From 8ef94647b759c16df1ba78aaf814bc93de3b01cb Mon Sep 17 00:00:00 2001
From: Valerio Mariani <valerio.mariani@unibas.ch>
Date: Wed, 28 Nov 2012 16:05:19 +0100
Subject: [PATCH] Refactored unittests for feasibility check
---
modules/io/tests/test_io_pdb.py | 15 +++++++++++----
1 file changed, 11 insertions(+), 4 deletions(-)
diff --git a/modules/io/tests/test_io_pdb.py b/modules/io/tests/test_io_pdb.py
index 76537e9f7..17933f35a 100644
--- a/modules/io/tests/test_io_pdb.py
+++ b/modules/io/tests/test_io_pdb.py
@@ -18,12 +18,19 @@ class TestPDB(unittest.TestCase):
def test_compnd_parser(self):
profiles=io.IOProfiles()
profiles['FEAS_CHECK']=io.IOProfile(bond_feasibility_check=True)
+ profiles['NO_FEAS_CHECK']=io.IOProfile(bond_feasibility_check=False)
- e=io.LoadPDB('testfiles/pdb/simple_defective.pdb', restrict_chains="A",profile='FEAS_CHECK')
+ e1=io.LoadPDB('testfiles/pdb/simple_defective.pdb', restrict_chains="A",profile='FEAS_CHECK')
+ e2=io.LoadPDB('testfiles/pdb/simple_defective.pdb', restrict_chains="A",profile='NO_FEAS_CHECK')
+ ed=io.LoadPDB('testfiles/pdb/simple_defective.pdb', restrict_chains="A")
- res=e.FindResidue('A',3)
-
- self.assertFalse(mol.BondExists(res.FindAtom("CA"),res.FindAtom("CB")))
+ res1=e1.FindResidue('A',3)
+ res2=e2.FindResidue('A',3)
+ resd=ed.FindResidue('A',3)
+
+ self.assertFalse(mol.BondExists(res1.FindAtom("CA"),res1.FindAtom("CB")))
+ self.assertTrue(mol.BondExists(res2.FindAtom("CA"),res2.FindAtom("CB")))
+ self.assertTrue(mol.BondExists(resd.FindAtom("CA"),resd.FindAtom("CB")))
if __name__== '__main__':
from ost import testutils
--
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