/qmake'
-ssl_crypto_location='/lib/'
-chemlib_dictionary_location='/home/bundler/compounds.chemlib'
-list_of_excluded_libraries=[
-'ld-linux',
-'libexpat',
-'libgcc_s',
-'libglib',
-'cmov',
-'libice',
-'libdl',
-'libGLU',
-'libelf',
-'libpthread',
-'libstdc++',
-'libSM',
-'libX',
-'libg',
-'libGL.so',
-'libfontconfig',
-'libfreetype',
-'libdrm',
-'libxcb',
-'libICE',
-'libnvidia',
-'libc',
-'libuuid'
-]
-
-if len(sys.argv) < 2:
- print 'usage: create_bundle.py additional_label'
- sys.exit()
-
-additional_label=sys.argv[1]
-
-currdir=os.getcwd()
-if currdir.find('deployment')==-1 or currdir.find('linux')==-1:
- print '\n'
- print 'ERROR: Please run this script from the deployment/linux directory'
- print '\n'
- sys.exit()
-
-print "WARNING: If this script does not run to completion, please run 'git reset --hard HEAD' in the main directory (two up from here) before restarting"
-
-system_python_version=sys.version_info
-system_python_executable='python'+str(system_python_version[0])+'.'+str(system_python_version[1])
-system_python_bin='/usr/bin/'+system_python_executable
-system_python_libs='/usr/lib/'+system_python_executable
-qt4_module_location=os.path.dirname(PyQt4.__file__)
-sip_module_location=os.path.dirname(sip.__file__)
-print '\n'
-print '\n'
-print 'Detecting architecture and revision'
-uname_output=subprocess.Popen('uname -a', shell=True, cwd='../../',stdout=subprocess.PIPE).stdout
-uname_line=uname_output.readlines()
-if uname_line[0].find('x86_64') !=-1:
- libdir='lib64'
- archstring='64bit'
-else:
- libdir='lib'
- archstring='32bit'
-directory_name='openstructure-linux-'+archstring+'-'+additional_label
-print 'Hardcoding package python binary path in openstructure executables'
-subprocess.call('rm -f scripts/ost_config.in.pre* scripts/ost_config.in.backup',shell=True,cwd='../../')
-subprocess.call('mv scripts/ost_config.in scripts/ost_config.in.backup',shell=True,cwd='../../')
-subprocess.call('sed "s/@PYTHON_BINARY@/\$DNG_ROOT\/bin\/python/g" scripts/ost_config.in.backup > scripts/ost_config.in.prepreprepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export PYTHONHOME/ export PYTHONHOME/g" scripts/ost_config.in.prepreprepre > scripts/ost_config.in.preprepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export PYTHONPATH/ export PYTHONPATH/g" scripts/ost_config.in.preprepre > scripts/ost_config.in.prepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#unset PYTHONPATH/ unset PYTHONPATH/g" scripts/ost_config.in.prepre > scripts/ost_config.in.pre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export QT_PLUGIN_PATH/ export QT_PLUGIN_PATH/g" scripts/ost_config.in.pre > scripts/ost_config.in',shell=True,cwd='../../')
-print 'Compiling Openstructure'
-subprocess.call('cmake ./ -DCMAKE_BUILD_TYPE=Release -DQT_QMAKE_EXECUTABLE='+qt4_qmake_location+' -DPREFIX='+directory_name+' -DCOMPOUND_LIB='+chemlib_dictionary_location+' -DENABLE_IMG=ON -DUSE_RPATH=ON -DENABLE_GUI=ON -DENABLE_GFX=ON -DOPTIMIZE=ON',shell=True,cwd='../../')
-subprocess.call('make -j2',shell=True,cwd='../../')
-print 'Removing obsolete packages and package directory'
-subprocess.call('rm -fr openstructure-linux*',shell=True,cwd='../../')
-print 'Creating new package directory'
-subprocess.call('mkdir '+directory_name,shell=True,cwd='../../')
-subprocess.call('mkdir '+directory_name+'/bin',shell=True,cwd='../../')
-print 'Copy python executable into stage for dependency detection'
-subprocess.call('cp '+system_python_bin+ ' stage/bin/python',shell=True,cwd='../../')
-print 'Copy python libraries into the stage for dependency detection'
-subprocess.call('cp -pRL '+system_python_libs+' stage/'+libdir+'/',shell=True,cwd='../../')
-subprocess.call('rm -fr stage/'+libdir+'/'+system_python_executable+'/dist-packages',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+sip_module_location+'/sip* stage/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+qt4_module_location+' stage/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-print 'Copy boost program option libraries into the stage for dependency detection'
-subprocess.call('cp -pRL /usr/lib/libboost_program_options.so* stage/'+libdir+'/',shell=True,cwd='../../')
