diff --git a/modules/seq/alg/doc/seqalg.rst b/modules/seq/alg/doc/seqalg.rst index 0285d04c75553e73f667a17860e4b01b743a5b75..ca98d1b654cf74d890c0257f3f9087cf12a794d7 100644 --- a/modules/seq/alg/doc/seqalg.rst +++ b/modules/seq/alg/doc/seqalg.rst @@ -145,9 +145,13 @@ Algorithms for Alignments .. code-block:: python - seq_a=seq.CreateSequence('A', 'abcdefghijklmnok') - seq_b=seq.CreateSequence('B', 'cdehijk') - alns=seq.alg.GlobalAlign(seq_a, seq_b, seq.alg.BLOSUM62) + seq_a = seq.CreateSequence('A', 'abcdefghijklmnok') + seq_b = seq.CreateSequence('B', 'cdehijk') + alns = seq.alg.GlobalAlign(seq_a, seq_b, seq.alg.BLOSUM62) + print alns[0].ToString(80) + # >>> A abcdefghijklmnok + # >>> B --cde--hi-----jk + alns = seq.alg.SemiGlobalAlign(seq_a, seq_b, seq.alg.BLOSUM62) print alns[0].ToString(80) # >>> A abcdefghijklmnok # >>> B --cde--hijk-----