From a2a86ae2ba4e01505723b5f5170571085ece3089 Mon Sep 17 00:00:00 2001
From: Stefan Bienert <stefan.bienert@unibas.ch>
Date: Thu, 19 Mar 2015 11:25:57 +0100
Subject: [PATCH] Improve documentation
---
modules/mol/alg/doc/lddt.rst | 6 +++---
modules/seq/base/doc/seq.rst | 3 ++-
2 files changed, 5 insertions(+), 4 deletions(-)
diff --git a/modules/mol/alg/doc/lddt.rst b/modules/mol/alg/doc/lddt.rst
index 47e033501..3d3e862c3 100644
--- a/modules/mol/alg/doc/lddt.rst
+++ b/modules/mol/alg/doc/lddt.rst
@@ -2,9 +2,9 @@
lDDT
======
-------------
+-------------------------------------
Where can I find the lDDT executable?
-------------
+-------------------------------------
The lDDT executable can be found at <YOUR-OST-STAGE-DIR>/bin/
@@ -179,4 +179,4 @@ For example:
lddt -v 1 -f -p stereo_chemical_params.txt mdl1.pdb ref.pdb
WARNING: Verbosity levels 1 and 2 can generate a large amount of output text,
-especially with large structures and multiple models being evaluated.
\ No newline at end of file
+especially with large structures and multiple models being evaluated.
diff --git a/modules/seq/base/doc/seq.rst b/modules/seq/base/doc/seq.rst
index e5a89a5f1..658d163ac 100644
--- a/modules/seq/base/doc/seq.rst
+++ b/modules/seq/base/doc/seq.rst
@@ -98,7 +98,8 @@ The SequenceHandle
Get residue index of character at given position. This method is the
inverse of :meth:`GetPos`. If the sequence contains a gap at that position,
- an :exc:`Error` is raised.
+ an :exc:`Error` is raised. Admires the
+ :ref:`sequence offset <sequence-offset>`.
.. code-block:: python
--
GitLab