From 68a77c958b6c2bee9e8fcddbaa4b00791a4e785d Mon Sep 17 00:00:00 2001
From: Stefan Bienert <stefan.bienert@unibas.ch>
Date: Thu, 25 Oct 2012 16:09:03 +0200
Subject: [PATCH] made blast bindings compatible with Python 2.4
---
modules/bindings/pymod/blast.py | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/modules/bindings/pymod/blast.py b/modules/bindings/pymod/blast.py
index 4ab48e301..9fdc739cf 100644
--- a/modules/bindings/pymod/blast.py
+++ b/modules/bindings/pymod/blast.py
@@ -251,7 +251,10 @@ def Blast(query, database, gap_open=11, gap_ext=1, matrix='BLOSUM62',
else:
complexity_opt='-seg'
- complexity_arg='yes' if filter_low_complexity==True else 'no'
+ if filter_low_complexity==True:
+ complexity_arg='yes'
+ else:
+ complexity_arg='no'
args=[blast_exe, '-db', database, '-matrix', matrix,
'-gapopen', str(gap_open), '-gapextend', str(gap_ext), '-outfmt', '5', complexity_opt, complexity_arg ]
--
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