diff --git a/examples/scoring/README.md b/examples/scoring/README.md index 533ce96d311f0ec2453a2657e9be35b3bfa18569..2345c4bbc01b0a9dc2efc3fad54a86a65311cc67 100644 --- a/examples/scoring/README.md +++ b/examples/scoring/README.md @@ -34,7 +34,7 @@ default output (out.json): ost compare-structures -m model.pdb -r reference.cif.gz --lddt --local-lddt --qs-score ``` -Example output: [compare-structures_example_out.json] +An example output can be found [here](compare-structures_example_out.json) By default, model-reference chains are aligned using Needleman-Wunsch. Many benchmarking efforts such as CASP and CAMEO assume residue numbers @@ -53,7 +53,7 @@ We can compute LDDT-PLI and BiSyRMSD with: ost compare-ligand-structures -m model.pdb -r reference.cif.gz -ml *.sdf --rmsd --lddt-pli ``` -Example output: [compare-ligand-structures_example_out.json] +An example output can be found [here](compare-ligand-structures_example_out.json) Again, it is advised to use the `-rna` flag if applicable. In this example, reference ligands are directly extracted from the provided mmCIF file based on