-print 'Creating new dependency list'
-so_list=[]
-walk_list=os.walk('../../stage')
-for dir_entry in walk_list:
- for file_entry in dir_entry[2]:
- if file_entry.find('.so')==len(file_entry)-3 or file_entry=='gosty':
- filepath=os.path.join(dir_entry[0],file_entry)
- so_list.append(filepath)
-dep_list=[]
-for so_entry in so_list:
- dep=subprocess.Popen('perl ./ldd-rec.pl '+so_entry,shell=True,stdout=subprocess.PIPE,cwd='./').stdout
- dep_so_entry=dep.readlines()
- for dep_entry in dep_so_entry:
- dep_list.append(dep_entry[:-1])
-sorted_dep_list=sorted(list(set(dep_list)))
-print 'Filtering system libraries from depenedency list'
-filtered_dep_list=[]
-for entry in sorted_dep_list:
- exclude=False
- for exclusion in list_of_excluded_libraries:
- if entry.find(exclusion)!=-1:
- exclude=True
- if exclude==False:
- filtered_dep_list.append(entry)
-print 'Installing OpenStructure into package directory structure'
-subprocess.call('make install',shell=True,cwd='../../')
-print 'Copy libraries in the package directory structure'
-for entry in filtered_dep_list:
- subprocess.call('cp '+entry+' '+directory_name+'/'+libdir,shell=True,cwd='../../')
-print 'Copy python executable into package directory structure'
-subprocess.call('cp '+system_python_bin+ ' '+directory_name+'/bin/python',shell=True,cwd='../../')
-print 'Copy python libraries into package directory structure'
-subprocess.call('cp -pRL '+system_python_libs+'/* '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('rm -fr '+directory_name+'/'+libdir+'/'+system_python_executable+'/dist-packages',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+sip_module_location+'/sip* '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+qt4_module_location+' '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-print 'Copy Qt 4 plugins into package directory structure'
-subprocess.call('cp -pRL '+qt4_plugins_location+' '+directory_name+'/bin/',shell=True,cwd='../../')
-print 'Copying supplementary material into package directory structure'
-subprocess.call('cp -pRL stage/share/openstructure '+directory_name+'/share/',shell=True,cwd='../../')
-print 'Copying examples into package directory structure'
-subprocess.call('cp -pRL examples '+directory_name+'/share/openstructure/',shell=True,cwd='../../')
-print 'Copying ReadMe file into package directory structure'
-subprocess.call('cp deployment/README.html '+directory_name,shell=True,cwd='../../')
-print 'Creating executables at the top level of the package directory structure'
-subprocess.call('ln -sf bin/dng ./dng',shell=True,cwd='../../'+directory_name)
-subprocess.call('ln -sf bin/ost ./ost',shell=True,cwd='../../'+directory_name)
-subprocess.call('ln -sf bin/lddt ./lddt',shell=True,cwd='../../'+directory_name)
-print 'Copying additional libraries in the package directory structure'
-subprocess.call('cp '+ssl_crypto_location+'/libssl.so* '+directory_name+'/'+libdir,shell=True,cwd='../../')
-subprocess.call('cp '+ssl_crypto_location+'/libcrypto.so* '+directory_name+'/'+libdir,shell=True,cwd='../../')
-subprocess.call('cp -pRL /usr/lib/libboost_program_options.so* '+directory_name+'/'+libdir+'/',shell=True,cwd='../../')
-print 'Copying python headers in the package directory structure'
-subprocess.call('mkdir -p '+directory_name+'/local/include/',shell=True,cwd='../../')
-subprocess.call('cp -r /usr/include/'+system_python_executable+' '+directory_name+'/local/include/',shell=True,cwd='../../')
-print 'Stripping pyc files from bundle'
-subprocess.call('rm -rf $(find . -name *.pyc)',shell=True,cwd='../../')
-print 'removing dokk and harmony examples from bundle'
-subprocess.call('rm -rf '+directory_name+'/share/openstructure/examples/code_fragments/dokk',shell=True,cwd='../../')
-subprocess.call('rm -rf '+directory_name+'/share/openstructure/examples/code_fragments/harmony',shell=True,cwd='../../')
-print 'Compressing the bundle'
-subprocess.call('tar cfz '+directory_name+'.tgz '+directory_name,shell=True,cwd='../../')
-print "Done. Please run 'git reset --hard HEAD' in the top directory before restarting."
