diff --git a/modules/gui/src/sequence/sequence_model.cc b/modules/gui/src/sequence/sequence_model.cc
index 322ee4e45240775813672d580364328cd854ea6e..95613ac9a0d57becebc4b79e0fc37883c6e9c656 100644
--- a/modules/gui/src/sequence/sequence_model.cc
+++ b/modules/gui/src/sequence/sequence_model.cc
@@ -80,13 +80,19 @@ void SequenceModel::InsertGfxEntity(gfx::EntityP& ent){
   this->endInsertRows();
 }
 
-void SequenceModel::RemoveSequence(gfx::EntityP& entity){
+void SequenceModel::RemoveGfxEntity(gfx::EntityP& entity){
   ViewObject* obj = this->GetObject(entity);
   if(obj){
     int index = objects_.indexOf(obj);
-    this->beginRemoveRows(QModelIndex(),index,index);
+    this->beginRemoveRows(QModelIndex(),index,index+obj->GetRowCount()-1);
+    int cols_before = this->columnCount();
     objects_.removeAt(index);
     this->endRemoveRows();
+    int cols = this->columnCount();
+    if(cols_before>cols){
+      this->beginRemoveColumns(QModelIndex(), cols, cols_before-1);
+      this->endRemoveColumns();
+    }
   }
 }
 
@@ -173,7 +179,7 @@ int SequenceModel::columnCount(const QModelIndex& parent) const
   for (int i = 0; i<objects_.size(); i++){
     int max_col = objects_[i]->GetMaxColumnCount();
     if(max_col >= cols)
-      cols = max_col+1;
+      cols = max_col;
   }
   return cols;
 }
diff --git a/modules/gui/src/sequence/sequence_model.hh b/modules/gui/src/sequence/sequence_model.hh
index ad94c593043c330b6933fcb23ad14a8385f29bf3..93e2f7cbab27d60a47fa6fbd1f47c4b80e455382 100644
--- a/modules/gui/src/sequence/sequence_model.hh
+++ b/modules/gui/src/sequence/sequence_model.hh
@@ -47,7 +47,7 @@ public:
   void InsertSequence(QString& name, seq::SequenceHandle& seq);
   void InsertSequences(const QList<QString>& names, seq::SequenceList& list);
 
-  void RemoveSequence(gfx::EntityP& entity);
+  void RemoveGfxEntity(gfx::EntityP& entity);
 
   ViewObject* GetObject(gfx::EntityP& entity);
   const PainterList& GetPainters(const QModelIndex& index) const;
diff --git a/modules/gui/src/sequence/sequence_viewer.cc b/modules/gui/src/sequence/sequence_viewer.cc
index 73ab0efa6aec91cfb115c9705aae6adcc2b2e97f..4496048c2d5af243a258e2f22e888dbf264a0d6e 100644
--- a/modules/gui/src/sequence/sequence_viewer.cc
+++ b/modules/gui/src/sequence/sequence_viewer.cc
@@ -77,7 +77,7 @@ void SequenceViewerV2::NodeAdded(const gfx::GfxNodeP& n)
 void SequenceViewerV2::NodeRemoved(const gfx::GfxNodeP& node)
 {
   if (gfx::EntityP o=boost::dynamic_pointer_cast<gfx::Entity>(node)) {
-
+    model_->RemoveGfxEntity(o);
   }
 }
 
diff --git a/modules/gui/src/sequence/view_object.cc b/modules/gui/src/sequence/view_object.cc
index 1db41336f83ce62b00598089ab87a4a4f1b41257..670fad5599aacce8b066a79905400e56ecf9a605 100644
--- a/modules/gui/src/sequence/view_object.cc
+++ b/modules/gui/src/sequence/view_object.cc
@@ -182,14 +182,12 @@ void ViewObject::SetSelection(int row, const QSet<int>& added, const QSet<int>&
 
     QSetIterator<int> i(removed);
     while (i.hasNext()){
-      std::cout << "REMOVED!" << std::endl;
       int row = i.next();
       if (mol::ResidueView rv=seq.GetResidue(row-1)) {
         view.AddResidue(rv, mol::ViewAddFlag::INCLUDE_ATOMS);
       }
     }
     sel = mol::Difference(sel,view);
-
     view = seq.GetAttachedView().GetHandle().CreateEmptyView();
     i = QSetIterator<int>(added);
     while (i.hasNext()){
@@ -199,6 +197,7 @@ void ViewObject::SetSelection(int row, const QSet<int>& added, const QSet<int>&
       }
     }
     sel = mol::Union(sel,view);
+    sel.AddAllInclusiveBonds();
     entity->SetSelection(sel);
   }
 }
@@ -207,7 +206,7 @@ QVariant ViewObject::GetData(int row, int column, int role)
 {
   if(row<0 || row >= rows_.size())return QVariant();
 
-  if(column<0 || column >= rows_[row].seq.GetLength())return QVariant();
+  if(column<0 || column >= rows_[row].seq.GetLength()+1)return QVariant();
 
   if(column == 0) {
     if (role == Qt::DisplayRole){
@@ -241,8 +240,8 @@ int ViewObject::GetMaxColumnCount() const
   int columns = 0;
   for(int i = 0; i < rows_.size(); i++){
     int col_length = rows_[i].seq.GetLength();
-    if(columns < col_length){
-      columns = rows_[i].seq.GetLength() + 1;
+    if(columns <= col_length){
+      columns = col_length+1;
     }
   }
   return columns;