diff --git a/actions/ost-compare-ligand-structures b/actions/ost-compare-ligand-structures index bd7631f5b589212bed277f9403e5cfd3311eb407..b28384cf18ed3572ba240a72d7ecc5fd43cd5f2e 100644 --- a/actions/ost-compare-ligand-structures +++ b/actions/ost-compare-ligand-structures @@ -273,8 +273,8 @@ def _ParseArgs(): '--verbosity', dest="verbosity", type=int, - default=3, - help="Set verbosity level. Defaults to 3 (INFO).") + default=2, + help="Set verbosity level. Defaults to 2 (Script).") parser.add_argument( "--full-results", diff --git a/actions/ost-compare-structures b/actions/ost-compare-structures index f3ec56cb632529f7a6c4fd3df00b08a5de22c44c..7f35291ac4e2b14c2c5b855bfb2a05a889cfb704 100644 --- a/actions/ost-compare-structures +++ b/actions/ost-compare-structures @@ -566,7 +566,7 @@ def _ParseArgs(): dest="verbosity", type=int, default=2, - help="Set verbosity level. Defaults to 3 (Script).") + help="Set verbosity level. Defaults to 2 (Script).") parser.add_argument( "--lddt-add-mdl-contacts", diff --git a/modules/mol/alg/pymod/ligand_scoring_base.py b/modules/mol/alg/pymod/ligand_scoring_base.py index 0e61a02c9295f48b96f31f093cb251e488d5d447..8710b05d1452f1ee17c1ee68efc2513f77effa23 100644 --- a/modules/mol/alg/pymod/ligand_scoring_base.py +++ b/modules/mol/alg/pymod/ligand_scoring_base.py @@ -859,7 +859,7 @@ class LigandScorer: new_chain = \ new_editor.InsertChain(new_chain_name) break - LogScript("Moved ligand residue %s to new chain %s" % ( + LogInfo("Moved ligand residue %s to new chain %s" % ( residue.qualified_name, new_chain.name)) else: msg = \ @@ -961,6 +961,7 @@ class LigandScorer: LogWarning(msg) + LogScript("Computing pairwise scores for all %s x %s ligands" % shape) for target_id, target_ligand in enumerate(self.target_ligands): LogInfo("Analyzing target ligand %s" % target_ligand)