-
diff --git a/deployment/linux/create_bundle_centos6.py b/deployment/linux/create_bundle_centos6.py
deleted file mode 100644
index cfb266967..000000000
--- a/deployment/linux/create_bundle_centos6.py
+++ /dev/null
@@ -1,163 +0,0 @@
-import os
-import shutil
-import subprocess
-import string
-import sys
-import datetime
-import sip
-import PyQt4
-
-
-# parameters that can be modified
-qt4_plugins_location='/usr/lib/qt4/plugins'
-qt4_qmake_location='/usr/lib/qt4/bin/qmake'
-ssl_crypto_location='/usr/lib/'
-chemlib_dictionary_location='/home/bundler/compounds.chemlib'
-list_of_excluded_libraries=[
-'ld-linux',
-'libexpat',
-'libgcc_s',
-'libglib',
-'cmov',
-'libice',
-'libdl',
-'libGLU',
-'libelf',
-'libpthread',
-'libstdc++',
-'libSM',
-'libX',
-'libg',
-'libGL.so',
-'libfontconfig',
-'libfreetype',
-'libdrm',
-'libxcb',
-'libICE',
-'libnvidia',
-'libc',
-'libuuid'
-]
-
-if len(sys.argv) < 2:
- print 'usage: create_bundle.py additional_label'
- sys.exit()
-
-additional_label=sys.argv[1]
-
-currdir=os.getcwd()
-if currdir.find('deployment')==-1 or currdir.find('linux')==-1:
- print '\n'
- print 'ERROR: Please run this script from the deployment/linux directory'
- print '\n'
- sys.exit()
-
-print "WARNING: If this script does not run to completion, please run 'git reset --hard HEAD' in the main directory (two up from here) before restarting"
-
-system_python_version=sys.version_info
-system_python_executable='python'+str(system_python_version[0])+'.'+str(system_python_version[1])
-system_python_bin='/usr/bin/'+system_python_executable
-system_python_libs='/usr/lib/'+system_python_executable
-qt4_module_location=os.path.dirname(PyQt4.__file__)
-sip_module_location=os.path.dirname(sip.__file__)
-print '\n'
-print '\n'
-print 'Detecting architecture and revision'
-uname_output=subprocess.Popen('uname -a', shell=True, cwd='../../',stdout=subprocess.PIPE).stdout
-uname_line=uname_output.readlines()
-if uname_line[0].find('x86_64') !=-1:
- libdir='lib64'
- archstring='64bit'
-else:
- libdir='lib'
- archstring='32bit'
-directory_name='openstructure-linux-'+archstring+'-'+additional_label
-print 'Hardcoding package python binary path in openstructure executables'
-subprocess.call('rm -f scripts/ost_config.in.pre* scripts/ost_config.in.backup',shell=True,cwd='../../')
-subprocess.call('mv scripts/ost_config.in scripts/ost_config.in.backup',shell=True,cwd='../../')
-subprocess.call('sed "s/@PYTHON_BINARY@/\$DNG_ROOT\/bin\/python/g" scripts/ost_config.in.backup > scripts/ost_config.in.prepreprepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export PYTHONHOME/ export PYTHONHOME/g" scripts/ost_config.in.prepreprepre > scripts/ost_config.in.preprepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export PYTHONPATH/ export PYTHONPATH/g" scripts/ost_config.in.preprepre > scripts/ost_config.in.prepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#unset PYTHONPATH/ unset PYTHONPATH/g" scripts/ost_config.in.prepre > scripts/ost_config.in.pre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export QT_PLUGIN_PATH/ export QT_PLUGIN_PATH/g" scripts/ost_config.in.pre > scripts/ost_config.in',shell=True,cwd='../../')
-print 'Compiling Openstructure'
-subprocess.call('cmake ./ -DCMAKE_BUILD_TYPE=Release -DQT_QMAKE_EXECUTABLE='+qt4_qmake_location+' -DPREFIX='+directory_name+' -DCOMPOUND_LIB='+chemlib_dictionary_location+' -DENABLE_IMG=ON -DUSE_RPATH=ON -DENABLE_GUI=ON -DENABLE_GFX=ON -DOPTIMIZE=ON',shell=True,cwd='../../')
-subprocess.call('make -j2',shell=True,cwd='../../')
-print 'Removing obsolete packages and package directory'
-subprocess.call('rm -fr openstructure-linux*',shell=True,cwd='../../')
-print 'Creating new package directory'
-subprocess.call('mkdir '+directory_name,shell=True,cwd='../../')
-subprocess.call('mkdir '+directory_name+'/bin',shell=True,cwd='../../')
-print 'Copy python executable into stage for dependency detection'
-subprocess.call('cp '+system_python_bin+ ' stage/bin/python',shell=True,cwd='../../')
-print 'Copy python libraries into the stage for dependency detection'
-subprocess.call('cp -pRL '+system_python_libs+' stage/'+libdir+'/',shell=True,cwd='../../')
-subprocess.call('rm -fr stage/'+libdir+'/'+system_python_executable+'/dist-packages',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+sip_module_location+'/sip* stage/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+qt4_module_location+' stage/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-print 'Copy boost program option libraries into the stage for dependency detection'
