From 11d979fc9351cd498f24ee43d5b8d3f2f611f053 Mon Sep 17 00:00:00 2001 From: Andrew Waterhouse <andrew.waterhouse@unibas.ch> Date: Mon, 30 Dec 2019 10:37:23 +0100 Subject: [PATCH] decode subprocess sout --- modules/bindings/pymod/hhblits.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/bindings/pymod/hhblits.py b/modules/bindings/pymod/hhblits.py index 23d267518..85dc65255 100644 --- a/modules/bindings/pymod/hhblits.py +++ b/modules/bindings/pymod/hhblits.py @@ -667,7 +667,7 @@ class HHblits: job = subprocess.Popen(cs_cmd, shell=True, cwd=self.working_dir, stdout=subprocess.PIPE, stderr=subprocess.PIPE) sout, _ = job.communicate() - lines = sout.decode() + sout = sout.decode() if 'Wrote abstract state sequence to' in sout: return cs_file -- GitLab