diff --git a/modules/mol/alg/doc/lddt.rst b/modules/mol/alg/doc/lddt.rst index 47e033501bce8acb1609573a2275866e950f6dec..3d3e862c3fbc61682eb880fe3e738365b8cb1501 100644 --- a/modules/mol/alg/doc/lddt.rst +++ b/modules/mol/alg/doc/lddt.rst @@ -2,9 +2,9 @@ lDDT ====== ------------- +------------------------------------- Where can I find the lDDT executable? ------------- +------------------------------------- The lDDT executable can be found at <YOUR-OST-STAGE-DIR>/bin/ @@ -179,4 +179,4 @@ For example: lddt -v 1 -f -p stereo_chemical_params.txt mdl1.pdb ref.pdb WARNING: Verbosity levels 1 and 2 can generate a large amount of output text, -especially with large structures and multiple models being evaluated. \ No newline at end of file +especially with large structures and multiple models being evaluated. diff --git a/modules/seq/base/doc/seq.rst b/modules/seq/base/doc/seq.rst index e5a89a5f1ac2099fc0789905107e501681a7d007..658d163acb24ec2ef56d56c7da72ac65811e8ce9 100644 --- a/modules/seq/base/doc/seq.rst +++ b/modules/seq/base/doc/seq.rst @@ -98,7 +98,8 @@ The SequenceHandle Get residue index of character at given position. This method is the inverse of :meth:`GetPos`. If the sequence contains a gap at that position, - an :exc:`Error` is raised. + an :exc:`Error` is raised. Admires the + :ref:`sequence offset <sequence-offset>`. .. code-block:: python