From 1697ee4d545fdc65485cd4521553feb415705784 Mon Sep 17 00:00:00 2001
From: Pascal Benkert <pascal.benkert@unibas.ch>
Date: Wed, 13 Jul 2011 11:48:58 +0200
Subject: [PATCH] rename extract_burial_status_flag to extract_burial_status
---
modules/bindings/pymod/dssp.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/modules/bindings/pymod/dssp.py b/modules/bindings/pymod/dssp.py
index 05236eadc..46976cd26 100644
--- a/modules/bindings/pymod/dssp.py
+++ b/modules/bindings/pymod/dssp.py
@@ -105,7 +105,7 @@ def AssignDSSP(ent, pdb_path="", extract_burial_status=False, tmp_dir=None,
raise RuntimeEror('DSSP output file does not exist.')
# assign DSSP to entity
try:
- LoadDSSP(temp_dssp_path, ent, extract_burial_status_flag,
+ LoadDSSP(temp_dssp_path, ent, extract_burial_status,
entity_saved_flag)
except Exception, e:
# clean up
@@ -125,7 +125,7 @@ def AssignDSSP(ent, pdb_path="", extract_burial_status=False, tmp_dir=None,
-def LoadDSSP(file_name, model, extract_burial_status_flag=0,
+def LoadDSSP(file_name, model, extract_burial_status=0,
entity_saved_flag=0, calculate_relative_sa=True):
if model.IsValid() == 0:
print "DSSP: model is not valid"
@@ -161,7 +161,7 @@ def LoadDSSP(file_name, model, extract_burial_status_flag=0,
residue=chain.FindResidue(mol.ResNum(int(num),ins_code))
# set property "burial status:
- if extract_burial_status_flag == 1:
+ if extract_burial_status == 1:
#set default (dummy) burial status for incomplete residues:
residue.SetStringProp("burial_status", 'X')
--
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