From 4cb6f2b3d5c1a9c9def519c70e30179bd9612d20 Mon Sep 17 00:00:00 2001
From: pascal <pascal@5a81b35b-ba03-0410-adc8-b2c5c5119f08>
Date: Mon, 26 Apr 2010 15:40:25 +0000
Subject: [PATCH] restore to new property-nomenclature
git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2117 5a81b35b-ba03-0410-adc8-b2c5c5119f08
---
modules/bindings/pymod/dssp.py | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/modules/bindings/pymod/dssp.py b/modules/bindings/pymod/dssp.py
index 935352927..234ba7406 100644
--- a/modules/bindings/pymod/dssp.py
+++ b/modules/bindings/pymod/dssp.py
@@ -137,22 +137,22 @@ def LoadDSSP(file_name, model, extract_burial_status_flag=0,
# set property "burial status:
if extract_burial_status_flag == 1:
#set default (dummy) burial status for incomplete residues:
- residue.SetGenericStringProperty("burial_status", 'X')
+ residue.SetStringProp("burial_status", 'X')
#handle seleno-methionine appearing as amino acid 'X' in DSSP:
if residue.name=="MSE" and amino_acid=='X':
amino_acid='M'
- residue.SetGenericFloatProperty("solvent_accessibility",
+ residue.SetFloatProp("solvent_accessibility",
solvent_accessibility)
if calculate_relative_sa:
relative_sa=_CalcRelativeSA(amino_acid,solvent_accessibility)
- residue.SetGenericFloatProperty("relative_solvent_accessibility",
+ residue.SetFloatProp("relative_solvent_accessibility",
relative_sa)
if relative_sa < 0.25:
- residue.SetGenericStringProperty("burial_status", 'b')
+ residue.SetStringProp("burial_status", 'b')
else:
- residue.SetGenericStringProperty("burial_status", 'e')
+ residue.SetStringProp("burial_status", 'e')
except Exception, e:
print "ERROR:",e
continue
--
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