diff --git a/modules/io/doc/io.rst b/modules/io/doc/io.rst index 141a1434cd0522e476dc605fea0e8c8976ea9cee..4746f452cf6e72287c54e2e05012fd775d7be3d3 100644 --- a/modules/io/doc/io.rst +++ b/modules/io/doc/io.rst @@ -168,7 +168,7 @@ Loading sequence or alignment files Saving Sequence Data ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -.. function:: SaveSequence(filename, format='auto') +.. function:: SaveSequence(sequence, filename, format='auto') Saving sequence data is performed by calling :func:`SaveSequence`. For files with non-standard extensions, the format can be set explicitly @@ -193,13 +193,13 @@ Saving Sequence Data :exc:`~ost.io.IOException` if the import fails due to an erroneous or inexistent file -.. function:: SaveSequenceList(filename, format='auto') +.. function:: SaveSequenceList(seq_list, filename, format='auto') For a desription of how to use :func:`SaveSequenceList` please refer to :func:`SaveSequence`. For a list of file formats supported by :func:`SaveSequenceList` see :doc:`formats`. -.. function:: SaveAlignment(filename, format='auto') +.. function:: SaveAlignment(aln, filename, format='auto') For a desription of how to use :func:`SaveAlignment` please refer to :func:`SaveSequence`.