diff --git a/modules/doc/actions.rst b/modules/doc/actions.rst index 9609642ff6c333bdefe2ae1f27746d2c574f1334..ccda8476eee514ece15815bab7bff2fe0b27de02 100644 --- a/modules/doc/actions.rst +++ b/modules/doc/actions.rst @@ -38,6 +38,12 @@ In summary it performs the following steps: :class:`single chain lDDT scores <ost.mol.alg.lDDTScorer>`, :attr:`weighted average of single chain lDDT scores <ost.mol.alg.qsscoring.OligoLDDTScorer.weighted_lddt>`, :attr:`lDDT score of oligomer <ost.mol.alg.qsscoring.OligoLDDTScorer.oligo_lddt>`). + Note that while the QS score is symmetric (same result when swapping reference + and model), the lDDT scores are not. Extra atoms in the model for mapped + chains have no effect on the score, while extra atoms in the reference reduce + the score. For the oligomeric variants (weighted-lDDT & oligo-lDDT), we do + :attr:`penalize for extra chains <ost.mol.alg.qsscoring.OligoLDDTScorer.penalize_extra_chains>` + in both reference and model. .. note ::