From 6218e8d3b667f2ce279ce90ea1c60a5adb1e5623 Mon Sep 17 00:00:00 2001
From: Stefan Bienert <stefan.bienert@unibas.ch>
Date: Wed, 12 Feb 2020 15:02:16 +0100
Subject: [PATCH] SCHWED-4612: Remove a message from HHblits bindings test.
---
modules/bindings/tests/test_hhblits.py | 18 ++++++++++++++++++
1 file changed, 18 insertions(+)
diff --git a/modules/bindings/tests/test_hhblits.py b/modules/bindings/tests/test_hhblits.py
index 1bc6b3652..7e0e3a7fc 100644
--- a/modules/bindings/tests/test_hhblits.py
+++ b/modules/bindings/tests/test_hhblits.py
@@ -13,6 +13,24 @@ import ost
from ost import seq
from ost.bindings import hhblits
+class _UnitTestHHblitsLog(ost.LogSink):
+ """Dedicated logger to hide some expected warning/ error messages.
+ """
+ def __init__(self):
+ ost.LogSink.__init__(self)
+ self.lcwd = os.getcwd()
+
+ def LogMessage(self, message, severity):
+ message = message.strip()
+ dnem = "could not open file '%s'" % os.path.join(self.lcwd,
+ 'doesnotexist.a3m')
+ if message.endswith(dnem):
+ return
+ print(message)
+
+def setUpModule():
+ ost.PushLogSink(_UnitTestHHblitsLog())
+
class TestHHblitsBindings(unittest.TestCase):
def setUp(self):
self.hhroot = os.getenv('EBROOTHHMINSUITE')
--
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