diff --git a/docker/README.rst b/docker/README.rst index e02d9787bc1c43203859642f96c3cfeb6fb4d92f..4ecbfe5b669cf53b53704f75500538c463bef2b8 100644 --- a/docker/README.rst +++ b/docker/README.rst @@ -105,21 +105,10 @@ Here is an example run of the compare-structures action: docker run --rm -v $(pwd):/home <IMAGE NAME> compare-structures \ --model model.pdb \ - --reference reference.pdb \ - --output output.json \ - --qs-score \ - --residue-number-alignment \ + --reference reference.cif \ + --output scores.json \ --lddt \ - --structural-checks \ - --consistency-checks \ - --inclusion-radius 15.0 \ - --bond-tolerance 15.0 \ - --angle-tolerance 15.0 \ - --molck \ - --remove oxt hyd unk \ - --clean-element-column \ - --map-nonstandard-residues - + --local-lddt In order to see all available options for this action run: