From 5c64bae53e814fcc1a94af73ddf3790c08d6a3c0 Mon Sep 17 00:00:00 2001
From: Gabriel Studer <gabriel.studer@unibas.ch>
Date: Thu, 19 Dec 2024 11:30:12 +0100
Subject: [PATCH] compare-ligand-structures action: remove dead code
---
actions/ost-compare-ligand-structures | 34 ---------------------------
1 file changed, 34 deletions(-)
diff --git a/actions/ost-compare-ligand-structures b/actions/ost-compare-ligand-structures
index 2c38bb67d..3235e31d0 100644
--- a/actions/ost-compare-ligand-structures
+++ b/actions/ost-compare-ligand-structures
@@ -424,40 +424,6 @@ def _GetStructureFormat(structure_path, sformat=None):
f"file {structure_path}.")
-def _LoadStructure(structure_path, sformat, fault_tolerant, bu_id):
- """Read OST entity either from mmCIF or PDB.
-
- The returned structure has structure_path attached as structure name
- """
-
- # Load the structure
- if sformat == "mmcif":
- if bu_id is not None:
- cif_entity, cif_seqres, cif_info = \
- io.LoadMMCIF(structure_path, info=True, seqres=True,
- fault_tolerant=fault_tolerant)
- for biounit in cif_info.biounits:
- if biounit.id == bu_id:
- entity = ost.mol.alg.CreateBU(cif_entity, biounit)
- break
- else:
- raise RuntimeError(f"No biounit found with ID '{bu_id}'.")
-
- else:
- entity = io.LoadMMCIF(structure_path,
- fault_tolerant = fault_tolerant)
- if len(entity.residues) == 0:
- raise Exception(f"No residues found in file: {structure_path}")
- else:
- entity = io.LoadPDB(structure_path, fault_tolerant = fault_tolerant)
- if len(entity.residues) == 0:
- raise Exception(f"No residues found in file: {structure_path}")
-
- # restore old loglevel and return
- entity.SetName(structure_path)
- return entity
-
-
def _LoadLigands(ligands):
"""
Load a list of ligands from file names. Return a list of entities oif the
--
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