From 172c0fa1b9583d191bfa38a4a21aa94e3cd95a14 Mon Sep 17 00:00:00 2001
From: Stefan Bienert <stefan.bienert@unibas.ch>
Date: Thu, 20 Feb 2020 14:09:52 +0100
Subject: [PATCH] SCHWED-4635: Add new compiler flags to container compilation

---
 docker/Dockerfile | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/docker/Dockerfile b/docker/Dockerfile
index 56d87ebcf..5dfd05ed7 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -84,7 +84,9 @@ RUN cd ${SRC_FOLDER} && \
              -DOPEN_MM_INCLUDE_DIR=$OPENMM_INCLUDE_PATH \
              -DOPEN_MM_PLUGIN_DIR=$OPENMM_LIB_PATH/plugins \
              -DENABLE_GFX=ON \
-             -DENABLE_GUI=ON && \
+             -DENABLE_GUI=ON \
+             -DCMAKE_C_FLAGS="-isystem /usr/include/boost/ -isystem ${OPENMM_INCLUDE_PATH}/include" \
+             -DCMAKE_CXX_FLAGS="-isystem /usr/include/boost/ -isystem ${OPENMM_INCLUDE_PATH}/include" && \
     make -j ${CPUS_FOR_MAKE} && \
     wget ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz && \
     stage/bin/chemdict_tool create components.cif.gz compounds.chemlib pdb && stage/bin/chemdict_tool update ../modules/conop/data/charmm.cif compounds.chemlib charmm && \
-- 
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