From 3577b93722b768a216f2b612aa91e7468f9aaf38 Mon Sep 17 00:00:00 2001
From: Gabriel Studer <gabriel.studer@stud.unibas.ch>
Date: Tue, 20 Nov 2012 13:57:06 +0100
Subject: [PATCH] slightly simplified check, wether blast executable is
available.
---
modules/bindings/tests/test_blast.py | 9 +++------
1 file changed, 3 insertions(+), 6 deletions(-)
diff --git a/modules/bindings/tests/test_blast.py b/modules/bindings/tests/test_blast.py
index 85a65ea24..48cb56068 100644
--- a/modules/bindings/tests/test_blast.py
+++ b/modules/bindings/tests/test_blast.py
@@ -97,12 +97,9 @@ class TestBlastBindings(unittest.TestCase):
if __name__ == "__main__":
# test if blast package is available on system, otherwise ignore tests
try:
- blastpath=settings.Locate('blastp')
+ blastpath=settings.Locate(('blastp','blastall'))
except(settings.FileNotFound):
- try:
- blastpath=settings.Locate('blastall')
- except:
- print "Could not find blast executable: ignoring unit tests"
- sys.exit(0)
+ print "Could not find blast executable: ignoring unit tests"
+ sys.exit(0)
from ost import testutils
testutils.RunTests()
--
GitLab