From 25c6e87af508cba361119f9d9550595f39c32ae5 Mon Sep 17 00:00:00 2001
From: Valerio Mariani <valerio.mariani@unibas.ch>
Date: Thu, 15 Nov 2012 17:10:04 +0100
Subject: [PATCH] Additional information in the lddt output

---
 modules/mol/alg/src/lddt.cc | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/modules/mol/alg/src/lddt.cc b/modules/mol/alg/src/lddt.cc
index 4d76ebd47..22902b1d1 100644
--- a/modules/mol/alg/src/lddt.cc
+++ b/modules/mol/alg/src/lddt.cc
@@ -398,7 +398,14 @@ int main (int argc, char **argv)
               << " checked, over " << cutoffs.size() << " thresholds)" << std::endl;
 
     // prints the residue-by-residue statistics  
-    std::cout << "Local LDDT Score:" << std::endl;
+    if (structural_checks) {
+      std::cout << "Local LDDT Scores:" << std::endl;
+      std::cout << "(A 'Yes' in the 'Quality Problems' column stands for problems" << std::endl;
+      std::cout << "in the side-chain of a residue, while a 'Yes+' for problems" << std::endl;
+      std::cout << "in the backbone)" << std::endl;
+    } else {
+      std::cout << "Local LDDT Scores:" << std::endl;
+    }
     if (structural_checks) {
       std::cout << "Chain\tResName\tResNum\tAsses.\tQ.Prob.\tScore\t(Conserved/Total, over " << cutoffs.size() << " thresholds)" << std::endl;
     } else {
-- 
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