diff --git a/modules/doc/install.rst b/modules/doc/install.rst index 671595eba4a5f1223134a3d7f2bdea6448f4b406..abd0b2b88fc0b8a8847d45fecad463bda6219b5c 100644 --- a/modules/doc/install.rst +++ b/modules/doc/install.rst @@ -6,7 +6,7 @@ Installing OpenStructure From Source This document describes how to install OpenStructure from source. If you are mainly insterested in using OpenStructure and are not planning to modify the code of OpenStructure itself, please use one of the binaries `available for - download <http://openstructure.org/download/>`_. + download <http://www.openstructure.org/download/>`_. Brief Overview -------------------------------------------------------------------------------- diff --git a/modules/doc/intro-03.rst b/modules/doc/intro-03.rst index c2d6713d7351ea744bb6913baf0e507f3e6430ea..be0d793b049081f220e5dbff14d22e085fe53576 100644 --- a/modules/doc/intro-03.rst +++ b/modules/doc/intro-03.rst @@ -37,7 +37,7 @@ In fact, this is the preferred way to use functionality of the scene. As an easy .. code-block:: python - scene.background=gfx.WHITE + scene.SetBackground(gfx.WHITE) Now, the color of the screen has changed to white. To set it back to black, simply assign :obj:`gfx.BLACK` to the background property. @@ -54,7 +54,7 @@ manipulated: obj.SetColor(gfx.RED) -The last command assigns a uniform red coloring to all atoms. +The last command assigns a uniform red color to all atoms. The Graphical Entity diff --git a/modules/seq/base/doc/seq.rst b/modules/seq/base/doc/seq.rst index 7deafe22e797a6d0c4f1ab22cc041f56e5889cbc..9d6e8d213f743a6383d4cdaf2a2eaee2a7f132c5 100644 --- a/modules/seq/base/doc/seq.rst +++ b/modules/seq/base/doc/seq.rst @@ -107,6 +107,14 @@ The SequenceHandle # a gap" print s.GetResidueIndex(3) + .. method:: GetResidue(pos) + + As, :meth:`GetResidueIndex`, but directly returns the residue view. If no + view is attached, or if the position is a gap, an invalid residue view + is returned. + + :rtype: :class:`~ost.mol.ResidueView` + .. method:: GetLastNonGap() Get position of last non-gap character in sequence. In case of an empty