diff --git a/modules/mol/alg/pymod/superpose.py b/modules/mol/alg/pymod/superpose.py index 4cf8de56d57c97e2dc7a46352cff3e3ab30d259c..96ad881b0e045f8ded7af3ff745ef00a712a0ff4 100644 --- a/modules/mol/alg/pymod/superpose.py +++ b/modules/mol/alg/pymod/superpose.py @@ -260,9 +260,9 @@ def MatchResidueByGlobalAln(ent_a, ent_b, atoms='all'): def Superpose(ent_a, ent_b, match='number', atoms='all'): """ - Superposes the first entity onto the second. To do so, two views are created, - returned with the result. **atoms** describes what goes in to these views and - **match** the selection method. For superposition, + Superposes the model entity onto the reference. To do so, two views are + created, returned with the result. **atoms** describes what goes in to these + views and **match** the selection method. For superposition, :func:`~ost.mol.alg.SuperposeSVD` is called. For matching, following methods are recognised: @@ -278,9 +278,9 @@ def Superpose(ent_a, ent_b, match='number', atoms='all'): * ``global-aln`` - select residues from a Needleman/Wunsch alignment, includes **atoms**, calls :func:`~ost.mol.alg.MatchResidueByGlobalAln` - :param ent_a: The first entity + :param ent_a: The model entity :type ent_a: :class:`~ost.mol.EntityView` or :class:`~ost.mol.EntityHandle` - :param ent_b: The second entity + :param ent_b: The reference entity :type ent_b: :class:`~ost.mol.EntityView` or :class:`~ost.mol.EntityHandle` :param match: Method to gather residues/ atoms :type match: :class:`str`