-subprocess.call('cp -pRL /usr/lib/libboost_program_options.so* stage/'+libdir+'/',shell=True,cwd='../../')
-print 'Creating new dependency list'
-so_list=[]
-walk_list=os.walk('../../stage')
-for dir_entry in walk_list:
- for file_entry in dir_entry[2]:
- if file_entry.find('.so')==len(file_entry)-3 or file_entry=='gosty':
- filepath=os.path.join(dir_entry[0],file_entry)
- so_list.append(filepath)
-dep_list=[]
-for so_entry in so_list:
- dep=subprocess.Popen('perl ./ldd-rec.pl '+so_entry,shell=True,stdout=subprocess.PIPE,cwd='./').stdout
- dep_so_entry=dep.readlines()
- for dep_entry in dep_so_entry:
- dep_list.append(dep_entry[:-1])
-sorted_dep_list=sorted(list(set(dep_list)))
-print 'Filtering system libraries from depenedency list'
-filtered_dep_list=[]
-for entry in sorted_dep_list:
- exclude=False
- for exclusion in list_of_excluded_libraries:
- if entry.find(exclusion)!=-1:
- exclude=True
- if exclude==False:
- filtered_dep_list.append(entry)
-print 'Installing OpenStructure into package directory structure'
-subprocess.call('make install',shell=True,cwd='../../')
-print 'Copy libraries in the package directory structure'
-for entry in filtered_dep_list:
- subprocess.call('cp '+entry+' '+directory_name+'/'+libdir,shell=True,cwd='../../')
-print 'Copy python executable into package directory structure'
-subprocess.call('cp '+system_python_bin+ ' '+directory_name+'/bin/python',shell=True,cwd='../../')
-print 'Copy python libraries into package directory structure'
-subprocess.call('cp -pRL '+system_python_libs+'/* '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('rm -fr '+directory_name+'/'+libdir+'/'+system_python_executable+'/dist-packages',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+sip_module_location+'/sip* '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+qt4_module_location+' '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-print 'Copy Qt 4 plugins into package directory structure'
-subprocess.call('cp -pRL '+qt4_plugins_location+' '+directory_name+'/bin/',shell=True,cwd='../../')
-print 'Copying supplementary material into package directory structure'
-subprocess.call('cp -pRL stage/share/openstructure '+directory_name+'/share/',shell=True,cwd='../../')
-print 'Copying examples into package directory structure'
-subprocess.call('cp -pRL examples '+directory_name+'/share/openstructure/',shell=True,cwd='../../')
-print 'Copying ReadMe file into package directory structure'
-subprocess.call('cp deployment/README.html '+directory_name,shell=True,cwd='../../')
-print 'Creating executables at the top level of the package directory structure'
-subprocess.call('ln -sf bin/dng ./dng',shell=True,cwd='../../'+directory_name)
-subprocess.call('ln -sf bin/ost ./ost',shell=True,cwd='../../'+directory_name)
-subprocess.call('ln -sf bin/lddt ./lddt',shell=True,cwd='../../'+directory_name)
-print 'Copying additional libraries in the package directory structure'
-subprocess.call('cp '+ssl_crypto_location+'/libssl.so* '+directory_name+'/'+libdir,shell=True,cwd='../../')
-subprocess.call('cp '+ssl_crypto_location+'/libcrypto.so* '+directory_name+'/'+libdir,shell=True,cwd='../../')
-subprocess.call('cp -pRL /usr/lib/libboost_program_options.so* '+directory_name+'/'+libdir+'/',shell=True,cwd='../../')
-print 'Copying python headers in the package directory structure'
-subprocess.call('mkdir -p '+directory_name+'/local/include/',shell=True,cwd='../../')
-subprocess.call('cp -r /usr/include/'+system_python_executable+' '+directory_name+'/local/include/',shell=True,cwd='../../')
-print 'Stripping pyc files from bundle'
-subprocess.call('rm -rf $(find . -name *.pyc)',shell=True,cwd='../../')
-print 'removing dokk and harmony examples from bundle'
-subprocess.call('rm -rf '+directory_name+'/share/openstructure/examples/code_fragments/dokk',shell=True,cwd='../../')
-subprocess.call('rm -rf '+directory_name+'/share/openstructure/examples/code_fragments/harmony',shell=True,cwd='../../')
-print 'Compressing the bundle'
-subprocess.call('tar cfz '+directory_name+'.tgz '+directory_name,shell=True,cwd='../../')
-print "Done. Please run 'git reset --hard HEAD' in the top directory before restarting."
