From 73b49221e55074a7cefa24cb6af9f23acd8aa441 Mon Sep 17 00:00:00 2001
From: Gerardo Tauriello <gerardo.tauriello@unibas.ch>
Date: Wed, 17 Apr 2019 17:36:40 +0200
Subject: [PATCH] Doc fix: SemiGlobalAlign example
---
modules/seq/alg/doc/seqalg.rst | 10 +++++++---
1 file changed, 7 insertions(+), 3 deletions(-)
diff --git a/modules/seq/alg/doc/seqalg.rst b/modules/seq/alg/doc/seqalg.rst
index 0285d04c7..ca98d1b65 100644
--- a/modules/seq/alg/doc/seqalg.rst
+++ b/modules/seq/alg/doc/seqalg.rst
@@ -145,9 +145,13 @@ Algorithms for Alignments
.. code-block:: python
- seq_a=seq.CreateSequence('A', 'abcdefghijklmnok')
- seq_b=seq.CreateSequence('B', 'cdehijk')
- alns=seq.alg.GlobalAlign(seq_a, seq_b, seq.alg.BLOSUM62)
+ seq_a = seq.CreateSequence('A', 'abcdefghijklmnok')
+ seq_b = seq.CreateSequence('B', 'cdehijk')
+ alns = seq.alg.GlobalAlign(seq_a, seq_b, seq.alg.BLOSUM62)
+ print alns[0].ToString(80)
+ # >>> A abcdefghijklmnok
+ # >>> B --cde--hi-----jk
+ alns = seq.alg.SemiGlobalAlign(seq_a, seq_b, seq.alg.BLOSUM62)
print alns[0].ToString(80)
# >>> A abcdefghijklmnok
# >>> B --cde--hijk-----
--
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