From 1425d6b021bb7661e948d9514081e55d1be10d41 Mon Sep 17 00:00:00 2001
From: stefan <stefan@5a81b35b-ba03-0410-adc8-b2c5c5119f08>
Date: Fri, 16 Jul 2010 12:31:37 +0000
Subject: [PATCH] sequence alignment dialog, show entity names
git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2575 5a81b35b-ba03-0410-adc8-b2c5c5119f08
---
modules/gui/pymod/init_context_menu.py | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/modules/gui/pymod/init_context_menu.py b/modules/gui/pymod/init_context_menu.py
index 548c7ed23..ffe853bae 100644
--- a/modules/gui/pymod/init_context_menu.py
+++ b/modules/gui/pymod/init_context_menu.py
@@ -160,7 +160,7 @@ class AlignmentContextMenu(QtCore.QObject):
if show_scores:
self.__ShowScore(ent_list, res_list)
if display_alignment:
- self.__DisplayAlignment(res_list)
+ self.__DisplayAlignment(ent_list, res_list)
def __ShowScore(self, ent_list, res_list):
if(len(res_list)==1):
@@ -170,13 +170,14 @@ class AlignmentContextMenu(QtCore.QObject):
elif(len(res_list)>1):
ShowResultDialog(ent_list, res_list).exec_()
- def __DisplayAlignment(self, res_list):
+ def __DisplayAlignment(self, ent_list, res_list):
if(len(res_list)>0):
- ref_seq = seq.CreateSequence("REF",res_list[0].ref_sequence.GetGaplessString())
+ ref_seq = seq.CreateSequence("%s (ref)"%ent_list[0].GetName(),res_list[0].ref_sequence.GetGaplessString())
aln_list = seq.AlignmentList()
if(ref_seq.IsValid()):
- for res in res_list:
- aln_list.append(res.alignment)
+ for i in range(0, len(res_list)):
+ res_list[i].alignment.SetSequenceName(1,ent_list[i+1].GetName())
+ aln_list.append(res_list[i].alignment)
alignment = alg.MergePairwiseAlignments(aln_list, ref_seq)
gosty = gui.GostyApp.Instance()
main_area = gosty.perspective.GetMainArea()
--
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