From 97fc25959d52c2abfe2f40b6457f55528f0dbf43 Mon Sep 17 00:00:00 2001
From: Gabriel Studer <gabriel.studer@stud.unibas.ch>
Date: Fri, 26 Oct 2012 10:31:32 +0200
Subject: [PATCH] Make it run under older python versions. Additionally, one
unit test had to be modified, since old blast versions (e.g. 2.2.16) find 27
hits in the created testdatabase and new blastversions (e.g. 2.2.27+) find 28
hits. The only check now is, wether the created database works/something can
be found in it.
---
modules/bindings/tests/test_blast.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/modules/bindings/tests/test_blast.py b/modules/bindings/tests/test_blast.py
index 25de6cf08..54a5c4ef8 100644
--- a/modules/bindings/tests/test_blast.py
+++ b/modules/bindings/tests/test_blast.py
@@ -72,7 +72,7 @@ class TestBlastBindings(unittest.TestCase):
self.assertRaises(RuntimeError, blast.Blast, self.query, 'testfiles/seqdb',
blast_location='/I/do/not/exist')
version=blast.BlastVersion()
- self.assertIsInstance(version,str)
+ self.assertTrue(isinstance(version,str))
re_v = re.compile('\d+\.\d+\.\d+')
match=False
if re_v.match(version):
@@ -90,7 +90,7 @@ class TestBlastBindings(unittest.TestCase):
test_seq=seq.CreateSequence('B','ALRLVKDGFAVAIADYNDATATAVAAEINQAGGRAVAIKVDV'+
'SRRDQVFAAVEQARKALGGFNVIVNNAGIAPSTPIESIT')
blastout=blast.Blast(test_seq,db_name)
- self.assertEqual(len(blastout),28)
+ self.assertTrue(len(blastout)>10)
shutil.rmtree(tmp_dir_name)
if __name__ == "__main__":
--
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