diff --git a/actions/ost-compare-structures b/actions/ost-compare-structures index ff579be64c219ea4029389fb6be4c23eda099d13..86ab664e96a2d98a31ac4f4679cd486bec3f3288 100644 --- a/actions/ost-compare-structures +++ b/actions/ost-compare-structures @@ -307,8 +307,8 @@ def _ParseArgs(): " * oxt - remove terminal oxygens\n" " * nonstd - remove all residues not one of the 20\n" " * standard amino acids\n" - " * unk - Remove unknown and atoms not following the" - "nomenclature")) + " * unk - Remove unknown and atoms not following the\n" + " nomenclature")) parser.add_argument( "-ce", "--clean-element-column", diff --git a/modules/doc/actions.rst b/modules/doc/actions.rst index 4ff4afc6aabf48fc88e8fb75ec9a717e51a19f5a..8c31b7d4108e670f8c6091059438f82e4a8bb5e9 100644 --- a/modules/doc/actions.rst +++ b/modules/doc/actions.rst @@ -23,8 +23,8 @@ lDDT scores between two complexes from the command line with: [-o OUTPUT] [-d] [-ds DUMP_SUFFIX] [-rs REFERENCE_SELECTION] [-ms MODEL_SELECTION] [-ca] [-ft] [-cl COMPOUND_LIBRARY] [-qs] - [-c CHAIN_MAPPING [CHAIN_MAPPING ...]] [-rna] - [-l] [-ir INCLUSION_RADIUS] + [-c CHAIN_MAPPING [CHAIN_MAPPING ...]] + [--qs-rmsd] [-rna] [-l] [-ir INCLUSION_RADIUS] [-ss SEQUENCE_SEPARATION] [-spr] [-ml] [-rm REMOVE [REMOVE ...]] [-ce] [-mn] [-sc] [-p PARAMETER_FILE] [-bt BOND_TOLERANCE]