From 4d675ea9f3bb6852336cb7140dd2b8aa298f93b7 Mon Sep 17 00:00:00 2001
From: valerio <valerio@5a81b35b-ba03-0410-adc8-b2c5c5119f08>
Date: Tue, 15 Jun 2010 08:53:36 +0000
Subject: [PATCH] Update create_bundle.py script to handle chemlib
git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@2400 5a81b35b-ba03-0410-adc8-b2c5c5119f08
---
deployment/linux/create_bundle.py | 9 ++++++++-
1 file changed, 8 insertions(+), 1 deletion(-)
diff --git a/deployment/linux/create_bundle.py b/deployment/linux/create_bundle.py
index 8869c25a3..3ee9a6c54 100644
--- a/deployment/linux/create_bundle.py
+++ b/deployment/linux/create_bundle.py
@@ -52,11 +52,18 @@ subprocess.call('sed "s/\#export QT_PLUGIN_PATH/ export QT_PLUGIN_PATH/g" script
subprocess.call('mv scripts/dng.in scripts/dng.in.backup',shell=True,cwd='../../')
subprocess.call('sed "s/\#export LD_LIBRARY_PATH/ export LD_LIBRARY_PATH/g" scripts/dng.in.backup > scripts/dng.in.preprepre',shell=True,cwd='../../')
subprocess.call('sed "s/\#export PYTHONHOME/ export PYTHONHOME/g" scripts/dng.in.preprepre > scripts/dng.in.prepre',shell=True,cwd='../../')
-subprocess.call('sed "s/\#export PYTHONPATH/ export PYTHONPATH/g" scripts/ost.in.prepre > scripts/ost.in.pre',shell=True,cwd='../../')
+subprocess.call('sed "s/\#export PYTHONPATH/ export PYTHONPATH/g" scripts/dng.in.prepre > scripts/dng.in.pre',shell=True,cwd='../../')
subprocess.call('sed "s/\#export QT_PLUGIN_PATH/ export QT_PLUGIN_PATH/g" scripts/dng.in.pre > scripts/dng.in',shell=True,cwd='../../')
+print 'Downloading Chemlib dictionary'
+subprocess.call('wget ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif', shell=True, cwd='../../')
print 'Compiling Openstructure'
subprocess.call('cmake ./ -DCMAKE_BUILD_TYPE=Release -DPREFIX='+directory_name+' -DBoost_COMPILER='+boost_string, shell=True,cwd='../../')
subprocess.call('make',shell=True,cwd='../../')
+print 'Converting Chemlib dictionary'
+subprocess.call('stage/bin/chemdict_tool create components.cif compounds.chemlib', shell=True, cwd='../../')
+print 'Staging Chemlib dictionary'
+subprocess.call('cmake ./ -DCOMPOUND_LIB=compounds.chemlib',shell=True,cwd='../../')
+subprocess.call('make',shell=True,cwd='../../')
print 'Removing obsolete packages and package directory'
subprocess.call('rm -fr openstructure-linux*',shell=True,cwd='../../')
print 'Creating new package directory'
--
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