From 7e5d60c8a2e557f7742a33bd9ed3f8a3b8bb788b Mon Sep 17 00:00:00 2001
From: Marco Biasini <marco.biasini@unibas.ch>
Date: Fri, 22 Oct 2010 13:26:42 +0200
Subject: [PATCH] fix broken clustalw binding
---
modules/bindings/pymod/clustalw.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/modules/bindings/pymod/clustalw.py b/modules/bindings/pymod/clustalw.py
index a1327ee7e..f61d4f24f 100644
--- a/modules/bindings/pymod/clustalw.py
+++ b/modules/bindings/pymod/clustalw.py
@@ -41,7 +41,7 @@ def ClustalW(seq1, seq2=None, clustalw=None, keep_files=False):
for seq_num,aln_seq in enumerate(aln.sequences):
if aln_seq.GetName()==sequence.GetName():
break
- aln.SetSequenceOffset(seq_num,sequence.GetSequenceOffset())
+ aln.SetSequenceOffset(seq_num,sequence.offset)
if sequence.HasAttachedView():
aln.AttachView(seq_num,sequence.GetAttachedView().Copy())
--
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