From 1c314e69db0864360eafa11a06da6725c8cfe6de Mon Sep 17 00:00:00 2001
From: Gabriel Studer <gabriel.studer@unibas.ch>
Date: Fri, 19 Nov 2021 10:55:13 +0100
Subject: [PATCH] prefer blastp over blastall when looking for blast executable
blastall is legacy
---
modules/bindings/pymod/blast.py | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/modules/bindings/pymod/blast.py b/modules/bindings/pymod/blast.py
index 2cff9231c..e64e01530 100644
--- a/modules/bindings/pymod/blast.py
+++ b/modules/bindings/pymod/blast.py
@@ -177,10 +177,10 @@ def BlastVersion(blast_location=None):
"""
try:
- blast_exe=settings.Locate('blastall',explicit_file_name=blast_location)
+ blast_exe=settings.Locate('blastp',explicit_file_name=blast_location)
except:
try:
- blast_exe=settings.Locate('blastp', explicit_file_name=blast_location)
+ blast_exe=settings.Locate('blastall', explicit_file_name=blast_location)
except:
raise RuntimeError('could not find blast executable')
@@ -242,10 +242,10 @@ def Blast(query, database, gap_open=11, gap_ext=1, matrix='BLOSUM62',
if blast_location==None:
try:
- blast_exe=settings.Locate('blastall')
+ blast_exe=settings.Locate('blastp')
except:
try:
- blast_exe=settings.Locate('blastp')
+ blast_exe=settings.Locate('blastall')
except:
raise RuntimeError('could not find blast executable')
else:
--
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