From 56a5f1166d2cc97ae3f867f5e55f19781cae16d4 Mon Sep 17 00:00:00 2001
From: Gerardo Tauriello <gerardo.tauriello@unibas.ch>
Date: Wed, 26 Jul 2017 16:56:26 +0200
Subject: [PATCH] SCHWED-2440: one more test for local align fails.
---
modules/mol/alg/tests/test_convenient_superpose.py | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/modules/mol/alg/tests/test_convenient_superpose.py b/modules/mol/alg/tests/test_convenient_superpose.py
index 408e00f97..30f062429 100644
--- a/modules/mol/alg/tests/test_convenient_superpose.py
+++ b/modules/mol/alg/tests/test_convenient_superpose.py
@@ -223,6 +223,12 @@ class TestConvenientSuperpose(unittest.TestCase):
view1, view2 = mol.alg.MatchResidueByGlobalAln(ent_1_full, ent_2_full)
self.assertEqual(view1.atom_count, exp_atom_count)
self.assertEqual(view2.atom_count, exp_atom_count)
+ # try case where local alignment fails
+ ev1 = ent_1.Select('rindex<2') # seq = GI
+ ev2 = ent_2.Select('rindex=2:3') # seq = RA
+ view1, view2 = mol.alg.MatchResidueByLocalAln(ev1, ev2)
+ self.assertEqual(view1.atom_count, 0)
+ self.assertEqual(view2.atom_count, 0)
if __name__ == "__main__":
from ost import testutils
--
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