From 571aef86a7fc1f1abf426175be265569e683c3f5 Mon Sep 17 00:00:00 2001
From: Xavier Robin <xavalias-github@xavier.robin.name>
Date: Thu, 6 Jun 2024 11:53:09 +0200
Subject: [PATCH] SCHWED-6331 string value can be replaced with ? when missing
---
modules/io/src/mol/mmcif_reader.cc | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/modules/io/src/mol/mmcif_reader.cc b/modules/io/src/mol/mmcif_reader.cc
index 932d065ab..5561fdd8d 100644
--- a/modules/io/src/mol/mmcif_reader.cc
+++ b/modules/io/src/mol/mmcif_reader.cc
@@ -1698,9 +1698,8 @@ void MMCifReader::ParseStructRefSeqDif(const std::vector<StringRef>& columns)
if (indices_[SRSD_DB_RNUM] != -1) {
db_rnum=columns[indices_[SRSD_DB_RNUM]].str();
} else {
- LOG_INFO("Ignoring struct_ref_seq_dif with missing data item "
- "pdbx_seq_db_seq_num");
- return;
+ db_rnum="?";
+ LOG_INFO("Setting missing struct_ref_seq_dif.pdbx_seq_db_seq_num to '?");
}
std::pair<bool,int> seq_rnum;
--
GitLab