From 596c72d2d7051a59f6d1ed148df9911f6667b82b Mon Sep 17 00:00:00 2001
From: Marco Biasini <marco.biasini@unibas.ch>
Date: Wed, 28 Nov 2012 12:59:13 +0100
Subject: [PATCH] preserve attached entity views
---
modules/seq/alg/src/impl/align_impl.hh | 9 +++++++++
1 file changed, 9 insertions(+)
diff --git a/modules/seq/alg/src/impl/align_impl.hh b/modules/seq/alg/src/impl/align_impl.hh
index 2df545dbd..33c1afe76 100644
--- a/modules/seq/alg/src/impl/align_impl.hh
+++ b/modules/seq/alg/src/impl/align_impl.hh
@@ -98,6 +98,15 @@ inline void DLLEXPORT StoreStrAsAln(String& aln_str1, String& aln_str2,
AlignmentHandle aln=CreateAlignment();
aln.AddSequence(CreateSequence(s1.GetName(), aln_str1));
aln.AddSequence(CreateSequence(s2.GetName(), aln_str2));
+
+ if (s1.GetAttachedView()) {
+ aln.AttachView(0, s1.GetAttachedView());
+ }
+
+ if (s2.GetAttachedView()) {
+ aln.AttachView(1, s2.GetAttachedView());
+ }
+
aln.SetSequenceOffset(0, i);
aln.SetSequenceOffset(1, j);
alignments.push_back(aln);
--
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