-
diff --git a/deployment/linux/create_bundle_lucid.py b/deployment/linux/create_bundle_lucid.py
deleted file mode 100644
index 17e6b1a44..000000000
--- a/deployment/linux/create_bundle_lucid.py
+++ /dev/null
@@ -1,156 +0,0 @@
-import os
-import shutil
-import subprocess
-import string
-import sys
-import datetime
-import sip
-import PyQt4
-
-
-# parameters that can be modified
-qt4_plugins_location='/usr/lib/qt4/plugins'
-ssl_crypto_location='/lib/'
-chemlib_dictionary_location='/home/bundler/compounds.chemlib'
-list_of_excluded_libraries=[
-'ld-linux',
-'libexpat',
-'libgcc_s',
-'libglib',
-'cmov',
-'libice',
-'libSM',
-'libX',
-'libg',
-'libGL.so',
-'libfontconfig',
-'libfreetype',
-'libdrm',
-'libxcb',
-'libICE',
-'libnvidia',
-'libc'
-]
-
-if len(sys.argv) < 2:
- print 'usage: create_bundle.py additional_label'
- sys.exit()
-
-additional_label=sys.argv[1]
-
-currdir=os.getcwd()
-if currdir.find('deployment')==-1 or currdir.find('linux')==-1:
- print '\n'
- print 'ERROR: Please run this script from the deployment/linux directory'
- print '\n'
- sys.exit()
-
-print "WARNING: If this script does not run to completion, please run 'git reset --hard HEAD' in the main directory (two up from here) before restarting"
-
-system_python_version=sys.version_info
-system_python_executable='python'+str(system_python_version[0])+'.'+str(system_python_version[1])
-system_python_bin='/usr/bin/'+system_python_executable
-system_python_libs='/usr/lib/'+system_python_executable
-qt4_module_location=os.path.dirname(PyQt4.__file__)
-sip_module_location=os.path.dirname(sip.__file__)
-print '\n'
-print '\n'
-print 'Detecting architecture and revision'
-uname_output=subprocess.Popen('uname -a', shell=True, cwd='../../',stdout=subprocess.PIPE).stdout
-uname_line=uname_output.readlines()
-if uname_line[0].find('x86_64') !=-1:
- libdir='lib64'
- archstring='64bit'
-else:
- libdir='lib'
- archstring='32bit'
-directory_name='openstructure-linux-'+archstring+'-'+additional_label
-print 'Hardcoding package python binary path in openstructure executables'
-subprocess.call('rm -f scripts/ost_config.in.pre* scripts/ost_config.in.backup',shell=True,cwd='../../')
-subprocess.call('mv scripts/ost_config.in scripts/ost_config.in.backup',shell=True,cwd='../../')
-subprocess.call('sed "s/@PYTHON_BINARY@/\$DNG_ROOT\/bin\/python/g" scripts/ost_config.in.backup > scripts/ost_config.in.prepreprepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export PYTHONHOME/ export PYTHONHOME/g" scripts/ost_config.in.prepreprepre > scripts/ost_config.in.preprepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export PYTHONPATH/ export PYTHONPATH/g" scripts/ost_config.in.preprepre > scripts/ost_config.in.prepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#unset PYTHONPATH/ unset PYTHONPATH/g" scripts/ost_config.in.prepre > scripts/ost_config.in.pre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export QT_PLUGIN_PATH/ export QT_PLUGIN_PATH/g" scripts/ost_config.in.pre > scripts/ost_config.in',shell=True,cwd='../../')
-print 'Compiling Openstructure'
-subprocess.call('cmake ./ -DCMAKE_BUILD_TYPE=Release -DPREFIX='+directory_name+' -DCOMPOUND_LIB='+chemlib_dictionary_location+' -DENABLE_IMG=ON -DUSE_RPATH=ON -DENABLE_GUI=ON -DENABLE_GFX=ON -DOPTIMIZE=ON',shell=True,cwd='../../')
-subprocess.call('make -j2',shell=True,cwd='../../')
-print 'Removing obsolete packages and package directory'
-subprocess.call('rm -fr openstructure-linux*',shell=True,cwd='../../')
-print 'Creating new package directory'
-subprocess.call('mkdir '+directory_name,shell=True,cwd='../../')
-subprocess.call('mkdir '+directory_name+'/bin',shell=True,cwd='../../')
-print 'Copy python executable into stage for dependency detection'
-subprocess.call('cp '+system_python_bin+ ' stage/bin/python',shell=True,cwd='../../')
-print 'Copy python libraries into the stage for dependency detection'
-subprocess.call('cp -pRL '+system_python_libs+' stage/'+libdir+'/',shell=True,cwd='../../')
-subprocess.call('rm -fr stage/'+libdir+'/'+system_python_executable+'/dist-packages',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+sip_module_location+'/sip* stage/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+qt4_module_location+' stage/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-print 'Copy boost program option libraries into the stage for dependency detection'
-subprocess.call('cp -pRL /usr/lib/libboost_program_options.so* stage/'+libdir+'/',shell=True,cwd='../../')
-print 'Creating new dependency list'
-so_list=[]
-walk_list=os.walk('../../stage')
-for dir_entry in walk_list:
- for file_entry in dir_entry[2]:
- if file_entry.find('.so')==len(file_entry)-3 or file_entry=='gosty':
