diff --git a/modules/mol/alg/pymod/lddt.py b/modules/mol/alg/pymod/lddt.py index cc9d960867ad4bcaf6335fd6d9a8ad9b6c1b857c..ac2458a51e460542a9158bd58b98c71b0677fe40 100644 --- a/modules/mol/alg/pymod/lddt.py +++ b/modules/mol/alg/pymod/lddt.py @@ -431,7 +431,7 @@ class lDDTScorer: no_intrachain=False, penalize_extra_chains=False, residue_mapping=None, return_dist_test=False, check_resnames=True, add_mdl_contacts=False, - process_model_out=None, interaction_data=None): + interaction_data=None): """Computes lDDT of *model* - globally and per-residue :param model: Model to be scored - models are preferably scored upon @@ -521,8 +521,6 @@ class lDDTScorer: be added if the respective atom pair is not resolved in the target. :type add_mdl_contacts: :class:`bool` - :param process_model_out: Pro param - don't use - :type process_model_out: :class:`tuple` :param interaction_data: Pro param - don't use :type interaction_data: :class:`tuple` @@ -555,16 +553,12 @@ class lDDTScorer: # data objects defining model data - see _ProcessModel for rough # description - if process_model_out is None: - pos, res_ref_atom_indices, res_atom_indices, res_atom_hashes, \ - res_indices, ref_res_indices, symmetries = \ - self._ProcessModel(model, chain_mapping, - residue_mapping = residue_mapping, - thresholds = thresholds, - check_resnames = check_resnames) - else: - pos, res_ref_atom_indices, res_atom_indices, res_atom_hashes, \ - res_indices, symmetries = process_model_out + pos, res_ref_atom_indices, res_atom_indices, res_atom_hashes, \ + res_indices, ref_res_indices, symmetries = \ + self._ProcessModel(model, chain_mapping, + residue_mapping = residue_mapping, + thresholds = thresholds, + check_resnames = check_resnames) if no_interchain and no_intrachain: raise RuntimeError("no_interchain and no_intrachain flags are "