From 840f98868591b5fc95b04f0a3409d6f3d760d897 Mon Sep 17 00:00:00 2001
From: Xavier Robin <xavier.robin@unibas.ch>
Date: Fri, 6 Mar 2020 15:21:59 +0100
Subject: [PATCH] fix DeprecationWarning: invalid escape sequence
---
modules/base/pymod/table.py | 14 +++++++-------
modules/bindings/pymod/clustalw.py | 4 ++--
2 files changed, 9 insertions(+), 9 deletions(-)
diff --git a/modules/base/pymod/table.py b/modules/base/pymod/table.py
index 4277edf94..6c9a039f9 100644
--- a/modules/base/pymod/table.py
+++ b/modules/base/pymod/table.py
@@ -835,7 +835,7 @@ Statistics for column %(col)s
Operands have to be the name of a column or an expression that can be
parsed to float, int, bool or string.
- Valid operators are: and, or, !=, !, <=, >=, ==, =, <, >, +, -, \*, /
+ Valid operators are: and, or, !=, !, <=, >=, ==, =, <, >, +, -, \\*, /
.. code-block:: python
@@ -1137,7 +1137,7 @@ Statistics for column %(col)s
:param z: column name for third dimension
:type z: :class:`str`
- :param style: symbol style (e.g. *.*, *-*, *x*, *o*, *+*, *\**). For a
+ :param style: symbol style (e.g. *.*, *-*, *x*, *o*, *+*, *\\**). For a
complete list check (`matplotlib docu <http://matplotlib.sourceforge.net/api/pyplot_api.html#matplotlib.pyplot.plot>`__).
:type style: :class:`str`
@@ -1203,7 +1203,7 @@ Statistics for column %(col)s
'linear')
:type z_interpol: :class:`str`
- :param \*\*kwargs: additional arguments passed to matplotlib
+ :param \\*\\*kwargs: additional arguments passed to matplotlib
:returns: the ``matplotlib.pyplot`` module
@@ -2360,7 +2360,7 @@ Statistics for column %(col)s
deprecated in the future. Numpy itself suggests replacing numpy matrix by
numpy array.
- :param \*args: column names to include in numpy array
+ :param \\*args: column names to include in numpy array
:warning: The function depends on *numpy*
'''
@@ -2396,7 +2396,7 @@ Statistics for column %(col)s
Only columns of type *int* or *float* are supported. *NA* values in the
table will be converted to *None* values.
- :param \*args: column names to include in numpy matrix
+ :param \\*args: column names to include in numpy matrix
:warning: The function depends on *numpy*
'''
@@ -2487,7 +2487,7 @@ Statistics for column %(col)s
:math:`p` are the prefactors to optimize :math:`(a,b,c,...)` and :math:`z`
is the vector containing the result of equation :eq:`op1`.
- The parameter ref_col equals to :math:`z` in both equations, and \*args
+ The parameter ref_col equals to :math:`z` in both equations, and \\*args
are columns :math:`u`, :math:`v` and :math:`w` (or :math:`A` in :eq:`op2`).
All columns must be specified by their names.
@@ -2499,7 +2499,7 @@ Statistics for column %(col)s
The function returns a list containing the prefactors
:math:`a, b, c, ...` in the correct order (i.e. same as columns were
- specified in \*args).
+ specified in \\*args).
Weighting:
If the kwarg weights="columX" is specified, the equations are weighted by
diff --git a/modules/bindings/pymod/clustalw.py b/modules/bindings/pymod/clustalw.py
index aab374f07..f95422b79 100644
--- a/modules/bindings/pymod/clustalw.py
+++ b/modules/bindings/pymod/clustalw.py
@@ -72,8 +72,8 @@ def ClustalW(seq1, seq2=None, clustalw=None, keep_files=False, nopgap=False,
I isoleucine Y tyrosine
K lysine Z glutamate or glutamine
L leucine X any
- M methionine \* translation stop
- N asparagine \- gap of indeterminate length
+ M methionine \\* translation stop
+ N asparagine \\- gap of indeterminate length
======= ======================= ======= ============================
'''
--
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