- filepath=os.path.join(dir_entry[0],file_entry)
- so_list.append(filepath)
-dep_list=[]
-for so_entry in so_list:
- dep=subprocess.Popen('perl ./ldd-rec.pl '+so_entry,shell=True,stdout=subprocess.PIPE,cwd='./').stdout
- dep_so_entry=dep.readlines()
- for dep_entry in dep_so_entry:
- dep_list.append(dep_entry[:-1])
-sorted_dep_list=sorted(list(set(dep_list)))
-print 'Filtering system libraries from depenedency list'
-filtered_dep_list=[]
-for entry in sorted_dep_list:
- exclude=False
- for exclusion in list_of_excluded_libraries:
- if entry.find(exclusion)!=-1:
- exclude=True
- if exclude==False:
- filtered_dep_list.append(entry)
-print 'Installing OpenStructure into package directory structure'
-subprocess.call('make install',shell=True,cwd='../../')
-print 'Copy libraries in the package directory structure'
-for entry in filtered_dep_list:
- subprocess.call('cp '+entry+' '+directory_name+'/'+libdir,shell=True,cwd='../../')
-print 'Copy python executable into package directory structure'
-subprocess.call('cp '+system_python_bin+ ' '+directory_name+'/bin/python',shell=True,cwd='../../')
-print 'Copy python libraries into package directory structure'
-subprocess.call('cp -pRL '+system_python_libs+'/* '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('rm -fr '+directory_name+'/'+libdir+'/'+system_python_executable+'/dist-packages',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+sip_module_location+'/sip* '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+qt4_module_location+' '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-print 'Copy Qt 4 plugins into package directory structure'
-subprocess.call('cp -pRL '+qt4_plugins_location+' '+directory_name+'/bin/',shell=True,cwd='../../')
-print 'Copying supplementary material into package directory structure'
-subprocess.call('cp -pRL stage/share/openstructure '+directory_name+'/share/',shell=True,cwd='../../')
-print 'Copying examples into package directory structure'
-subprocess.call('cp -pRL examples '+directory_name+'/share/openstructure/',shell=True,cwd='../../')
-print 'Copying ReadMe file into package directory structure'
-subprocess.call('cp deployment/README.html '+directory_name,shell=True,cwd='../../')
-print 'Creating executables at the top level of the package directory structure'
-subprocess.call('ln -sf bin/dng ./dng',shell=True,cwd='../../'+directory_name)
-subprocess.call('ln -sf bin/ost ./ost',shell=True,cwd='../../'+directory_name)
-subprocess.call('ln -sf bin/lddt ./lddt',shell=True,cwd='../../'+directory_name)
-print 'Copying additional libraries in the package directory structure'
-subprocess.call('cp '+ssl_crypto_location+'/libssl.so* '+directory_name+'/'+libdir,shell=True,cwd='../../')
-subprocess.call('cp '+ssl_crypto_location+'/libcrypto.so* '+directory_name+'/'+libdir,shell=True,cwd='../../')
-subprocess.call('cp -pRL /usr/lib/libboost_program_options.so* '+directory_name+'/'+libdir+'/',shell=True,cwd='../../')
-print 'Copying python headers in the package directory structure'
-subprocess.call('mkdir -p '+directory_name+'/local/include/',shell=True,cwd='../../')
-subprocess.call('cp -r /usr/include/'+system_python_executable+' '+directory_name+'/local/include/',shell=True,cwd='../../')
-print 'Stripping pyc files from bundle'
-subprocess.call('rm -rf $(find . -name *.pyc)',shell=True,cwd='../../')
-print 'removing dokk and harmony examples from bundle'
-subprocess.call('rm -rf '+directory_name+'/share/openstructure/examples/code_fragments/dokk',shell=True,cwd='../../')
-subprocess.call('rm -rf '+directory_name+'/share/openstructure/examples/code_fragments/harmony',shell=True,cwd='../../')
-print 'Compressing the bundle'
-subprocess.call('tar cfz '+directory_name+'.tgz '+directory_name,shell=True,cwd='../../')
-print "Done. Please run 'git reset --hard HEAD' in the top directory before restarting."
-
diff --git a/deployment/linux/create_bundle_precise.py b/deployment/linux/create_bundle_precise.py
deleted file mode 100644
index 1bde046d6..000000000
--- a/deployment/linux/create_bundle_precise.py
+++ /dev/null
@@ -1,156 +0,0 @@
-import os
-import shutil
-import subprocess
-import string
-import sys
-import datetime
-import sip
-import PyQt4
-
-
-# parameters that can be modified
-qt4_plugins_location='/usr/lib/i386-linux-gnu/qt4/plugins'
-ssl_crypto_location='/lib/i386-linux-gnu/'
-chemlib_dictionary_location='/home/bundler/compounds.chemlib'
-list_of_excluded_libraries=[
-'ld-linux',
-'libexpat',
-'libgcc_s',
-'libglib',
-'cmov',
-'libice',
-'libSM',
-'libX',
-'libg',
-'libGL.so',
-'libfontconfig',
-'libfreetype',
-'libdrm',
-'libxcb',
-'libICE',
-'libnvidia',
-'libc'
-]
-
-if len(sys.argv) < 2:
- print 'usage: create_bundle.py additional_label'
