From 81de9df389eb6d9882845527bfe9e2d2c3105b4e Mon Sep 17 00:00:00 2001 From: pascal <pascal@5a81b35b-ba03-0410-adc8-b2c5c5119f08> Date: Fri, 9 Apr 2010 14:54:19 +0000 Subject: [PATCH] re-enter default path for PDB-file in DSSP git-svn-id: https://dng.biozentrum.unibas.ch/svn/openstructure/trunk@1959 5a81b35b-ba03-0410-adc8-b2c5c5119f08 --- modules/bindings/pymod/dssp.py | 13 ++++++------- 1 file changed, 6 insertions(+), 7 deletions(-) diff --git a/modules/bindings/pymod/dssp.py b/modules/bindings/pymod/dssp.py index 77ff23361..af1790c79 100644 --- a/modules/bindings/pymod/dssp.py +++ b/modules/bindings/pymod/dssp.py @@ -63,13 +63,12 @@ def _CalcRelativeSA(residue_type, absolute_sa): def AssignDSSP(ent, pdb_path="", extract_burial_status_flag=0, tmp_dir=None): entity_saved_flag = 0 - if pdb_path=="": - # use of mktemp is a safty problem (use mkstemp and provide file handle to - # subsequent process - pdb_path=tempfile.mktemp(suffix=".pdb",prefix="temp_entity", - dir=tmp_dir) - io.SaveEntity(ent, pdb_path) - entity_saved_flag = 1 + # use of mktemp is a safty problem (use mkstemp and provide file handle to + # subsequent process + pdb_path=tempfile.mktemp(suffix=".pdb",prefix="temp_entity", + dir=tmp_dir) + io.SaveEntity(ent, pdb_path) + entity_saved_flag = 1 #TODO: exception handling (currently errors occuring here # are handled in the parser LoadDSSP) -- GitLab