From 7823f919f17cb2ecb888268d543e36a6f0f9e3f6 Mon Sep 17 00:00:00 2001
From: Gabriel Studer <gabriel.studer@unibas.ch>
Date: Tue, 27 Sep 2022 22:08:04 +0200
Subject: [PATCH] DockQ binding: improve error handling
---
modules/bindings/pymod/dockq.py | 10 +++++++---
1 file changed, 7 insertions(+), 3 deletions(-)
diff --git a/modules/bindings/pymod/dockq.py b/modules/bindings/pymod/dockq.py
index e761c845d..ff920f627 100644
--- a/modules/bindings/pymod/dockq.py
+++ b/modules/bindings/pymod/dockq.py
@@ -272,13 +272,17 @@ def DockQ(dockq_exec, mdl, ref, mdl_ch1, mdl_ch2, ref_ch1,
proc = subprocess.run(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
- shutil.rmtree(tmp_dir) # cleanup, no matter if DockQ executed successfully
+ shutil.rmtree(tmp_dir) # cleanup, no matter if DockQ executed successfully
if proc.returncode != 0:
raise RuntimeError("DockQ run failed - returncode: " + \
- str(proc.return_code))
+ str(proc.returncode) + ", stderr: " + \
+ proc.stderr.decode() + ", stdout: " + \
+ proc.stdout.decode())
if proc.stderr.decode() != "":
- raise RuntimeError("DockQ run failed - stderr: " + proc.stderr.decode())
+ raise RuntimeError("DockQ run failed - stderr: " + \
+ proc.stderr.decode() + ", stdout: " + \
+ proc.stdout.decode())
return DockQResult.FromDockQOutput(proc.stdout.decode())
--
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