- sys.exit()
-
-additional_label=sys.argv[1]
-
-currdir=os.getcwd()
-if currdir.find('deployment')==-1 or currdir.find('linux')==-1:
- print '\n'
- print 'ERROR: Please run this script from the deployment/linux directory'
- print '\n'
- sys.exit()
-
-print "WARNING: If this script does not run to completion, please run 'git reset --hard HEAD' in the main directory (two up from here) before restarting"
-
-system_python_version=sys.version_info
-system_python_executable='python'+str(system_python_version[0])+'.'+str(system_python_version[1])
-system_python_bin='/usr/bin/'+system_python_executable
-system_python_libs='/usr/lib/'+system_python_executable
-qt4_module_location=os.path.dirname(PyQt4.__file__)
-sip_module_location=os.path.dirname(sip.__file__)
-print '\n'
-print '\n'
-print 'Detecting architecture and revision'
-uname_output=subprocess.Popen('uname -a', shell=True, cwd='../../',stdout=subprocess.PIPE).stdout
-uname_line=uname_output.readlines()
-if uname_line[0].find('x86_64') !=-1:
- libdir='lib64'
- archstring='64bit'
-else:
- libdir='lib'
- archstring='32bit'
-directory_name='openstructure-linux-'+archstring+'-'+additional_label
-print 'Hardcoding package python binary path in openstructure executables'
-subprocess.call('rm -f scripts/ost_config.in.pre* scripts/ost_config.in.backup',shell=True,cwd='../../')
-subprocess.call('mv scripts/ost_config.in scripts/ost_config.in.backup',shell=True,cwd='../../')
-subprocess.call('sed "s/@PYTHON_BINARY@/\$DNG_ROOT\/bin\/python/g" scripts/ost_config.in.backup > scripts/ost_config.in.prepreprepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export PYTHONHOME/ export PYTHONHOME/g" scripts/ost_config.in.prepreprepre > scripts/ost_config.in.preprepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export PYTHONPATH/ export PYTHONPATH/g" scripts/ost_config.in.preprepre > scripts/ost_config.in.prepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#unset PYTHONPATH/ unset PYTHONPATH/g" scripts/ost_config.in.prepre > scripts/ost_config.in.pre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export QT_PLUGIN_PATH/ export QT_PLUGIN_PATH/g" scripts/ost_config.in.pre > scripts/ost_config.in',shell=True,cwd='../../')
-print 'Compiling Openstructure'
-subprocess.call('cmake ./ -DCMAKE_BUILD_TYPE=Release -DPREFIX='+directory_name+' -DCOMPOUND_LIB='+chemlib_dictionary_location+' -DUSE_RPATH=ON -DENABLE_IMG=ON -DENABLE_GUI=ON -DENABLE_GFX=ON -DOPTIMIZE=ON',shell=True,cwd='../../')
-subprocess.call('make -j2',shell=True,cwd='../../')
-print 'Removing obsolete packages and package directory'
-subprocess.call('rm -fr openstructure-linux*',shell=True,cwd='../../')
-print 'Creating new package directory'
-subprocess.call('mkdir '+directory_name,shell=True,cwd='../../')
-subprocess.call('mkdir '+directory_name+'/bin',shell=True,cwd='../../')
-print 'Copy python executable into stage for dependency detection'
-subprocess.call('cp '+system_python_bin+ ' stage/bin/python',shell=True,cwd='../../')
-print 'Copy python libraries into the stage for dependency detection'
-subprocess.call('cp -pRL '+system_python_libs+' stage/'+libdir+'/',shell=True,cwd='../../')
-subprocess.call('rm -fr stage/'+libdir+'/'+system_python_executable+'/dist-packages',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+sip_module_location+'/sip* stage/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+qt4_module_location+' stage/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-print 'Copy boost program option libraries into the stage for dependency detection'
-subprocess.call('cp -pRL /usr/lib/libboost_program_options.so* stage/'+libdir+'/',shell=True,cwd='../../')
-print 'Creating new dependency list'
-so_list=[]
-walk_list=os.walk('../../stage')
-for dir_entry in walk_list:
- for file_entry in dir_entry[2]:
- if file_entry.find('.so')==len(file_entry)-3 or file_entry=='gosty':
- filepath=os.path.join(dir_entry[0],file_entry)
- so_list.append(filepath)
-dep_list=[]
-for so_entry in so_list:
- dep=subprocess.Popen('perl ./ldd-rec.pl '+so_entry,shell=True,stdout=subprocess.PIPE,cwd='./').stdout
- dep_so_entry=dep.readlines()
- for dep_entry in dep_so_entry:
- dep_list.append(dep_entry[:-1])
-sorted_dep_list=sorted(list(set(dep_list)))
-print 'Filtering system libraries from depenedency list'
-filtered_dep_list=[]
-for entry in sorted_dep_list:
- exclude=False
- for exclusion in list_of_excluded_libraries:
- if entry.find(exclusion)!=-1:
- exclude=True
- if exclude==False:
- filtered_dep_list.append(entry)
-print 'Installing OpenStructure into package directory structure'
-subprocess.call('make install',shell=True,cwd='../../')
-print 'Copy libraries in the package directory structure'
