diff --git a/modules/mol/base/doc/entity.rst b/modules/mol/base/doc/entity.rst index a41729c3efc5197a56068d85779148c478cc7875..b854b2b2476224322af5ee886ea43da74ed5fe01 100644 --- a/modules/mol/base/doc/entity.rst +++ b/modules/mol/base/doc/entity.rst @@ -1660,6 +1660,26 @@ Entity View is not part of the view :rtype: (Chain\|Residue\|Atom)View + .. method:: ExtendViewToResidues() + + Extend current view to include all atoms of each residue where + at least one atom is selected currently. + + :returns: The extended view + :rtype: :class:`EntityView` + + .. method:: ExtendViewToSurrounding(handle) + + Extend current view to include all atoms that are within the sum + of their van-der-Waals radius + gap. + + This includes all atoms within: at1.GetRadius() + at2.GetRadius() + gap. + + :param gap: the gap between atoms + :type gap: float + :returns: The extended view + :rtype: :class:`EntityView` + .. method:: Select(query, flags=0) Perform selection on entity view. See :meth:`EntityHandle.Select`. @@ -1680,6 +1700,12 @@ Entity View :rtype: :class:`EntityView` + .. method:: Dump() + + Returns a string containing a human-readable summary of the entity view. + + :rtype: :class:`str` + .. method:: GetMass() Get total mass of view. @@ -2272,6 +2298,7 @@ Boolean Operators Other Entity-Related Functions ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ +.. function:: CreateViewFromAtoms(atom_list) .. function:: CreateViewFromAtomList(atom_list) Returns a view made up of the atoms in *atom_list*. All atoms are required to