From 5d16d160b0b882ccf7fc4f9c25c419cccc0c71a7 Mon Sep 17 00:00:00 2001
From: Xavier Robin <xavier.robin@unibas.ch>
Date: Wed, 14 Feb 2024 14:55:55 +0100
Subject: [PATCH] CI: try to link the compound lib differently
---
.gitlab-ci.yml | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 3e8e311aa..908d0fa56 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -10,6 +10,8 @@ stages:
test:centos7.3:
stage: test
image: centos:7.3.1611
+ variables:
+ COMP_LIB: "/scicore/home/schwede/GROUP/OpenStructure/ChemLib/2.6/compounds.chemlib"
before_script:
- echo "Running centos7.3 'before_script'..."
- yum -y -q -e 0 install tcl
@@ -74,11 +76,9 @@ test:centos7.3:
-DCMAKE_C_FLAGS='-L${EBROOTLIBPNG}/lib/ -L${EBROOTLIBTIFF}/lib/ -L${EBROOTZLIB}/lib/ -isystem ${EBROOTBOOST}/include -isystem ${EBROOTOPENMM}/include'
-DCMAKE_CXX_FLAGS='-L${EBROOTLIBPNG}/lib/ -L${EBROOTLIBTIFF}/lib/ -L${EBROOTZLIB}/lib/ -isystem ${EBROOTBOOST}/include -isystem ${EBROOTOPENMM}/include'
-DCMAKE_EXE_LINKER_FLAGS=" -pthread"
+ -DCOMPOUND_LIB="$COMP_LIB"
- make -j 2
- echo " ... done building OST."
- - echo " Linking the compound library..."
- - ln -s /scicore/home/schwede/GROUP/OpenStructure/ChemLib/2.6/compounds.chemlib stage/share/openstructure/
- - echo " ... done linking the compound library..."
- echo " Running unit tests for OST..."
- make check
- echo " ... done running unit tests for OST..."
--
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