From 72a2d5d1df50bb956a192db7d141b3a8cd35d936 Mon Sep 17 00:00:00 2001
From: Gabriel Studer <gabriel.studer@unibas.ch>
Date: Fri, 17 Apr 2020 08:32:57 +0200
Subject: [PATCH] relax strict ordering requirements of sspred, ssconf and
sequences
HHblits3 starts with the target sequence instead of the sspred/ssconf
sections
---
modules/bindings/pymod/hhblits.py | 7 ++-----
1 file changed, 2 insertions(+), 5 deletions(-)
diff --git a/modules/bindings/pymod/hhblits.py b/modules/bindings/pymod/hhblits.py
index 5951fe012..91b70493e 100644
--- a/modules/bindings/pymod/hhblits.py
+++ b/modules/bindings/pymod/hhblits.py
@@ -319,11 +319,8 @@ def ParseA3M(a3m_file):
state = 'ssconf'
continue
elif line[0] == '>':
- if state == 'ssconf' or state == 'msa':
- msa_seq.append('')
- msa_head.append(line[1:].rstrip())
- else:
- raise IOError('The A3M file is missing the "ss_conf" section')
+ msa_seq.append('')
+ msa_head.append(line[1:].rstrip())
state = 'msa'
continue
--
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