-for entry in filtered_dep_list:
- subprocess.call('cp '+entry+' '+directory_name+'/'+libdir,shell=True,cwd='../../')
-print 'Copy python executable into package directory structure'
-subprocess.call('cp '+system_python_bin+ ' '+directory_name+'/bin/python',shell=True,cwd='../../')
-print 'Copy python libraries into package directory structure'
-subprocess.call('cp -pRL '+system_python_libs+'/* '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('rm -fr '+directory_name+'/'+libdir+'/'+system_python_executable+'/dist-packages',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+sip_module_location+'/sip* '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-subprocess.call('cp -pRL '+qt4_module_location+' '+directory_name+'/'+libdir+'/'+system_python_executable+'/',shell=True,cwd='../../')
-print 'Copy Qt 4 plugins into package directory structure'
-subprocess.call('cp -pRL '+qt4_plugins_location+' '+directory_name+'/bin/',shell=True,cwd='../../')
-print 'Copying supplementary material into package directory structure'
-subprocess.call('cp -pRL stage/share/openstructure '+directory_name+'/share/',shell=True,cwd='../../')
-print 'Copying examples into package directory structure'
-subprocess.call('cp -pRL examples '+directory_name+'/share/openstructure/',shell=True,cwd='../../')
-print 'Copying ReadMe file into package directory structure'
-subprocess.call('cp deployment/README.html '+directory_name,shell=True,cwd='../../')
-print 'Creating executables at the top level of the package directory structure'
-subprocess.call('ln -sf bin/dng ./dng',shell=True,cwd='../../'+directory_name)
-subprocess.call('ln -sf bin/ost ./ost',shell=True,cwd='../../'+directory_name)
-subprocess.call('ln -sf bin/lddt ./lddt',shell=True,cwd='../../'+directory_name)
-print 'Copying additional libraries in the package directory structure'
-subprocess.call('cp '+ssl_crypto_location+'/libssl.so* '+directory_name+'/'+libdir,shell=True,cwd='../../')
-subprocess.call('cp '+ssl_crypto_location+'/libcrypto.so* '+directory_name+'/'+libdir,shell=True,cwd='../../')
-subprocess.call('cp -pRL /usr/lib/libboost_program_options.so* '+directory_name+'/'+libdir+'/',shell=True,cwd='../../')
-print 'Copying python headers in the package directory structure'
-subprocess.call('mkdir -p '+directory_name+'/local/include/',shell=True,cwd='../../')
-subprocess.call('cp -r /usr/include/'+system_python_executable+' '+directory_name+'/local/include/',shell=True,cwd='../../')
-print 'Stripping pyc files from bundle'
-subprocess.call('rm -rf $(find . -name *.pyc)',shell=True,cwd='../../')
-print 'removing dokk and harmony examples from bundle'
-subprocess.call('rm -rf '+directory_name+'/share/openstructure/examples/code_fragments/dokk',shell=True,cwd='../../')
-subprocess.call('rm -rf '+directory_name+'/share/openstructure/examples/code_fragments/harmony',shell=True,cwd='../../')
-print 'Compressing the bundle'
-subprocess.call('tar cfz '+directory_name+'.tgz '+directory_name,shell=True,cwd='../../')
-print "Done. Please run 'git reset --hard HEAD' in the top directory before restarting."
-
diff --git a/deployment/linux/ldd-rec.pl b/deployment/linux/ldd-rec.pl
deleted file mode 100644
index 52e8455cf..000000000
--- a/deployment/linux/ldd-rec.pl
+++ /dev/null
@@ -1,52 +0,0 @@
-#!/usr/bin/perl -w
-
-# recursive ldd: calls ldd, parses its output, recalls ldd on each
-# output library until all dependencies are resolved.
-
-# Copyright (c) 2007 Andreas Bernauer, andreas@lysium.de
-
-my @check_queue = (); # libs to check
-my %checked_libs = (); # libs already checked.
-my %result = (); # result
-my $lib; # current dependency library
-
-$ENV{"LC_CTYPE"}="C"; # we match against English output of ldd
-
-push @check_queue, @ARGV;
-
-while (@check_queue) {
- my $to_check = pop @check_queue;
- if (exists $checked_libs{$to_check} or $to_check =~ /ld-linux.so.2/) {
- next;
- } else {
- $checked_libs{$to_check} = 1;
- }
-
- my @libraries = `ldd $to_check`;
- foreach my $line (@libraries) {
- chomp $line;
- if ($line =~ / => (\S+) \(/ # mapped libraries
- or $line =~ /(\S+) \(/) { # directly resolved libraries
- $lib = $1;
- $result{$lib} = 1;
- push @check_queue, $lib;
- } elsif ($line eq "\tstatically linked" # no library
- or $line eq"\tnot a dynamic executable"
-# or $line =~ /^.*:$/
- or $line =~ /linux-gate.so.1/) { # http://www.trilithium.com/johan/2005/08/linux-gate/
- next;
- } elsif ($line =~ /not found/) {
- print STDERR "$to_check: $line\n";
- } else {
- print STDERR "no match for '$line'\n";
- }
- }
-}
-
-#print "Dependencies:\n";
-for (sort keys %result) {
- print $_, "\n";
-}
-
-exit 0;
-
--
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