From 7be85b888139a9e668ca3d8a2eee412b252ff811 Mon Sep 17 00:00:00 2001
From: Marco Biasini <marco.biasini@unibas.ch>
Date: Tue, 29 Mar 2011 11:20:54 +0200
Subject: [PATCH] document how to add CHARMM residues definitions to the
 compound.chemlib

---
 modules/conop/doc/conop.rst | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/modules/conop/doc/conop.rst b/modules/conop/doc/conop.rst
index 8eed48919..b8dc369dc 100644
--- a/modules/conop/doc/conop.rst
+++ b/modules/conop/doc/conop.rst
@@ -258,8 +258,14 @@ The CompoundLib may be created from a MM CIF dictionary. The latest dictionary
 can be found on the `wwPDB site <http://www.wwpdb.org/ccd.html>`_. 
 
 After downloading the file in MM CIF use the :program:`chemdict_tool` to convert
-the MM CIF  dictionary into our internal format.
+the MM CIF  dictionary into our internal format. 
 
 .. code-block:: bash
   
   chemdict_tool create <components.cif> <compounds.chemlib>
+  
+If you are working with CHARMM trajectory files, you will also have to add the definitions for CHARMM. Assuming your are in the top-level source directory of OpenStructure, this can be achieved by:
+
+.. code-block:: bash
+
+  chemdict_tool update modules/conop/data/charmm.cif <compounds.chemlib> charmm
-- 
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