diff --git a/modules/io/doc/profile.rst b/modules/io/doc/profile.rst index e150a1346c64ada32a9fa53611d3b08ef00ae8ff..bb6d41e27bf34d592acd403f05c1793de2721427 100644 --- a/modules/io/doc/profile.rst +++ b/modules/io/doc/profile.rst @@ -154,8 +154,11 @@ The IOProfile Class Only relevant when reading PDB format. When set to true, reads CONECT statements and applies them in the pdb reader. This can result in hydrogen bonds salt bridges etc. to be connected. Check the PDB format - definition for more info. Disables connectity generation in case of HETATM - in processor except for water. + definition for more info. This may cause issues in subsequent processing + with the processor as we suddenly have two places where connectivity is + built. For the use case of valid CONECT statements for all hetatms, you + may want to disable processing of bonds between them in + :attr:`ost.conop.Processor.connect_hetatm` .. attribute:: processor